Wall clock time and date at job start Wed Apr 1 2020 03:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35949 * 117.00222 * 2 1 4 4 C 1.38081 * 120.00106 * 0.20856 * 3 2 1 5 5 C 1.39977 * 119.83686 * 180.25852 * 4 3 2 6 6 C 1.46968 * 120.07581 * 179.78799 * 5 4 3 7 7 C 1.35027 * 120.00167 * 312.07585 * 6 5 4 8 8 C 1.46256 * 119.99738 * 348.67448 * 7 6 5 9 9 O 1.21717 * 119.99848 * 352.82041 * 8 7 6 10 10 N 1.34780 * 119.99667 * 172.81760 * 8 7 6 11 11 C 1.46850 * 120.37932 * 5.54425 * 10 8 7 12 12 C 1.53895 * 108.51266 * 122.34609 * 11 10 8 13 13 C 1.51299 * 108.37006 * 49.64016 * 12 11 10 14 14 O 1.20752 * 120.80504 * 126.88615 * 13 12 11 15 15 C 1.51298 * 118.38358 * 306.91056 * 13 12 11 16 16 C 1.46855 * 120.37702 * 185.81602 * 10 8 7 17 17 C 1.40031 * 119.84388 * 359.50858 * 5 4 3 18 18 C 1.37640 * 120.00126 * 0.25979 * 17 5 4 19 19 C 1.39059 * 120.16238 * 359.97438 * 18 17 5 20 20 O 1.35614 * 119.92368 * 179.97438 * 19 18 17 21 21 C 1.34758 * 117.00102 * 6.07923 * 20 19 18 22 22 H 1.08008 * 119.99884 * 354.87467 * 21 20 19 23 23 C 1.38708 * 120.00291 * 174.87880 * 21 20 19 24 24 N 1.31510 * 119.99881 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99991 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46886 * 89.99826 * 25 23 21 27 27 H 1.48495 * 109.47393 * 210.00158 * 25 23 21 28 28 H 1.48502 * 109.47318 * 330.00479 * 25 23 21 29 29 H 1.08999 * 109.47163 * 59.99864 * 1 2 3 30 30 H 1.08999 * 109.47764 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47354 * 300.00662 * 1 2 3 32 32 H 1.07998 * 120.07754 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.99880 * 131.80496 * 6 5 4 34 34 H 1.08000 * 120.00006 * 168.67381 * 7 6 5 35 35 H 1.09004 * 109.58635 * 242.16117 * 11 10 8 36 36 H 1.08999 * 109.59327 * 2.59164 * 11 10 8 37 37 H 1.09003 * 109.80687 * 289.86128 * 12 11 10 38 38 H 1.08995 * 109.59095 * 169.29560 * 12 11 10 39 39 H 1.08996 * 109.67304 * 293.22049 * 15 13 12 40 40 H 1.09003 * 109.69459 * 172.71252 * 15 13 12 41 41 H 1.09001 * 109.58847 * 357.41446 * 16 10 8 42 42 H 1.08999 * 109.58283 * 117.83835 * 16 10 8 43 43 H 1.08001 * 120.00094 * 180.23249 * 17 5 4 44 44 H 1.07998 * 119.92070 * 180.02562 * 18 17 5 45 45 H 0.97003 * 119.99744 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3694 0.0044 5 6 1.9333 3.6147 -0.0011 6 6 1.1380 4.8507 -0.0013 7 6 0.1105 4.9923 -0.8657 8 6 -0.0610 4.0376 -1.9604 9 8 0.7913 3.1949 -2.1721 10 7 -1.1629 4.0911 -2.7347 11 6 -2.1372 5.1768 -2.5659 12 6 -2.2842 5.9146 -3.9084 13 6 -2.5166 4.8870 -4.9943 14 8 -3.4611 4.9791 -5.7409 15 6 -1.5370 3.7410 -5.1215 16 6 -1.4058 3.0610 -3.7528 17 6 3.3321 3.6802 -0.0006 18 6 4.0753 2.5217 -0.0001 19 6 3.4405 1.2844 0.0004 20 8 4.1775 0.1460 0.0004 21 6 5.5123 0.2813 0.1270 22 1 5.9566 1.2657 0.1393 23 6 6.3157 -0.8436 0.2415 24 7 5.7748 -2.0422 0.2270 25 14 8.1660 -0.6560 0.4163 26 1 8.5202 -0.5617 1.8554 27 1 8.8420 -1.8342 -0.1837 28 1 8.6069 0.5772 -0.2837 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2156 2.3144 0.0082 33 1 1.3728 5.6439 0.6931 34 1 -0.5847 5.8105 -0.7488 35 1 -3.0995 4.7610 -2.2670 36 1 -1.7835 5.8700 -1.8027 37 1 -1.3747 6.4759 -4.1229 38 1 -3.1336 6.5959 -3.8599 39 1 -0.5657 4.1218 -5.4368 40 1 -1.9051 3.0228 -5.8543 41 1 -0.5705 2.3611 -3.7711 42 1 -2.3273 2.5274 -3.5200 43 1 3.8278 4.6397 -0.0010 44 1 5.1540 2.5737 0.0007 45 1 6.3367 -2.8289 0.3067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492261614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:12 Heat of formation + Delta-G solvation = -91.264388 kcal Electronic energy + Delta-G solvation = -30209.133576 eV Core-core repulsion = 25965.514908 eV Total energy + Delta-G solvation = -4243.618668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.59568 -41.09232 -40.16257 -39.21589 -38.00886 -37.05750 -34.58159 -33.98887 -32.63708 -32.08139 -31.01515 -29.87232 -28.03355 -27.38128 -25.87828 -24.96565 -23.85070 -23.08268 -22.30890 -20.73337 -19.82511 -19.63185 -18.86423 -18.44091 -17.68712 -17.05785 -16.72948 -16.65667 -16.47892 -16.36784 -16.20427 -16.07160 -15.86059 -15.49471 -15.25372 -15.19235 -15.07188 -14.57516 -14.34811 -14.13815 -13.77555 -13.54148 -13.46896 -13.16284 -13.10833 -13.02032 -12.79962 -12.61254 -12.55553 -12.43392 -12.31857 -12.14935 -11.97435 -11.80902 -11.30192 -10.90138 -10.71352 -10.46217 -10.35548 -9.71938 -9.13040 -8.46914 -8.42231 -6.08072 -0.00126 0.71570 0.83256 1.06473 1.34826 1.46462 1.53479 2.00292 2.19584 2.43828 2.62286 2.87657 3.05623 3.20775 3.47026 3.64041 3.76206 3.81202 3.93407 4.04541 4.11037 4.14433 4.26868 4.32720 4.34648 4.35010 4.43484 4.59637 4.61250 4.63165 4.70493 4.77521 4.77690 4.82978 4.93153 5.00887 5.07148 5.13962 5.23698 5.31812 5.51123 5.58099 5.66597 5.79848 5.99689 6.12071 6.36935 6.47879 6.68342 7.00119 7.34423 7.85814 8.80273 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.002569 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.365647 B =10895.481369 C =11162.961137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.348 6.348 3 C 0.030 3.970 4 C -0.087 4.087 5 C -0.117 4.117 6 C 0.005 3.995 7 C -0.227 4.227 8 C 0.530 3.470 9 O -0.561 6.561 10 N -0.617 5.617 11 C 0.111 3.889 12 C -0.179 4.179 13 C 0.366 3.634 14 O -0.495 6.495 15 C -0.182 4.182 16 C 0.119 3.881 17 C -0.081 4.081 18 C -0.225 4.225 19 C 0.092 3.908 20 O -0.224 6.224 21 C -0.413 4.413 22 H 0.103 0.897 23 C -0.027 4.027 24 N -0.921 5.921 25 Si 1.022 2.978 26 H -0.261 1.261 27 H -0.272 1.272 28 H -0.251 1.251 29 H 0.052 0.948 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.174 0.826 34 H 0.183 0.817 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.150 0.850 44 H 0.126 0.874 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.455 20.919 -2.686 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C -0.015 4.015 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.014 4.014 7 C -0.247 4.247 8 C 0.322 3.678 9 O -0.440 6.440 10 N -0.351 5.351 11 C -0.011 4.011 12 C -0.217 4.217 13 C 0.244 3.756 14 O -0.371 6.371 15 C -0.220 4.220 16 C -0.005 4.005 17 C -0.099 4.099 18 C -0.245 4.245 19 C 0.041 3.959 20 O -0.130 6.130 21 C -0.489 4.489 22 H 0.120 0.880 23 C -0.224 4.224 24 N -0.559 5.559 25 Si 0.841 3.159 26 H -0.186 1.186 27 H -0.197 1.197 28 H -0.175 1.175 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.191 0.809 34 H 0.199 0.801 35 H 0.107 0.893 36 H 0.150 0.850 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.168 0.832 44 H 0.143 0.857 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.448 19.875 -3.210 26.641 hybrid contribution 0.773 -0.761 -0.391 1.154 sum -16.675 19.113 -3.600 25.619 Atomic orbital electron populations 1.23116 0.77645 1.04476 1.01233 1.86148 1.22529 1.27468 1.90229 1.18370 0.89107 0.85707 1.08278 1.20773 0.98284 0.90171 1.01356 1.18719 0.93014 0.93149 1.06856 1.22632 0.90088 0.93390 0.95326 1.23224 1.02219 1.02806 0.96493 1.19154 0.80645 0.84452 0.83509 1.91037 1.42287 1.39163 1.71528 1.48176 1.22844 1.27653 1.36386 1.22146 0.93193 0.88915 0.96806 1.22830 1.06705 0.97996 0.94151 1.25151 0.82336 0.86206 0.81903 1.90423 1.30070 1.74572 1.42061 1.22681 1.01416 0.98698 0.99255 1.21416 1.02840 0.90755 0.85448 1.21091 0.92905 0.97321 0.98559 1.20925 1.00510 0.91327 1.11714 1.19505 0.89567 0.88024 0.98800 1.83961 1.20043 1.27902 1.81115 1.21914 0.79269 0.95625 1.52128 0.87957 1.26678 1.06182 0.93505 0.95999 1.70220 1.38375 0.98717 1.48614 0.84552 0.73117 0.78907 0.79358 1.18566 1.19689 1.17460 0.92989 0.87334 0.91845 0.85087 0.80874 0.80052 0.89271 0.84997 0.86501 0.86434 0.87848 0.88260 0.90275 0.89702 0.83210 0.85656 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 9.81 113.37 1.11 2.10 16 2 O -0.35 -17.12 10.28 -79.00 -0.81 -17.93 16 3 C 0.03 1.46 6.70 22.57 0.15 1.61 16 4 C -0.09 -3.26 5.77 22.65 0.13 -3.13 16 5 C -0.12 -3.75 4.34 -20.13 -0.09 -3.84 16 6 C 0.00 0.09 9.77 23.82 0.23 0.32 16 7 C -0.23 -3.42 9.25 23.62 0.22 -3.20 16 8 C 0.53 11.83 6.79 86.33 0.59 12.42 16 9 O -0.56 -19.31 11.90 -4.40 -0.05 -19.36 16 10 N -0.62 -9.59 2.90 -822.71 -2.39 -11.98 16 11 C 0.11 0.73 6.37 86.61 0.55 1.28 16 12 C -0.18 -1.31 6.36 30.34 0.19 -1.12 16 13 C 0.37 5.51 6.68 29.48 0.20 5.71 16 14 O -0.50 -11.18 17.89 -1.43 -0.03 -11.20 16 15 C -0.18 -2.77 6.34 30.17 0.19 -2.58 16 16 C 0.12 2.06 6.45 86.44 0.56 2.62 16 17 C -0.08 -2.88 9.78 22.56 0.22 -2.66 16 18 C -0.23 -10.46 9.14 22.33 0.20 -10.25 16 19 C 0.09 5.05 6.67 22.80 0.15 5.20 16 20 O -0.22 -14.65 9.52 -6.53 -0.06 -14.71 16 21 C -0.41 -25.47 9.48 67.93 0.64 -24.83 16 22 H 0.10 5.73 5.19 -2.91 -0.02 5.71 16 23 C -0.03 -1.59 5.49 84.85 0.47 -1.12 16 24 N -0.92 -59.65 13.67 21.62 0.30 -59.35 16 25 Si 1.02 44.61 29.55 68.60 2.03 46.64 16 26 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 28 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 29 H 0.05 1.59 7.67 -2.39 -0.02 1.57 16 30 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.06 1.77 7.65 -2.39 -0.02 1.75 16 32 H 0.13 4.22 5.67 -2.91 -0.02 4.20 16 33 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.18 0.78 5.84 -2.91 -0.02 0.76 16 35 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.13 0.11 5.28 -2.39 -0.01 0.10 16 37 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.08 1.89 6.96 -2.39 -0.02 1.87 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 44 H 0.13 5.80 5.62 -2.91 -0.02 5.78 16 45 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -93.57 373.51 5.74 -87.83 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 1.04 Total: 21.55 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 5.72 Total: -21.48 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -2.09 Total: -71.33 kcal Atomic # 8 Polarization: -62.25 SS G_CDS: -0.95 Total: -63.20 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -93.57 5.74 -87.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492261614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.438 kcal (2) G-P(sol) polarization free energy of solvation -93.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds