Wall clock time and date at job start Wed Apr 1 2020 03:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00384 * 2 1 4 4 O 1.20826 * 119.99810 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00067 * 180.02562 * 3 2 1 6 6 H 1.09004 * 110.88467 * 297.56686 * 5 3 2 7 7 C 1.55159 * 111.00038 * 173.65064 * 5 3 2 8 8 C 1.54317 * 102.85754 * 206.22714 * 7 5 3 9 9 N 1.47019 * 107.27815 * 22.52723 * 8 7 5 10 10 C 1.34779 * 125.64933 * 180.97181 * 9 8 7 11 11 O 1.21721 * 120.00082 * 179.69246 * 10 9 8 12 12 C 1.46257 * 119.99784 * 359.68343 * 10 9 8 13 13 C 1.35025 * 119.99865 * 186.64324 * 12 10 9 14 14 C 1.46957 * 120.00101 * 13.83454 * 13 12 10 15 15 C 1.40025 * 120.10150 * 39.72385 * 14 13 12 16 16 C 1.37599 * 119.90008 * 180.02562 * 15 14 13 17 17 C 1.39174 * 120.10042 * 0.25319 * 16 15 14 18 18 O 1.35567 * 119.90060 * 179.72760 * 17 16 15 19 19 C 1.34786 * 116.99719 * 353.53922 * 18 17 16 20 20 H 1.08003 * 120.00000 * 5.13982 * 19 18 17 21 21 C 1.38718 * 119.99877 * 185.12759 * 19 18 17 22 22 N 1.31510 * 120.00112 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00100 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47001 * 59.99918 * 23 21 19 25 25 H 1.48496 * 109.47347 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46830 * 300.00072 * 23 21 19 27 27 C 1.39176 * 120.20004 * 359.49096 * 17 16 15 28 28 C 1.37599 * 120.10364 * 0.50887 * 27 17 16 29 29 C 1.47419 * 108.70248 * 0.70192 * 9 8 7 30 30 H 1.09004 * 109.47435 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47135 * 299.99659 * 1 2 3 32 32 H 1.09003 * 109.47352 * 60.00284 * 1 2 3 33 33 H 1.09003 * 110.72021 * 324.78161 * 7 5 3 34 34 H 1.08999 * 110.72222 * 87.88543 * 7 5 3 35 35 H 1.09000 * 109.98550 * 263.04076 * 8 7 5 36 36 H 1.09001 * 109.77498 * 141.88631 * 8 7 5 37 37 H 1.08005 * 119.99977 * 6.64818 * 12 10 9 38 38 H 1.08005 * 119.99983 * 193.82871 * 13 12 10 39 39 H 1.08004 * 120.05272 * 0.02562 * 15 14 13 40 40 H 1.08006 * 119.95026 * 179.97438 * 16 15 14 41 41 H 0.96998 * 120.00043 * 180.02562 * 22 21 19 42 42 H 1.08002 * 119.94908 * 180.25915 * 27 17 16 43 43 H 1.07999 * 120.05228 * 179.72024 * 28 27 17 44 44 H 1.09005 * 110.36941 * 94.94348 * 29 9 8 45 45 H 1.09006 * 110.36500 * 217.26341 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9794 0.8242 0.9020 7 6 4.0463 2.7415 -0.1607 8 6 5.4395 2.5787 -0.8040 9 7 5.4661 1.2637 -1.4611 10 6 6.5158 0.7371 -2.1223 11 8 6.4262 -0.3679 -2.6250 12 6 7.7624 1.4934 -2.2362 13 6 8.7665 1.0276 -3.0095 14 6 8.5137 -0.0588 -3.9663 15 6 7.3226 -0.0835 -4.7022 16 6 7.0899 -1.1029 -5.5966 17 6 8.0339 -2.1113 -5.7666 18 8 7.7981 -3.1167 -6.6449 19 6 6.5794 -3.1538 -7.2196 20 1 5.8721 -2.3582 -7.0375 21 6 6.2339 -4.2136 -8.0452 22 7 7.0952 -5.1825 -8.2667 23 14 4.5453 -4.2647 -8.8423 24 1 4.3675 -3.0672 -9.7024 25 1 4.4256 -5.4916 -9.6702 26 1 3.5002 -4.2761 -7.7874 27 6 9.2215 -2.0880 -5.0413 28 6 9.4628 -1.0726 -4.1447 29 6 4.1565 0.6139 -1.2713 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.3767 3.2969 -0.8175 34 1 4.1244 3.2299 0.8106 35 1 6.2120 2.6253 -0.0365 36 1 5.5992 3.3650 -1.5418 37 1 7.8799 2.4245 -1.7016 38 1 9.7554 1.4534 -2.9249 39 1 6.5876 0.6964 -4.5679 40 1 6.1713 -1.1230 -6.1643 41 1 6.8537 -5.9234 -8.8443 42 1 9.9531 -2.8704 -5.1795 43 1 10.3827 -1.0578 -3.5790 44 1 3.5121 0.8009 -2.1303 45 1 4.2836 -0.4578 -1.1174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491291023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:23 Heat of formation + Delta-G solvation = -104.482120 kcal Electronic energy + Delta-G solvation = -29352.972807 eV Core-core repulsion = 25108.780975 eV Total energy + Delta-G solvation = -4244.191832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.90528 -41.12473 -40.48898 -38.89149 -37.90846 -37.44776 -34.62502 -33.98337 -33.05994 -31.78467 -30.53891 -29.74414 -28.54024 -27.38131 -26.01278 -24.00438 -23.60875 -23.33865 -21.86020 -21.35685 -19.89048 -19.53797 -19.03623 -18.91700 -18.20359 -17.95415 -17.39791 -16.69192 -16.50125 -16.37277 -16.21835 -15.61713 -15.45591 -15.37993 -14.98848 -14.69748 -14.53566 -14.43576 -14.38518 -14.01578 -13.93361 -13.71334 -13.55945 -13.48054 -13.11704 -13.03690 -12.72904 -12.56705 -12.44219 -12.38134 -12.20874 -12.14665 -11.95129 -11.83918 -11.66124 -11.24276 -10.97724 -10.71326 -10.37626 -9.80056 -9.45877 -8.56015 -8.50182 -6.17191 -0.05733 0.71783 0.96805 1.14108 1.30323 1.43760 1.47255 1.57397 2.12627 2.15193 2.43853 2.85699 3.16514 3.21284 3.41326 3.52844 3.74111 3.93926 4.03459 4.04774 4.10157 4.14929 4.18679 4.24176 4.25902 4.28604 4.55381 4.57952 4.65116 4.67134 4.69774 4.73947 4.81024 4.93202 5.04346 5.09516 5.11532 5.19768 5.23671 5.28319 5.37554 5.46330 5.67490 5.72653 5.87111 6.00972 6.25250 6.53527 6.58918 6.93494 7.30887 7.74526 8.72183 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009148 B = 0.002897 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.957538 B = 9662.227578 C =12275.722686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.476 3.524 4 O -0.526 6.526 5 C -0.090 4.090 6 H 0.146 0.854 7 C -0.107 4.107 8 C 0.098 3.902 9 N -0.620 5.620 10 C 0.543 3.457 11 O -0.568 6.568 12 C -0.233 4.233 13 C 0.013 3.987 14 C -0.167 4.167 15 C 0.015 3.985 16 C -0.260 4.260 17 C 0.128 3.872 18 O -0.227 6.227 19 C -0.417 4.417 20 H 0.095 0.905 21 C -0.020 4.020 22 N -0.917 5.917 23 Si 1.017 2.983 24 H -0.256 1.256 25 H -0.265 1.265 26 H -0.262 1.262 27 C -0.223 4.223 28 C -0.041 4.041 29 C 0.119 3.881 30 H 0.125 0.875 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.275 0.725 42 H 0.115 0.885 43 H 0.159 0.841 44 H 0.057 0.943 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 19.888 21.366 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.319 3.681 4 O -0.415 6.415 5 C -0.110 4.110 6 H 0.164 0.836 7 C -0.144 4.144 8 C -0.023 4.023 9 N -0.355 5.355 10 C 0.336 3.664 11 O -0.448 6.448 12 C -0.254 4.254 13 C -0.007 4.007 14 C -0.167 4.167 15 C -0.003 4.003 16 C -0.279 4.279 17 C 0.077 3.923 18 O -0.133 6.133 19 C -0.493 4.493 20 H 0.112 0.888 21 C -0.218 4.218 22 N -0.555 5.555 23 Si 0.836 3.164 24 H -0.180 1.180 25 H -0.189 1.189 26 H -0.186 1.186 27 C -0.242 4.242 28 C -0.059 4.059 29 C -0.005 4.005 30 H 0.143 0.857 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.137 0.863 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.192 0.808 38 H 0.192 0.808 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.133 0.867 43 H 0.177 0.823 44 H 0.075 0.925 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.367 19.191 20.865 29.055 hybrid contribution -1.351 -0.717 -0.757 1.706 sum -7.718 18.475 20.108 28.376 Atomic orbital electron populations 1.23559 0.74620 1.05624 1.02753 1.86543 1.25203 1.33128 1.83376 1.23594 0.91942 0.81194 0.71338 1.90665 1.67578 1.36964 1.46258 1.22281 0.86442 1.00821 1.01428 0.83635 1.22670 0.95134 0.92558 1.04088 1.22374 0.98382 0.83718 0.97874 1.48504 1.11902 1.19827 1.55260 1.18877 0.84071 0.86103 0.77308 1.91015 1.83134 1.22843 1.47849 1.22982 0.92585 1.02936 1.06861 1.22638 0.99514 0.90113 0.88394 1.18910 0.95628 0.99815 1.02378 1.20760 0.93996 0.95027 0.90565 1.20985 1.01336 0.98798 1.06789 1.20082 0.95057 0.88098 0.89089 1.83863 1.34605 1.44284 1.50563 1.21756 0.90046 1.09429 1.28042 0.88810 1.26590 1.04286 0.93630 0.97264 1.70147 1.37490 1.10796 1.37083 0.84684 0.74517 0.78982 0.78219 1.18009 1.18901 1.18632 1.20327 0.97208 1.03720 1.02954 1.21167 0.98740 0.91528 0.94489 1.21897 0.84680 0.98216 0.95724 0.85681 0.91103 0.92089 0.90176 0.86257 0.87854 0.89226 0.80843 0.80806 0.87346 0.87600 0.91632 0.86660 0.82302 0.92473 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.56 16 2 O -0.37 -6.88 10.55 -51.38 -0.54 -7.42 16 3 C 0.48 8.84 7.26 71.24 0.52 9.35 16 4 O -0.53 -11.85 15.54 21.96 0.34 -11.51 16 5 C -0.09 -1.27 3.54 -10.15 -0.04 -1.30 16 6 H 0.15 1.44 8.14 -2.38 -0.02 1.43 16 7 C -0.11 -1.05 6.03 31.78 0.19 -0.86 16 8 C 0.10 0.98 6.06 86.73 0.53 1.50 16 9 N -0.62 -12.58 3.33 -817.00 -2.72 -15.30 16 10 C 0.54 14.80 6.68 86.33 0.58 15.38 16 11 O -0.57 -22.27 12.45 -4.42 -0.05 -22.32 16 12 C -0.23 -4.53 9.38 23.62 0.22 -4.31 16 13 C 0.01 0.28 9.82 23.82 0.23 0.51 16 14 C -0.17 -5.73 4.63 -20.13 -0.09 -5.82 16 15 C 0.01 0.61 6.59 22.55 0.15 0.76 16 16 C -0.26 -13.02 9.14 22.34 0.20 -12.81 16 17 C 0.13 6.99 6.66 22.72 0.15 7.14 16 18 O -0.23 -14.62 9.74 -20.29 -0.20 -14.81 16 19 C -0.42 -26.02 9.48 67.93 0.64 -25.38 16 20 H 0.09 5.53 5.19 -2.91 -0.02 5.52 16 21 C -0.02 -1.19 5.49 84.86 0.47 -0.72 16 22 N -0.92 -58.33 13.67 21.62 0.30 -58.03 16 23 Si 1.02 45.16 29.55 68.60 2.03 47.19 16 24 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 25 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 26 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 27 C -0.22 -10.28 9.97 22.34 0.22 -10.06 16 28 C -0.04 -1.48 9.78 22.55 0.22 -1.26 16 29 C 0.12 2.51 6.36 86.86 0.55 3.06 16 30 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 32 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 33 H 0.08 1.02 7.50 -2.39 -0.02 1.00 16 34 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.10 0.52 8.12 -2.39 -0.02 0.50 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.17 1.66 7.37 -2.91 -0.02 1.64 16 38 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.11 4.11 6.78 -2.91 -0.02 4.09 16 40 H 0.11 5.51 5.63 -2.91 -0.02 5.49 16 41 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 42 H 0.12 5.17 8.06 -2.91 -0.02 5.15 16 43 H 0.16 4.15 8.06 -2.91 -0.02 4.12 16 44 H 0.06 1.35 8.03 -2.38 -0.02 1.33 16 45 H 0.07 1.84 8.04 -2.38 -0.02 1.82 16 Total: -1.00 -88.89 381.57 6.11 -82.78 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 1.02 Total: 22.68 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 5.94 Total: -23.26 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -2.42 Total: -73.33 kcal Atomic # 8 Polarization: -55.61 SS G_CDS: -0.45 Total: -56.07 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -88.89 6.11 -82.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491291023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.701 kcal (2) G-P(sol) polarization free energy of solvation -88.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds