Wall clock time and date at job start Wed Apr 1 2020 03:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00384 * 2 1 4 4 O 1.20826 * 119.99810 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00067 * 180.02562 * 3 2 1 6 6 H 1.09004 * 110.88467 * 297.56686 * 5 3 2 7 7 C 1.55159 * 111.00038 * 173.65064 * 5 3 2 8 8 C 1.54317 * 102.85754 * 206.22714 * 7 5 3 9 9 N 1.47019 * 107.27815 * 22.52723 * 8 7 5 10 10 C 1.34779 * 125.64933 * 180.97181 * 9 8 7 11 11 O 1.21721 * 120.00082 * 179.69246 * 10 9 8 12 12 C 1.46257 * 119.99784 * 359.68343 * 10 9 8 13 13 C 1.35025 * 119.99865 * 186.64324 * 12 10 9 14 14 C 1.46957 * 120.00101 * 13.83454 * 13 12 10 15 15 C 1.40025 * 120.10150 * 39.72385 * 14 13 12 16 16 C 1.37599 * 119.90008 * 180.02562 * 15 14 13 17 17 C 1.39174 * 120.10042 * 0.25319 * 16 15 14 18 18 O 1.35567 * 119.90060 * 179.72760 * 17 16 15 19 19 C 1.34786 * 116.99719 * 353.53922 * 18 17 16 20 20 H 1.08003 * 120.00000 * 5.13982 * 19 18 17 21 21 C 1.38718 * 119.99877 * 185.12759 * 19 18 17 22 22 N 1.31510 * 120.00112 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00100 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47001 * 59.99918 * 23 21 19 25 25 H 1.48496 * 109.47347 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46830 * 300.00072 * 23 21 19 27 27 C 1.39176 * 120.20004 * 359.49096 * 17 16 15 28 28 C 1.37599 * 120.10364 * 0.50887 * 27 17 16 29 29 C 1.47419 * 108.70248 * 0.70192 * 9 8 7 30 30 H 1.09004 * 109.47435 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47135 * 299.99659 * 1 2 3 32 32 H 1.09003 * 109.47352 * 60.00284 * 1 2 3 33 33 H 1.09003 * 110.72021 * 324.78161 * 7 5 3 34 34 H 1.08999 * 110.72222 * 87.88543 * 7 5 3 35 35 H 1.09000 * 109.98550 * 263.04076 * 8 7 5 36 36 H 1.09001 * 109.77498 * 141.88631 * 8 7 5 37 37 H 1.08005 * 119.99977 * 6.64818 * 12 10 9 38 38 H 1.08005 * 119.99983 * 193.82871 * 13 12 10 39 39 H 1.08004 * 120.05272 * 0.02562 * 15 14 13 40 40 H 1.08006 * 119.95026 * 179.97438 * 16 15 14 41 41 H 0.96998 * 120.00043 * 180.02562 * 22 21 19 42 42 H 1.08002 * 119.94908 * 180.25915 * 27 17 16 43 43 H 1.07999 * 120.05228 * 179.72024 * 28 27 17 44 44 H 1.09005 * 110.36941 * 94.94348 * 29 9 8 45 45 H 1.09006 * 110.36500 * 217.26341 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9794 0.8242 0.9020 7 6 4.0463 2.7415 -0.1607 8 6 5.4395 2.5787 -0.8040 9 7 5.4661 1.2637 -1.4611 10 6 6.5158 0.7371 -2.1223 11 8 6.4262 -0.3679 -2.6250 12 6 7.7624 1.4934 -2.2362 13 6 8.7665 1.0276 -3.0095 14 6 8.5137 -0.0588 -3.9663 15 6 7.3226 -0.0835 -4.7022 16 6 7.0899 -1.1029 -5.5966 17 6 8.0339 -2.1113 -5.7666 18 8 7.7981 -3.1167 -6.6449 19 6 6.5794 -3.1538 -7.2196 20 1 5.8721 -2.3582 -7.0375 21 6 6.2339 -4.2136 -8.0452 22 7 7.0952 -5.1825 -8.2667 23 14 4.5453 -4.2647 -8.8423 24 1 4.3675 -3.0672 -9.7024 25 1 4.4256 -5.4916 -9.6702 26 1 3.5002 -4.2761 -7.7874 27 6 9.2215 -2.0880 -5.0413 28 6 9.4628 -1.0726 -4.1447 29 6 4.1565 0.6139 -1.2713 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.3767 3.2969 -0.8175 34 1 4.1244 3.2299 0.8106 35 1 6.2120 2.6253 -0.0365 36 1 5.5992 3.3650 -1.5418 37 1 7.8799 2.4245 -1.7016 38 1 9.7554 1.4534 -2.9249 39 1 6.5876 0.6964 -4.5679 40 1 6.1713 -1.1230 -6.1643 41 1 6.8537 -5.9234 -8.8443 42 1 9.9531 -2.8704 -5.1795 43 1 10.3827 -1.0578 -3.5790 44 1 3.5121 0.8009 -2.1303 45 1 4.2836 -0.4578 -1.1174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491291023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:24 Heat of formation + Delta-G solvation = -81.188193 kcal Electronic energy + Delta-G solvation = -29351.962706 eV Core-core repulsion = 25108.780975 eV Total energy + Delta-G solvation = -4243.181731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.09974 -39.93180 -38.87789 -37.73017 -36.76633 -36.18609 -33.10112 -32.32897 -31.95678 -30.09155 -29.81674 -28.34746 -27.72939 -25.49663 -24.86223 -22.91998 -22.59160 -21.67461 -20.65007 -20.49053 -18.48565 -18.15979 -17.98707 -17.49182 -17.21682 -16.77891 -16.50490 -15.64813 -15.28944 -14.87532 -14.50666 -14.29185 -14.11701 -13.90658 -13.80185 -13.63001 -13.46532 -13.40027 -13.08929 -12.81644 -12.58403 -12.53718 -12.47210 -12.21428 -11.99658 -11.69137 -11.66223 -11.35513 -11.29098 -11.15100 -10.97682 -10.84233 -10.77115 -10.58763 -10.43159 -9.55114 -9.37086 -9.18738 -8.71712 -8.67368 -7.89962 -6.87196 -6.45968 -4.01061 1.19151 1.76034 2.26275 2.41709 2.72162 3.02898 3.13986 3.16793 3.18237 3.58347 3.85683 3.97700 4.13244 4.42175 4.67212 4.70473 4.77474 4.80385 4.83916 4.88274 4.95182 5.11138 5.19963 5.23804 5.31047 5.33490 5.39851 5.53424 5.54642 5.64598 5.69065 5.75594 5.84598 5.99115 6.09872 6.24776 6.33669 6.47133 6.63604 6.78024 7.03543 7.12990 7.32690 7.33190 7.46945 7.50893 7.57145 7.91905 8.01013 8.44812 8.99736 9.70633 10.71694 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009148 B = 0.002897 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.957538 B = 9662.227578 C =12275.722686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.476 3.524 4 O -0.504 6.504 5 C -0.101 4.101 6 H 0.124 0.876 7 C -0.114 4.114 8 C 0.104 3.896 9 N -0.626 5.626 10 C 0.559 3.441 11 O -0.507 6.507 12 C -0.270 4.270 13 C 0.033 3.967 14 C -0.196 4.196 15 C 0.019 3.981 16 C -0.245 4.245 17 C 0.173 3.827 18 O -0.171 6.171 19 C -0.389 4.389 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.211 4.211 28 C -0.042 4.042 29 C 0.123 3.877 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.271 0.729 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.589 15.804 17.887 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.318 3.682 4 O -0.391 6.391 5 C -0.120 4.120 6 H 0.142 0.858 7 C -0.152 4.152 8 C -0.020 4.020 9 N -0.363 5.363 10 C 0.352 3.648 11 O -0.382 6.382 12 C -0.291 4.291 13 C 0.013 3.987 14 C -0.197 4.197 15 C 0.001 3.999 16 C -0.264 4.264 17 C 0.118 3.882 18 O -0.073 6.073 19 C -0.465 4.465 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.230 4.230 28 C -0.061 4.061 29 C 0.000 4.000 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.081 0.919 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.089 0.911 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.656 15.014 17.312 23.862 hybrid contribution -1.262 0.176 -0.135 1.281 sum -7.918 15.189 17.177 24.258 Atomic orbital electron populations 1.23322 0.75916 1.04065 1.02577 1.86545 1.23738 1.33031 1.83642 1.23293 0.91315 0.81502 0.72092 1.90676 1.66957 1.36370 1.45116 1.22271 0.87680 0.99796 1.02301 0.85786 1.22645 0.95887 0.93835 1.02861 1.22016 0.97127 0.85909 0.96914 1.48451 1.12761 1.18417 1.56650 1.18220 0.82567 0.86456 0.77578 1.91015 1.81814 1.20124 1.45284 1.22502 0.95297 1.02794 1.08552 1.22349 0.96673 0.91155 0.88496 1.18308 0.97801 0.99666 1.03915 1.20589 0.92579 0.95643 0.91104 1.20957 1.02012 0.97715 1.05754 1.19544 0.93107 0.87787 0.87807 1.83897 1.33972 1.41780 1.47656 1.21361 0.89468 1.08607 1.27076 0.88937 1.25318 0.99734 0.94477 0.96958 1.70011 1.34861 1.09532 1.35006 0.85774 0.80343 0.78209 0.79102 1.19430 1.20210 1.19413 1.20004 0.98209 1.02398 1.02408 1.20653 0.96823 0.93060 0.95532 1.21941 0.84617 0.98917 0.94533 0.87799 0.91851 0.91685 0.89094 0.89073 0.90938 0.90805 0.86094 0.85942 0.88511 0.85839 0.91876 0.86594 0.87091 0.91132 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.44 10.55 -39.25 -0.41 -3.86 16 3 C 0.48 4.73 7.26 36.01 0.26 4.99 16 4 O -0.50 -6.02 15.54 -18.75 -0.29 -6.31 16 5 C -0.10 -0.83 3.54 -89.62 -0.32 -1.15 16 6 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 7 C -0.11 -0.79 6.03 -24.90 -0.15 -0.94 16 8 C 0.10 0.79 6.06 -3.07 -0.02 0.77 16 9 N -0.63 -7.33 3.33 -172.22 -0.57 -7.91 16 10 C 0.56 8.48 6.68 -13.04 -0.09 8.39 16 11 O -0.51 -10.08 12.45 5.17 0.06 -10.02 16 12 C -0.27 -3.45 9.38 -37.50 -0.35 -3.80 16 13 C 0.03 0.46 9.82 -37.19 -0.37 0.09 16 14 C -0.20 -3.62 4.63 -105.03 -0.49 -4.10 16 15 C 0.02 0.40 6.59 -39.15 -0.26 0.14 16 16 C -0.25 -5.77 9.14 -39.47 -0.36 -6.13 16 17 C 0.17 4.40 6.66 -38.89 -0.26 4.14 16 18 O -0.17 -5.03 9.74 0.73 0.01 -5.02 16 19 C -0.39 -11.19 9.48 30.91 0.29 -10.90 16 20 H 0.09 2.49 5.19 -52.48 -0.27 2.22 16 21 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 22 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 23 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 27 C -0.21 -4.69 9.97 -39.47 -0.39 -5.09 16 28 C -0.04 -0.80 9.78 -39.15 -0.38 -1.18 16 29 C 0.12 1.36 6.36 -2.53 -0.02 1.35 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 32 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 33 H 0.09 0.72 7.50 -51.93 -0.39 0.33 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.12 1.11 7.37 -52.48 -0.39 0.73 16 38 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 39 H 0.10 1.86 6.78 -52.48 -0.36 1.50 16 40 H 0.12 2.93 5.63 -52.48 -0.30 2.63 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 42 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 43 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.07 0.82 8.03 -51.93 -0.42 0.41 16 45 H 0.09 1.16 8.04 -51.93 -0.42 0.74 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -35.70 381.57 -7.54 -43.24 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.89 Total: 4.07 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.92 Total: -11.08 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.19 Total: -32.67 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.63 Total: -25.21 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.70 -7.54 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491291023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.946 kcal (2) G-P(sol) polarization free energy of solvation -35.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds