Wall clock time and date at job start Wed Apr 1 2020 03:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35947 * 117.00112 * 2 1 4 4 C 1.38084 * 120.00272 * 359.97438 * 3 2 1 5 5 C 1.39971 * 119.84202 * 180.02562 * 4 3 2 6 6 C 1.46968 * 120.08039 * 179.97438 * 5 4 3 7 7 C 1.35023 * 119.99971 * 180.02562 * 6 5 4 8 8 C 1.46260 * 120.00082 * 180.02562 * 7 6 5 9 9 O 1.21724 * 119.99842 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00363 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00393 * 179.97438 * 10 8 7 12 12 H 1.09005 * 115.51020 * 9.41834 * 11 10 8 13 13 C 1.52999 * 117.43553 * 154.78851 * 11 10 8 14 14 H 1.08993 * 119.80434 * 354.34797 * 13 11 10 15 15 C 1.54481 * 118.06645 * 198.08573 * 13 11 10 16 16 O 1.44425 * 104.80253 * 321.13300 * 15 13 11 17 17 C 1.44433 * 105.27352 * 319.48474 * 16 15 13 18 18 C 1.52998 * 117.43624 * 224.04826 * 11 10 8 19 19 H 1.09002 * 119.80932 * 4.63219 * 18 11 10 20 20 C 1.40038 * 119.84367 * 0.25891 * 5 4 3 21 21 C 1.37654 * 119.99425 * 359.48754 * 20 5 4 22 22 C 1.39051 * 120.16373 * 0.51065 * 21 20 5 23 23 O 1.35614 * 119.92194 * 179.71553 * 22 21 20 24 24 C 1.34756 * 116.99914 * 354.38579 * 23 22 21 25 25 H 1.07999 * 120.00230 * 5.06241 * 24 23 22 26 26 C 1.38704 * 120.00072 * 185.05743 * 24 23 22 27 27 N 1.31520 * 120.00476 * 179.97438 * 26 24 23 28 28 Si 1.86806 * 120.00004 * 0.02562 * 26 24 23 29 29 H 1.48499 * 109.46928 * 89.99771 * 28 26 24 30 30 H 1.48498 * 109.47174 * 209.99863 * 28 26 24 31 31 H 1.48492 * 109.46945 * 329.99887 * 28 26 24 32 32 H 1.09002 * 109.46886 * 299.99986 * 1 2 3 33 33 H 1.09006 * 109.46970 * 59.99699 * 1 2 3 34 34 H 1.08992 * 109.47256 * 179.97438 * 1 2 3 35 35 H 1.07994 * 120.07766 * 0.02562 * 4 3 2 36 36 H 1.07998 * 119.99853 * 0.02562 * 6 5 4 37 37 H 1.07998 * 120.00251 * 359.72124 * 7 6 5 38 38 H 0.97007 * 119.99654 * 0.02562 * 10 8 7 39 39 H 1.09004 * 110.37307 * 79.95786 * 15 13 11 40 40 H 1.08998 * 110.37346 * 202.29931 * 15 13 11 41 41 H 1.08999 * 110.37279 * 159.34778 * 17 16 15 42 42 H 1.08999 * 110.37100 * 281.57351 * 17 16 15 43 43 H 1.07992 * 119.99827 * 179.74782 * 20 5 4 44 44 H 1.08003 * 119.91376 * 180.23094 * 21 20 5 45 45 H 0.96999 * 120.00622 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3694 -0.0005 5 6 1.9333 3.6148 -0.0011 6 6 1.1380 4.8507 -0.0022 7 6 1.7561 6.0512 -0.0033 8 6 0.9648 7.2812 -0.0038 9 8 -0.2511 7.2226 -0.0029 10 7 1.5816 8.4794 -0.0043 11 6 0.7890 9.7114 -0.0055 12 1 -0.2813 9.5812 0.1551 13 6 1.4405 10.9694 0.5724 14 1 2.4196 10.9033 1.0466 15 6 0.5219 12.1444 0.9746 16 8 -0.4942 12.1861 -0.0510 17 6 0.2054 11.9387 -1.2900 18 6 1.2288 10.8317 -0.9501 19 1 2.0553 10.6648 -1.6409 20 6 3.3321 3.6803 -0.0066 21 6 4.0753 2.5216 -0.0007 22 6 3.4406 1.2844 -0.0001 23 8 4.1776 0.1460 -0.0002 24 6 5.5131 0.2819 -0.1184 25 1 5.9573 1.2663 -0.1251 26 6 6.3173 -0.8426 -0.2312 27 7 7.6207 -0.7101 -0.3470 28 14 5.5490 -2.5453 -0.2201 29 1 5.2178 -2.9479 -1.6105 30 1 6.5090 -3.5177 0.3615 31 1 4.3097 -2.5238 0.5976 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 0.2158 2.3144 -0.0005 36 1 0.0593 4.7987 -0.0022 37 1 2.8348 6.1032 0.0013 38 1 2.5506 8.5261 -0.0047 39 1 0.0702 11.9568 1.9487 40 1 1.0844 13.0779 0.9896 41 1 -0.4893 11.5930 -2.0556 42 1 0.7178 12.8412 -1.6233 43 1 3.8277 4.6398 -0.0111 44 1 5.1541 2.5737 -0.0012 45 1 8.1831 -1.4964 -0.4263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492014298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:21 Heat of formation + Delta-G solvation = -59.453951 kcal Electronic energy + Delta-G solvation = -28186.231257 eV Core-core repulsion = 23943.991993 eV Total energy + Delta-G solvation = -4242.239264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.91287 -39.93022 -39.27948 -37.89604 -36.76511 -35.64787 -33.18838 -32.72408 -32.37551 -29.88886 -29.11940 -28.94327 -26.85626 -26.01171 -25.32074 -23.45798 -21.95440 -21.21605 -21.12295 -20.93189 -19.30608 -18.19044 -17.99223 -17.39689 -17.11437 -16.38452 -16.21637 -15.66344 -15.59547 -15.39175 -15.16852 -14.72773 -14.65466 -14.42119 -14.00069 -13.84411 -13.81297 -13.42270 -13.28436 -13.02180 -12.56260 -12.36299 -12.23908 -12.10917 -11.98620 -11.97656 -11.64006 -11.46349 -11.14215 -11.01681 -10.91793 -10.78283 -10.57626 -10.32936 -10.10141 -9.91731 -9.63850 -9.52345 -9.06101 -8.90796 -8.12566 -7.09858 -6.61733 -4.21428 0.86212 1.96703 2.35095 2.75145 3.03668 3.15057 3.19476 3.36524 3.49924 3.60682 3.75568 4.12414 4.20202 4.25294 4.34176 4.46584 4.51926 4.53403 4.76146 4.92262 4.97019 4.98650 5.10213 5.17809 5.26630 5.27923 5.34251 5.39308 5.40165 5.40539 5.43432 5.59739 5.66389 5.69190 5.83997 6.02665 6.20326 6.29532 6.30046 6.34215 6.45814 6.71832 6.86474 7.10547 7.27852 7.37082 7.46205 7.75105 7.95001 8.17421 8.71735 9.33384 10.43835 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019949 B = 0.001798 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.248518 B =15570.190321 C =16750.625676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.052 3.948 4 C -0.135 4.135 5 C -0.158 4.158 6 C 0.036 3.964 7 C -0.274 4.274 8 C 0.561 3.439 9 O -0.551 6.551 10 N -0.704 5.704 11 C 0.133 3.867 12 H 0.140 0.860 13 C -0.213 4.213 14 H 0.127 0.873 15 C 0.075 3.925 16 O -0.373 6.373 17 C 0.075 3.925 18 C -0.213 4.213 19 H 0.126 0.874 20 C -0.062 4.062 21 C -0.210 4.210 22 C 0.156 3.844 23 O -0.188 6.188 24 C -0.388 4.388 25 H 0.111 0.889 26 C 0.067 3.933 27 N -0.865 5.865 28 Si 0.905 3.095 29 H -0.271 1.271 30 H -0.280 1.280 31 H -0.254 1.254 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.403 0.597 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.119 0.881 44 H 0.144 0.856 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.810 19.136 0.332 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.159 4.159 6 C 0.016 3.984 7 C -0.295 4.295 8 C 0.354 3.646 9 O -0.431 6.431 10 N -0.353 5.353 11 C 0.026 3.974 12 H 0.158 0.842 13 C -0.232 4.232 14 H 0.145 0.855 15 C -0.002 4.002 16 O -0.292 6.292 17 C -0.002 4.002 18 C -0.233 4.233 19 H 0.144 0.856 20 C -0.080 4.080 21 C -0.230 4.230 22 C 0.101 3.899 23 O -0.090 6.090 24 C -0.463 4.463 25 H 0.128 0.872 26 C -0.139 4.139 27 N -0.500 5.500 28 Si 0.730 3.270 29 H -0.196 1.196 30 H -0.206 1.206 31 H -0.177 1.177 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.237 0.763 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.137 0.863 44 H 0.161 0.839 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.613 18.531 0.361 21.871 hybrid contribution 0.758 -0.402 -0.099 0.863 sum -10.855 18.129 0.262 21.132 Atomic orbital electron populations 1.22942 0.79840 1.03173 1.00690 1.86177 1.19904 1.26344 1.89865 1.18036 0.89251 0.84661 1.07379 1.20897 0.98745 0.90832 1.04990 1.18229 0.92831 0.91450 1.13415 1.22255 0.99262 0.90881 0.85952 1.22440 0.99927 0.91395 1.15764 1.18416 0.87707 0.83574 0.74914 1.90791 1.14208 1.87510 1.50551 1.45181 1.09705 1.04333 1.76075 1.21302 0.97279 0.79671 0.99196 0.84214 1.24513 1.02858 0.98633 0.97235 0.85522 1.22909 0.89056 0.95442 0.92797 1.89191 1.30679 1.92892 1.16401 1.22909 0.94026 0.95311 0.87921 1.24613 1.03619 1.01416 0.93692 0.85602 1.20986 0.92413 0.97586 0.97035 1.20973 1.01254 0.90519 1.10227 1.18626 0.87714 0.87035 0.96569 1.83586 1.20470 1.27546 1.77441 1.20906 0.77156 0.97204 1.50988 0.87163 1.24527 0.94542 0.99786 0.95020 1.69619 1.03183 1.32109 1.45086 0.86160 0.79899 0.81318 0.79636 1.19612 1.20590 1.17746 0.93236 0.93225 0.88919 0.85610 0.85751 0.85526 0.76264 0.88478 0.91024 0.88452 0.91091 0.86329 0.83859 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.31 -5.95 10.28 -34.19 -0.35 -6.30 16 3 C 0.05 1.02 6.70 -39.12 -0.26 0.76 16 4 C -0.14 -2.25 8.77 -38.99 -0.34 -2.59 16 5 C -0.16 -2.55 5.87 -105.04 -0.62 -3.16 16 6 C 0.04 0.51 9.45 -37.19 -0.35 0.16 16 7 C -0.27 -3.50 9.41 -37.50 -0.35 -3.85 16 8 C 0.56 7.50 7.74 -13.04 -0.10 7.40 16 9 O -0.55 -9.30 15.80 5.17 0.08 -9.22 16 10 N -0.70 -7.02 5.56 -55.25 -0.31 -7.33 16 11 C 0.13 1.29 5.80 -67.94 -0.39 0.89 16 12 H 0.14 1.71 7.31 -51.93 -0.38 1.33 16 13 C -0.21 -1.51 7.17 -89.15 -0.64 -2.15 16 14 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 15 C 0.07 0.52 7.53 37.93 0.29 0.81 16 16 O -0.37 -3.51 11.31 -35.23 -0.40 -3.91 16 17 C 0.08 0.55 7.54 37.96 0.29 0.83 16 18 C -0.21 -1.59 7.17 -89.12 -0.64 -2.23 16 19 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 20 C -0.06 -1.03 9.40 -39.12 -0.37 -1.40 16 21 C -0.21 -4.20 9.14 -39.49 -0.36 -4.56 16 22 C 0.16 3.48 6.67 -38.76 -0.26 3.22 16 23 O -0.19 -4.82 8.35 -13.93 -0.12 -4.94 16 24 C -0.39 -10.38 9.94 30.90 0.31 -10.08 16 25 H 0.11 2.95 5.42 -52.49 -0.28 2.67 16 26 C 0.07 1.80 5.49 -17.51 -0.10 1.70 16 27 N -0.86 -23.70 13.96 55.48 0.77 -22.93 16 28 Si 0.91 21.04 28.62 -169.99 -4.86 16.17 16 29 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 30 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 31 H -0.25 -6.04 7.11 56.52 0.40 -5.64 16 32 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 33 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.13 1.73 6.28 -52.49 -0.33 1.40 16 36 H 0.12 1.74 7.52 -52.49 -0.39 1.34 16 37 H 0.13 1.37 6.06 -52.49 -0.32 1.05 16 38 H 0.40 2.91 8.81 -40.82 -0.36 2.55 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.12 1.61 6.15 -52.49 -0.32 1.29 16 44 H 0.14 2.93 5.62 -52.48 -0.29 2.64 16 45 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -31.87 382.58 -7.90 -39.77 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.57 Total: 5.79 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -2.91 Total: -12.88 kcal Atomic # 7 Polarization: -30.73 SS G_CDS: 0.47 Total: -30.26 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.78 Total: -24.37 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.86 Total: 16.17 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.87 -7.90 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492014298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.680 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds