Wall clock time and date at job start Wed Apr 1 2020 03:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35949 * 117.00222 * 2 1 4 4 C 1.38081 * 120.00106 * 0.20856 * 3 2 1 5 5 C 1.39977 * 119.83686 * 180.25852 * 4 3 2 6 6 C 1.46968 * 120.07581 * 179.78799 * 5 4 3 7 7 C 1.35027 * 120.00167 * 312.07585 * 6 5 4 8 8 C 1.46256 * 119.99738 * 348.67448 * 7 6 5 9 9 O 1.21717 * 119.99848 * 352.82041 * 8 7 6 10 10 N 1.34780 * 119.99667 * 172.81760 * 8 7 6 11 11 C 1.46850 * 120.37932 * 5.54425 * 10 8 7 12 12 C 1.53895 * 108.51266 * 122.34609 * 11 10 8 13 13 C 1.51299 * 108.37006 * 49.64016 * 12 11 10 14 14 O 1.20752 * 120.80504 * 126.88615 * 13 12 11 15 15 C 1.51298 * 118.38358 * 306.91056 * 13 12 11 16 16 C 1.46855 * 120.37702 * 185.81602 * 10 8 7 17 17 C 1.40031 * 119.84388 * 359.50858 * 5 4 3 18 18 C 1.37640 * 120.00126 * 0.25979 * 17 5 4 19 19 C 1.39059 * 120.16238 * 359.97438 * 18 17 5 20 20 O 1.35614 * 119.92368 * 179.97438 * 19 18 17 21 21 C 1.34758 * 117.00102 * 6.07923 * 20 19 18 22 22 H 1.08008 * 119.99884 * 354.87467 * 21 20 19 23 23 C 1.38708 * 120.00291 * 174.87880 * 21 20 19 24 24 N 1.31510 * 119.99881 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99991 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46886 * 89.99826 * 25 23 21 27 27 H 1.48495 * 109.47393 * 210.00158 * 25 23 21 28 28 H 1.48502 * 109.47318 * 330.00479 * 25 23 21 29 29 H 1.08999 * 109.47163 * 59.99864 * 1 2 3 30 30 H 1.08999 * 109.47764 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47354 * 300.00662 * 1 2 3 32 32 H 1.07998 * 120.07754 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.99880 * 131.80496 * 6 5 4 34 34 H 1.08000 * 120.00006 * 168.67381 * 7 6 5 35 35 H 1.09004 * 109.58635 * 242.16117 * 11 10 8 36 36 H 1.08999 * 109.59327 * 2.59164 * 11 10 8 37 37 H 1.09003 * 109.80687 * 289.86128 * 12 11 10 38 38 H 1.08995 * 109.59095 * 169.29560 * 12 11 10 39 39 H 1.08996 * 109.67304 * 293.22049 * 15 13 12 40 40 H 1.09003 * 109.69459 * 172.71252 * 15 13 12 41 41 H 1.09001 * 109.58847 * 357.41446 * 16 10 8 42 42 H 1.08999 * 109.58283 * 117.83835 * 16 10 8 43 43 H 1.08001 * 120.00094 * 180.23249 * 17 5 4 44 44 H 1.07998 * 119.92070 * 180.02562 * 18 17 5 45 45 H 0.97003 * 119.99744 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3694 0.0044 5 6 1.9333 3.6147 -0.0011 6 6 1.1380 4.8507 -0.0013 7 6 0.1105 4.9923 -0.8657 8 6 -0.0610 4.0376 -1.9604 9 8 0.7913 3.1949 -2.1721 10 7 -1.1629 4.0911 -2.7347 11 6 -2.1372 5.1768 -2.5659 12 6 -2.2842 5.9146 -3.9084 13 6 -2.5166 4.8870 -4.9943 14 8 -3.4611 4.9791 -5.7409 15 6 -1.5370 3.7410 -5.1215 16 6 -1.4058 3.0610 -3.7528 17 6 3.3321 3.6802 -0.0006 18 6 4.0753 2.5217 -0.0001 19 6 3.4405 1.2844 0.0004 20 8 4.1775 0.1460 0.0004 21 6 5.5123 0.2813 0.1270 22 1 5.9566 1.2657 0.1393 23 6 6.3157 -0.8436 0.2415 24 7 5.7748 -2.0422 0.2270 25 14 8.1660 -0.6560 0.4163 26 1 8.5202 -0.5617 1.8554 27 1 8.8420 -1.8342 -0.1837 28 1 8.6069 0.5772 -0.2837 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2156 2.3144 0.0082 33 1 1.3728 5.6439 0.6931 34 1 -0.5847 5.8105 -0.7488 35 1 -3.0995 4.7610 -2.2670 36 1 -1.7835 5.8700 -1.8027 37 1 -1.3747 6.4759 -4.1229 38 1 -3.1336 6.5959 -3.8599 39 1 -0.5657 4.1218 -5.4368 40 1 -1.9051 3.0228 -5.8543 41 1 -0.5705 2.3611 -3.7711 42 1 -2.3273 2.5274 -3.5200 43 1 3.8278 4.6397 -0.0010 44 1 5.1540 2.5737 0.0007 45 1 6.3367 -2.8289 0.3067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492261614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:13 Heat of formation + Delta-G solvation = -65.793629 kcal Electronic energy + Delta-G solvation = -30208.029081 eV Core-core repulsion = 25965.514908 eV Total energy + Delta-G solvation = -4242.514173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.64854 -39.67237 -39.06477 -37.45758 -36.77739 -35.81979 -33.23217 -32.27981 -31.74854 -31.32089 -29.40261 -28.42862 -26.64276 -25.50467 -24.83346 -24.32851 -22.66042 -21.47619 -21.03707 -19.81135 -18.48851 -18.02894 -17.77711 -17.03072 -16.23055 -15.98869 -15.76583 -15.53181 -15.30688 -15.13087 -15.08004 -15.00261 -14.55898 -14.15261 -13.88989 -13.70196 -13.46792 -13.37610 -13.21754 -12.99661 -12.70945 -12.37867 -12.34190 -12.12951 -11.86735 -11.72461 -11.64986 -11.51503 -11.28342 -11.03204 -10.94753 -10.60545 -10.46044 -10.33122 -9.88319 -9.53593 -9.41143 -9.27331 -8.87316 -8.71814 -7.58681 -6.76341 -6.43705 -3.96834 1.13227 1.55487 2.35887 2.53165 2.80206 3.14313 3.14987 3.19691 3.45300 3.69314 3.97079 4.12010 4.35813 4.39343 4.42884 4.59258 4.70610 4.79307 4.93125 4.96519 5.10313 5.14191 5.20287 5.27235 5.32119 5.46093 5.50875 5.55761 5.57900 5.63693 5.66023 5.73937 5.79278 5.90276 6.15562 6.22437 6.33708 6.44297 6.51461 6.69000 7.00658 7.07654 7.14880 7.26723 7.32952 7.38818 7.68732 7.97788 8.27651 8.33530 9.00399 9.73305 10.73353 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.002569 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.365647 B =10895.481369 C =11162.961137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.304 6.304 3 C 0.049 3.951 4 C -0.092 4.092 5 C -0.153 4.153 6 C 0.030 3.970 7 C -0.268 4.268 8 C 0.543 3.457 9 O -0.502 6.502 10 N -0.626 5.626 11 C 0.116 3.884 12 C -0.187 4.187 13 C 0.363 3.637 14 O -0.459 6.459 15 C -0.185 4.185 16 C 0.119 3.881 17 C -0.066 4.066 18 C -0.226 4.226 19 C 0.150 3.850 20 O -0.158 6.158 21 C -0.389 4.389 22 H 0.094 0.906 23 C 0.039 3.961 24 N -0.853 5.853 25 Si 0.942 3.058 26 H -0.273 1.273 27 H -0.277 1.277 28 H -0.267 1.267 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.133 0.867 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.956 15.524 -3.246 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.218 6.218 3 C 0.005 3.995 4 C -0.112 4.112 5 C -0.154 4.154 6 C 0.011 3.989 7 C -0.289 4.289 8 C 0.335 3.665 9 O -0.376 6.376 10 N -0.362 5.362 11 C -0.008 4.008 12 C -0.226 4.226 13 C 0.239 3.761 14 O -0.332 6.332 15 C -0.224 4.224 16 C -0.004 4.004 17 C -0.085 4.085 18 C -0.246 4.246 19 C 0.095 3.905 20 O -0.060 6.060 21 C -0.465 4.465 22 H 0.111 0.889 23 C -0.166 4.166 24 N -0.487 5.487 25 Si 0.766 3.234 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.191 1.191 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.127 0.873 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.089 0.911 43 H 0.126 0.874 44 H 0.150 0.850 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.856 14.380 -3.763 21.015 hybrid contribution 0.568 0.508 -0.056 0.764 sum -14.289 14.888 -3.819 20.986 Atomic orbital electron populations 1.22818 0.80711 1.02576 0.99987 1.86213 1.19128 1.26530 1.89949 1.17958 0.89327 0.84388 1.07860 1.20468 0.97433 0.90684 1.02582 1.18030 0.92782 0.91350 1.13228 1.22382 0.89958 0.94294 0.92281 1.22727 1.03566 1.03249 0.99329 1.18535 0.80624 0.84667 0.82678 1.91019 1.39991 1.36690 1.69949 1.48111 1.23226 1.27200 1.37636 1.21787 0.93335 0.89605 0.96067 1.22829 1.05271 0.98748 0.95718 1.24777 0.83498 0.85973 0.81883 1.90419 1.28689 1.73683 1.40410 1.22722 1.01299 0.98428 0.99905 1.21456 1.03427 0.90811 0.84707 1.20653 0.92118 0.97074 0.98646 1.20724 1.00363 0.90876 1.12627 1.18826 0.88234 0.87603 0.95823 1.83994 1.19516 1.25720 1.76761 1.21425 0.78752 0.94798 1.51570 0.88886 1.25334 1.00510 0.94222 0.96521 1.70052 1.36264 0.97656 1.44715 0.85702 0.80443 0.78419 0.78811 1.19824 1.20241 1.19106 0.93767 0.89287 0.93986 0.87304 0.85737 0.85678 0.90902 0.87943 0.87804 0.88326 0.87821 0.88305 0.87373 0.91146 0.87363 0.84950 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.81 101.05 0.99 1.56 16 2 O -0.30 -7.01 10.28 -34.19 -0.35 -7.36 16 3 C 0.05 1.14 6.70 -39.12 -0.26 0.88 16 4 C -0.09 -1.78 5.77 -38.99 -0.23 -2.00 16 5 C -0.15 -2.68 4.34 -105.04 -0.46 -3.13 16 6 C 0.03 0.39 9.77 -37.19 -0.36 0.02 16 7 C -0.27 -2.95 9.25 -37.50 -0.35 -3.30 16 8 C 0.54 7.18 6.79 -13.04 -0.09 7.09 16 9 O -0.50 -9.00 11.90 5.17 0.06 -8.94 16 10 N -0.63 -6.16 2.90 -174.03 -0.50 -6.66 16 11 C 0.12 0.73 6.37 -3.39 -0.02 0.71 16 12 C -0.19 -1.16 6.36 -27.12 -0.17 -1.34 16 13 C 0.36 3.25 6.68 -28.45 -0.19 3.06 16 14 O -0.46 -5.62 17.89 6.01 0.11 -5.51 16 15 C -0.18 -1.55 6.34 -27.39 -0.17 -1.72 16 16 C 0.12 1.13 6.45 -3.65 -0.02 1.11 16 17 C -0.07 -1.24 9.78 -39.13 -0.38 -1.62 16 18 C -0.23 -5.04 9.14 -39.50 -0.36 -5.40 16 19 C 0.15 3.85 6.67 -38.76 -0.26 3.59 16 20 O -0.16 -4.70 9.52 -13.94 -0.13 -4.83 16 21 C -0.39 -11.06 9.48 30.91 0.29 -10.77 16 22 H 0.09 2.41 5.19 -52.48 -0.27 2.14 16 23 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 24 N -0.85 -25.43 13.67 55.48 0.76 -24.67 16 25 Si 0.94 20.59 29.55 -169.99 -5.02 15.56 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 29 H 0.04 0.68 7.67 -51.93 -0.40 0.28 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 32 H 0.11 1.88 5.67 -52.49 -0.30 1.58 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.13 0.89 5.84 -52.49 -0.31 0.59 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.48 5.28 -51.93 -0.27 0.21 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.11 1.27 6.96 -51.93 -0.36 0.91 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.13 2.89 5.62 -52.49 -0.29 2.60 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -36.51 373.51 -7.13 -43.64 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.54 Total: 3.41 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -2.14 Total: -10.26 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.25 Total: -31.34 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.32 Total: -26.65 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.51 -7.13 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492261614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.149 kcal (2) G-P(sol) polarization free energy of solvation -36.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds