Wall clock time and date at job start Wed Apr 1 2020 03:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35994 * 116.99925 * 2 1 4 4 C 1.38131 * 119.89283 * 0.02562 * 3 2 1 5 5 C 1.39957 * 119.87127 * 180.24426 * 4 3 2 6 6 C 1.46938 * 120.11082 * 179.79153 * 5 4 3 7 7 C 1.35148 * 119.99794 * 359.97438 * 6 5 4 8 8 C 1.41797 * 120.00108 * 179.97438 * 7 6 5 9 9 O 1.21781 * 119.99917 * 354.33159 * 8 7 6 10 10 N 1.34777 * 120.00425 * 174.32521 * 8 7 6 11 11 C 1.36741 * 120.00072 * 184.52220 * 10 8 7 12 12 H 1.07996 * 120.00316 * 18.38478 * 11 10 8 13 13 C 1.39095 * 119.99848 * 198.37205 * 11 10 8 14 14 N 1.31340 * 120.00126 * 9.14622 * 13 11 10 15 15 Si 1.86801 * 119.99974 * 189.13925 * 13 11 10 16 16 H 1.48499 * 109.46915 * 60.00315 * 15 13 11 17 17 H 1.48499 * 109.47161 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47222 * 300.00440 * 15 13 11 19 19 C 1.46499 * 119.99828 * 4.53051 * 10 8 7 20 20 C 1.53000 * 117.49678 * 308.51072 * 19 10 8 21 21 C 1.53001 * 117.49964 * 239.85445 * 19 10 8 22 22 C 1.39929 * 119.78013 * 359.54058 * 5 4 3 23 23 C 1.38325 * 120.03567 * 0.51855 * 22 5 4 24 24 C 1.39162 * 120.02557 * 359.65631 * 23 22 5 25 25 O 1.36096 * 120.72212 * 180.25763 * 24 23 22 26 26 C 1.43146 * 116.74633 * 342.75745 * 25 24 23 27 27 C 1.53480 * 108.24522 * 46.26122 * 26 25 24 28 28 O 1.36160 * 119.22150 * 179.55841 * 23 22 5 29 29 H 1.08997 * 109.47149 * 60.00284 * 1 2 3 30 30 H 1.09009 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47706 * 299.99745 * 1 2 3 32 32 H 1.07996 * 120.06285 * 359.96048 * 4 3 2 33 33 H 1.08003 * 120.00497 * 179.97438 * 6 5 4 34 34 H 1.07997 * 120.00392 * 0.02562 * 7 6 5 35 35 H 0.96998 * 120.00229 * 180.02562 * 14 13 11 36 36 H 1.09000 * 115.55417 * 94.17659 * 19 10 8 37 37 H 1.09001 * 117.49871 * 0.02562 * 20 19 10 38 38 H 1.08998 * 117.50049 * 145.01783 * 20 19 10 39 39 H 1.08994 * 117.49647 * 214.98018 * 21 19 10 40 40 H 1.08995 * 117.49603 * 359.96909 * 21 19 10 41 41 H 1.08003 * 119.98827 * 180.28029 * 22 5 4 42 42 H 1.08996 * 109.71281 * 165.94620 * 26 25 24 43 43 H 1.08998 * 109.70821 * 286.53304 * 26 25 24 44 44 H 1.08993 * 109.71054 * 59.86731 * 27 26 25 45 45 H 1.08999 * 109.71214 * 180.50624 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2919 2.3688 0.0005 5 6 1.9277 3.6156 -0.0046 6 6 1.1303 4.8497 -0.0087 7 6 -0.2195 4.7820 -0.0080 8 6 -0.9892 5.9729 -0.0114 9 8 -0.4381 7.0543 0.0892 10 7 -2.3305 5.9083 -0.1261 11 6 -3.0647 7.0578 -0.2225 12 1 -2.5843 7.9835 -0.5032 13 6 -4.4303 7.0349 0.0408 14 7 -4.9824 5.9590 0.5533 15 14 -5.4791 8.5345 -0.3344 16 1 -5.3984 8.8446 -1.7844 17 1 -6.8903 8.2566 0.0351 18 1 -4.9822 9.6946 0.4483 19 6 -3.0019 4.6063 -0.1474 20 6 -2.4862 3.5617 -1.1392 21 6 -3.8270 4.2571 -1.3876 22 6 3.3254 3.6830 -0.0006 23 6 4.0746 2.5202 -0.0023 24 6 3.4390 1.2822 -0.0009 25 8 4.1622 0.1293 0.0027 26 6 5.5394 0.2316 -0.3741 27 6 6.1534 1.4261 0.3687 28 8 5.4336 2.6051 -0.0075 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2134 2.3114 0.0003 33 1 1.6227 5.8109 -0.0123 34 1 -0.7121 3.8209 -0.0040 35 1 -5.9347 5.9429 0.7366 36 1 -3.3656 4.2491 0.8161 37 1 -1.6471 3.8430 -1.7756 38 1 -2.5109 2.5173 -0.8285 39 1 -4.7333 3.6700 -1.2401 40 1 -3.8706 4.9963 -2.1874 41 1 3.8195 4.6433 0.0000 42 1 6.0650 -0.6824 -0.0979 43 1 5.6155 0.3885 -1.4501 44 1 6.0703 1.2722 1.4445 45 1 7.2023 1.5317 0.0916 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491202826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:06 Heat of formation + Delta-G solvation = -67.273629 kcal Electronic energy + Delta-G solvation = -30197.748065 eV Core-core repulsion = 25955.169715 eV Total energy + Delta-G solvation = -4242.578351 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.33730 -40.92448 -40.28384 -38.52300 -38.00911 -37.72166 -35.24067 -34.23132 -33.08929 -31.57652 -31.05159 -29.37277 -28.30630 -27.26627 -25.96688 -24.41006 -23.33310 -23.16583 -22.70401 -21.54800 -20.02149 -19.69758 -18.91940 -18.63256 -18.37612 -17.87939 -17.28443 -16.98836 -16.77027 -16.28289 -16.05728 -15.99729 -15.89839 -15.73562 -15.51767 -15.26595 -15.13941 -14.73000 -14.29531 -14.06835 -13.98524 -13.52576 -13.41060 -13.12391 -12.97321 -12.68934 -12.53734 -12.43312 -12.31261 -12.23959 -12.19923 -12.12314 -11.83316 -11.66517 -11.50851 -11.07379 -10.70672 -10.40581 -10.32592 -9.76755 -9.28833 -8.74669 -8.31881 -5.90544 -0.51640 0.24465 0.94556 1.40445 1.43500 1.49558 1.97013 2.15851 2.25364 2.35030 2.45232 2.76887 2.97267 3.12848 3.24738 3.36173 3.63323 3.76092 3.87698 4.01348 4.03877 4.16463 4.20786 4.22755 4.30011 4.37418 4.42078 4.46282 4.48652 4.59550 4.63481 4.69607 4.79564 4.81128 4.89456 4.93257 5.06674 5.13594 5.33650 5.39158 5.40928 5.43859 5.55331 5.63168 5.81844 6.06647 6.14599 6.49589 6.51645 7.16541 7.44377 8.04813 8.66127 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.002627 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.421606 B =10654.234645 C =11808.877007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.130 3.870 4 C -0.193 4.193 5 C -0.017 4.017 6 C -0.054 4.054 7 C -0.174 4.174 8 C 0.450 3.550 9 O -0.651 6.651 10 N -0.417 5.417 11 C -0.343 4.343 12 H 0.070 0.930 13 C 0.011 3.989 14 N -0.868 5.868 15 Si 0.984 3.016 16 H -0.270 1.270 17 H -0.266 1.266 18 H -0.279 1.279 19 C 0.105 3.895 20 C -0.188 4.188 21 C -0.146 4.146 22 C -0.139 4.139 23 C 0.083 3.917 24 C 0.009 3.991 25 O -0.313 6.313 26 C 0.012 3.988 27 C 0.013 3.987 28 O -0.315 6.315 29 H 0.068 0.932 30 H 0.125 0.875 31 H 0.064 0.936 32 H 0.156 0.844 33 H 0.120 0.880 34 H 0.152 0.848 35 H 0.276 0.724 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.135 0.865 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.448 -17.972 -1.912 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.084 3.916 4 C -0.212 4.212 5 C -0.017 4.017 6 C -0.076 4.076 7 C -0.194 4.194 8 C 0.244 3.756 9 O -0.543 6.543 10 N -0.131 5.131 11 C -0.471 4.471 12 H 0.088 0.912 13 C -0.194 4.194 14 N -0.504 5.504 15 Si 0.807 3.193 16 H -0.196 1.196 17 H -0.190 1.190 18 H -0.205 1.205 19 C 0.001 3.999 20 C -0.225 4.225 21 C -0.184 4.184 22 C -0.158 4.158 23 C 0.037 3.963 24 C -0.036 4.036 25 O -0.228 6.228 26 C -0.062 4.062 27 C -0.061 4.061 28 O -0.230 6.230 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.083 0.917 32 H 0.173 0.827 33 H 0.138 0.862 34 H 0.169 0.831 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.153 0.847 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.164 0.836 42 H 0.173 0.827 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 14.547 -17.772 -1.798 23.037 hybrid contribution -0.837 1.323 -0.046 1.566 sum 13.709 -16.449 -1.845 21.492 Atomic orbital electron populations 1.23467 0.76244 1.05966 1.02605 1.86121 1.23346 1.25208 1.88589 1.18054 0.88810 0.85562 0.99194 1.21390 1.01152 0.90088 1.08537 1.18398 0.92026 0.92020 0.99281 1.22081 0.93232 0.96458 0.95799 1.22373 0.94874 0.98437 1.03748 1.17498 0.82896 0.90206 0.84957 1.90600 1.71692 1.32771 1.59190 1.43380 1.04739 1.05852 1.59177 1.19571 0.91464 0.89159 1.46898 0.91158 1.25950 0.97565 1.00885 0.95035 1.69936 1.13017 1.28723 1.38690 0.85147 0.77349 0.77953 0.78825 1.19556 1.18971 1.20490 1.21217 1.00053 0.83378 0.95250 1.23781 0.97587 0.98639 1.02504 1.22718 0.94810 1.01804 0.99049 1.20605 0.91877 0.97476 1.05861 1.18379 0.83789 0.91846 1.02248 1.18277 0.89244 0.85728 1.10385 1.86336 1.24083 1.27698 1.84700 1.23990 0.79504 1.02350 1.00379 1.24031 0.98360 0.83209 1.00543 1.86336 1.13699 1.38543 1.84398 0.91359 0.85733 0.91738 0.82667 0.86229 0.83078 0.91389 0.87866 0.89346 0.84692 0.88053 0.91836 0.83556 0.82728 0.90243 0.90022 0.82443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -7.92 10.24 -78.72 -0.81 -8.72 16 3 C 0.13 3.53 6.69 22.53 0.15 3.68 16 4 C -0.19 -5.24 8.39 22.66 0.19 -5.05 16 5 C -0.02 -0.50 5.87 -20.17 -0.12 -0.62 16 6 C -0.05 -1.94 9.41 23.84 0.22 -1.72 16 7 C -0.17 -6.91 7.40 22.44 0.17 -6.74 16 8 C 0.45 23.30 7.32 85.12 0.62 23.92 16 9 O -0.65 -39.03 15.80 -4.61 -0.07 -39.10 16 10 N -0.42 -21.82 2.93 -622.93 -1.82 -23.64 16 11 C -0.34 -19.58 9.22 84.13 0.78 -18.81 16 12 H 0.07 4.35 7.36 -2.91 -0.02 4.33 16 13 C 0.01 0.55 5.06 84.97 0.43 0.98 16 14 N -0.87 -43.49 10.08 21.69 0.22 -43.27 16 15 Si 0.98 41.95 29.56 68.60 2.03 43.98 16 16 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 C 0.11 4.51 3.57 44.99 0.16 4.67 16 20 C -0.19 -5.94 7.83 30.62 0.24 -5.70 16 21 C -0.15 -5.57 8.96 30.62 0.27 -5.29 16 22 C -0.14 -3.91 9.70 22.70 0.22 -3.69 16 23 C 0.08 2.20 6.48 22.51 0.15 2.34 16 24 C 0.01 0.25 6.52 22.78 0.15 0.40 16 25 O -0.31 -7.45 10.16 -70.84 -0.72 -8.17 16 26 C 0.01 0.17 7.26 72.14 0.52 0.69 16 27 C 0.01 0.17 7.26 72.14 0.52 0.69 16 28 O -0.32 -7.06 10.41 -83.17 -0.87 -7.92 16 29 H 0.07 1.02 7.65 -2.39 -0.02 1.00 16 30 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.06 1.01 7.65 -2.39 -0.02 0.99 16 32 H 0.16 3.71 4.37 -2.91 -0.01 3.70 16 33 H 0.12 4.63 7.46 -2.91 -0.02 4.61 16 34 H 0.15 5.01 3.16 -2.91 -0.01 5.00 16 35 H 0.28 12.94 8.31 -92.71 -0.77 12.17 16 36 H 0.10 4.62 7.66 -2.39 -0.02 4.60 16 37 H 0.09 2.88 7.07 -2.39 -0.02 2.87 16 38 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 40 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 42 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -75.10 371.16 4.78 -70.31 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 1.03 Total: 25.47 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 5.79 Total: -8.93 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: -1.61 Total: -66.91 kcal Atomic # 8 Polarization: -61.45 SS G_CDS: -2.46 Total: -63.92 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -75.10 4.78 -70.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491202826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.039 kcal (2) G-P(sol) polarization free energy of solvation -75.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds