Wall clock time and date at job start Wed Apr 1 2020 03:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35947 * 117.00112 * 2 1 4 4 C 1.38084 * 120.00272 * 359.97438 * 3 2 1 5 5 C 1.39971 * 119.84202 * 180.02562 * 4 3 2 6 6 C 1.46968 * 120.08039 * 179.97438 * 5 4 3 7 7 C 1.35023 * 119.99971 * 180.02562 * 6 5 4 8 8 C 1.46260 * 120.00082 * 180.02562 * 7 6 5 9 9 O 1.21724 * 119.99842 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00363 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00393 * 179.97438 * 10 8 7 12 12 H 1.09005 * 115.51020 * 9.41834 * 11 10 8 13 13 C 1.52999 * 117.43553 * 154.78851 * 11 10 8 14 14 H 1.08993 * 119.80434 * 354.34797 * 13 11 10 15 15 C 1.54481 * 118.06645 * 198.08573 * 13 11 10 16 16 O 1.44425 * 104.80253 * 321.13300 * 15 13 11 17 17 C 1.44433 * 105.27352 * 319.48474 * 16 15 13 18 18 C 1.52998 * 117.43624 * 224.04826 * 11 10 8 19 19 H 1.09002 * 119.80932 * 4.63219 * 18 11 10 20 20 C 1.40038 * 119.84367 * 0.25891 * 5 4 3 21 21 C 1.37654 * 119.99425 * 359.48754 * 20 5 4 22 22 C 1.39051 * 120.16373 * 0.51065 * 21 20 5 23 23 O 1.35614 * 119.92194 * 179.71553 * 22 21 20 24 24 C 1.34756 * 116.99914 * 354.38579 * 23 22 21 25 25 H 1.07999 * 120.00230 * 5.06241 * 24 23 22 26 26 C 1.38704 * 120.00072 * 185.05743 * 24 23 22 27 27 N 1.31520 * 120.00476 * 179.97438 * 26 24 23 28 28 Si 1.86806 * 120.00004 * 0.02562 * 26 24 23 29 29 H 1.48499 * 109.46928 * 89.99771 * 28 26 24 30 30 H 1.48498 * 109.47174 * 209.99863 * 28 26 24 31 31 H 1.48492 * 109.46945 * 329.99887 * 28 26 24 32 32 H 1.09002 * 109.46886 * 299.99986 * 1 2 3 33 33 H 1.09006 * 109.46970 * 59.99699 * 1 2 3 34 34 H 1.08992 * 109.47256 * 179.97438 * 1 2 3 35 35 H 1.07994 * 120.07766 * 0.02562 * 4 3 2 36 36 H 1.07998 * 119.99853 * 0.02562 * 6 5 4 37 37 H 1.07998 * 120.00251 * 359.72124 * 7 6 5 38 38 H 0.97007 * 119.99654 * 0.02562 * 10 8 7 39 39 H 1.09004 * 110.37307 * 79.95786 * 15 13 11 40 40 H 1.08998 * 110.37346 * 202.29931 * 15 13 11 41 41 H 1.08999 * 110.37279 * 159.34778 * 17 16 15 42 42 H 1.08999 * 110.37100 * 281.57351 * 17 16 15 43 43 H 1.07992 * 119.99827 * 179.74782 * 20 5 4 44 44 H 1.08003 * 119.91376 * 180.23094 * 21 20 5 45 45 H 0.96999 * 120.00622 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3694 -0.0005 5 6 1.9333 3.6148 -0.0011 6 6 1.1380 4.8507 -0.0022 7 6 1.7561 6.0512 -0.0033 8 6 0.9648 7.2812 -0.0038 9 8 -0.2511 7.2226 -0.0029 10 7 1.5816 8.4794 -0.0043 11 6 0.7890 9.7114 -0.0055 12 1 -0.2813 9.5812 0.1551 13 6 1.4405 10.9694 0.5724 14 1 2.4196 10.9033 1.0466 15 6 0.5219 12.1444 0.9746 16 8 -0.4942 12.1861 -0.0510 17 6 0.2054 11.9387 -1.2900 18 6 1.2288 10.8317 -0.9501 19 1 2.0553 10.6648 -1.6409 20 6 3.3321 3.6803 -0.0066 21 6 4.0753 2.5216 -0.0007 22 6 3.4406 1.2844 -0.0001 23 8 4.1776 0.1460 -0.0002 24 6 5.5131 0.2819 -0.1184 25 1 5.9573 1.2663 -0.1251 26 6 6.3173 -0.8426 -0.2312 27 7 7.6207 -0.7101 -0.3470 28 14 5.5490 -2.5453 -0.2201 29 1 5.2178 -2.9479 -1.6105 30 1 6.5090 -3.5177 0.3615 31 1 4.3097 -2.5238 0.5976 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 0.2158 2.3144 -0.0005 36 1 0.0593 4.7987 -0.0022 37 1 2.8348 6.1032 0.0013 38 1 2.5506 8.5261 -0.0047 39 1 0.0702 11.9568 1.9487 40 1 1.0844 13.0779 0.9896 41 1 -0.4893 11.5930 -2.0556 42 1 0.7178 12.8412 -1.6233 43 1 3.8277 4.6398 -0.0111 44 1 5.1541 2.5737 -0.0012 45 1 8.1831 -1.4964 -0.4263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492014298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:20 Heat of formation + Delta-G solvation = -81.141754 kcal Electronic energy + Delta-G solvation = -28187.171711 eV Core-core repulsion = 23943.991993 eV Total energy + Delta-G solvation = -4243.179718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61124 -41.40203 -40.30323 -39.43717 -38.17716 -36.45924 -34.68947 -34.15852 -33.49450 -31.32975 -30.29354 -29.65112 -27.99261 -27.42218 -26.47793 -24.66531 -23.38067 -22.40939 -21.83837 -21.64406 -20.43815 -19.91954 -19.52351 -18.32997 -18.15048 -17.61129 -17.05058 -16.90820 -16.73902 -16.30572 -16.29455 -16.00466 -15.69022 -15.64205 -15.56679 -15.43383 -15.01932 -14.78428 -14.25359 -14.17342 -13.88064 -13.53822 -13.41216 -13.31712 -12.98390 -12.81575 -12.76130 -12.66583 -12.55893 -12.20366 -12.12914 -12.11696 -12.05764 -11.44104 -11.22850 -11.07019 -11.04880 -10.62624 -10.62236 -9.85350 -9.51311 -8.61790 -8.53141 -6.20164 -0.38747 0.48949 1.02453 1.30830 1.34839 1.52942 1.92387 2.15625 2.27531 2.48046 2.60943 2.78901 2.93784 3.01759 3.09505 3.55084 3.62859 3.68718 3.88281 3.91804 3.92653 4.07298 4.13818 4.29772 4.34709 4.40575 4.43907 4.48356 4.50367 4.52531 4.67460 4.73384 4.76326 4.80182 4.86468 4.87685 4.89886 5.05259 5.11393 5.33114 5.44756 5.47156 5.57993 5.72420 5.76425 5.76564 5.99838 6.49352 6.53949 6.81191 7.18572 7.55969 8.57212 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019949 B = 0.001798 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.248518 B =15570.190321 C =16750.625676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.049 3.951 4 C -0.133 4.133 5 C -0.122 4.122 6 C 0.014 3.986 7 C -0.235 4.235 8 C 0.555 3.445 9 O -0.589 6.589 10 N -0.684 5.684 11 C 0.100 3.900 12 H 0.108 0.892 13 C -0.192 4.192 14 H 0.149 0.851 15 C 0.068 3.932 16 O -0.402 6.402 17 C 0.069 3.931 18 C -0.201 4.201 19 H 0.144 0.856 20 C -0.069 4.069 21 C -0.208 4.208 22 C 0.109 3.891 23 O -0.229 6.229 24 C -0.398 4.398 25 H 0.093 0.907 26 C 0.017 3.983 27 N -0.913 5.913 28 Si 0.962 3.038 29 H -0.268 1.268 30 H -0.265 1.265 31 H -0.268 1.268 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.161 0.839 36 H 0.130 0.870 37 H 0.154 0.846 38 H 0.420 0.580 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.156 0.844 44 H 0.129 0.871 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.565 22.409 0.317 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.004 3.996 4 C -0.152 4.152 5 C -0.123 4.123 6 C -0.006 4.006 7 C -0.256 4.256 8 C 0.347 3.653 9 O -0.472 6.472 10 N -0.333 5.333 11 C -0.007 4.007 12 H 0.126 0.874 13 C -0.211 4.211 14 H 0.167 0.833 15 C -0.008 4.008 16 O -0.321 6.321 17 C -0.007 4.007 18 C -0.221 4.221 19 H 0.161 0.839 20 C -0.087 4.087 21 C -0.228 4.228 22 C 0.058 3.942 23 O -0.136 6.136 24 C -0.474 4.474 25 H 0.110 0.890 26 C -0.183 4.183 27 N -0.552 5.552 28 Si 0.785 3.215 29 H -0.193 1.193 30 H -0.190 1.190 31 H -0.192 1.192 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.178 0.822 36 H 0.148 0.852 37 H 0.172 0.828 38 H 0.257 0.743 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.173 0.827 44 H 0.147 0.853 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.392 21.880 0.349 25.656 hybrid contribution 0.820 -0.776 -0.076 1.131 sum -12.572 21.104 0.273 24.567 Atomic orbital electron populations 1.23328 0.76760 1.05253 1.02291 1.86142 1.23184 1.26465 1.89824 1.18254 0.88626 0.86007 1.06707 1.21298 1.00389 0.89857 1.03653 1.18563 0.92773 0.92235 1.08738 1.22167 0.99471 0.90311 0.88629 1.22768 1.01201 0.90719 1.10894 1.18546 0.87217 0.84653 0.74880 1.90792 1.15937 1.88110 1.52327 1.44989 1.10577 1.03588 1.74195 1.21257 0.96071 0.80418 1.02924 0.87418 1.24583 1.03143 0.96301 0.97097 0.83291 1.23131 0.88922 0.96395 0.92381 1.89168 1.32275 1.93080 1.17627 1.23093 0.94109 0.96215 0.87298 1.24659 1.03624 0.99445 0.94342 0.83859 1.21299 0.92691 0.97890 0.96857 1.21067 1.00975 0.91210 1.09515 1.19261 0.89087 0.87259 0.98595 1.83552 1.19484 1.28906 1.81619 1.20823 0.78335 0.96657 1.51614 0.88993 1.25171 0.94975 1.02706 0.95428 1.69684 1.04016 1.32818 1.48705 0.85332 0.78624 0.78188 0.79350 1.19306 1.18964 1.19226 0.91482 0.91497 0.86903 0.82192 0.85173 0.82823 0.74275 0.88347 0.88718 0.88715 0.88827 0.82656 0.85345 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.34 -13.06 10.28 -78.98 -0.81 -13.87 16 3 C 0.05 1.93 6.70 22.57 0.15 2.08 16 4 C -0.13 -4.10 8.77 22.65 0.20 -3.90 16 5 C -0.12 -3.54 5.87 -20.13 -0.12 -3.66 16 6 C 0.01 0.34 9.45 23.82 0.23 0.57 16 7 C -0.24 -4.95 9.41 23.62 0.22 -4.73 16 8 C 0.56 13.04 7.74 86.33 0.67 13.71 16 9 O -0.59 -18.78 15.80 -4.43 -0.07 -18.85 16 10 N -0.68 -11.24 5.56 -446.92 -2.48 -13.72 16 11 C 0.10 1.70 5.80 44.99 0.26 1.96 16 12 H 0.11 2.59 7.31 -2.38 -0.02 2.57 16 13 C -0.19 -2.06 7.17 -9.84 -0.07 -2.13 16 14 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 15 C 0.07 0.76 7.53 72.49 0.55 1.31 16 16 O -0.40 -6.87 11.31 -148.98 -1.69 -8.56 16 17 C 0.07 0.83 7.54 72.50 0.55 1.38 16 18 C -0.20 -2.34 7.17 -9.82 -0.07 -2.41 16 19 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 20 C -0.07 -2.15 9.40 22.57 0.21 -1.94 16 21 C -0.21 -8.45 9.14 22.33 0.20 -8.25 16 22 C 0.11 5.02 6.67 22.80 0.15 5.17 16 23 O -0.23 -12.47 8.35 -6.51 -0.05 -12.52 16 24 C -0.40 -22.82 9.94 67.93 0.68 -22.14 16 25 H 0.09 5.35 5.42 -2.91 -0.02 5.33 16 26 C 0.02 0.97 5.49 84.85 0.47 1.43 16 27 N -0.91 -52.93 13.96 21.62 0.30 -52.62 16 28 Si 0.96 45.63 28.62 68.60 1.96 47.59 16 29 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 30 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 31 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 32 H 0.07 1.36 7.66 -2.39 -0.02 1.34 16 33 H 0.07 1.36 7.66 -2.38 -0.02 1.35 16 34 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.16 3.77 6.28 -2.91 -0.02 3.76 16 36 H 0.13 3.16 7.52 -2.91 -0.02 3.14 16 37 H 0.15 2.42 6.06 -2.91 -0.02 2.40 16 38 H 0.42 4.10 8.81 -92.70 -0.82 3.28 16 39 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 43 H 0.16 3.57 6.15 -2.91 -0.02 3.55 16 44 H 0.13 5.56 5.62 -2.91 -0.02 5.54 16 45 H 0.29 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -75.72 382.58 2.78 -72.95 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.24 Total: 19.59 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 5.38 Total: -19.99 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: -2.18 Total: -66.35 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -2.62 Total: -53.79 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.96 Total: 47.59 kcal Total: -75.72 2.78 -72.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492014298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.195 kcal (2) G-P(sol) polarization free energy of solvation -75.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds