Wall clock time and date at job start Wed Apr 1 2020 03:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00099 * 2 1 4 4 O 1.20825 * 120.00052 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99893 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47036 * 179.97438 * 5 3 2 7 7 C 1.34775 * 120.00010 * 90.00288 * 6 5 3 8 8 O 1.21720 * 119.99975 * 176.43412 * 7 6 5 9 9 C 1.46256 * 120.00016 * 356.42910 * 7 6 5 10 10 C 1.35023 * 120.00319 * 172.93269 * 9 7 6 11 11 C 1.46967 * 119.99613 * 345.82871 * 10 9 7 12 12 C 1.40026 * 120.09892 * 317.81190 * 11 10 9 13 13 C 1.37597 * 119.89785 * 179.70311 * 12 11 10 14 14 C 1.39179 * 120.10002 * 0.59539 * 13 12 11 15 15 O 1.35566 * 119.90102 * 179.69890 * 14 13 12 16 16 C 1.34784 * 117.00204 * 185.41192 * 15 14 13 17 17 H 1.08000 * 119.99762 * 5.19171 * 16 15 14 18 18 C 1.38721 * 120.00007 * 185.18958 * 16 15 14 19 19 N 1.31503 * 119.99849 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99749 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47226 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47254 * 120.00045 * 20 18 16 23 23 H 1.48500 * 109.46866 * 240.00060 * 20 18 16 24 24 C 1.39178 * 120.20192 * 359.68409 * 14 13 12 25 25 C 1.37600 * 120.10097 * 0.02562 * 24 14 13 26 26 C 1.46499 * 120.00213 * 269.99774 * 6 5 3 27 27 C 1.52999 * 117.50191 * 197.93111 * 26 6 5 28 28 C 1.53002 * 60.00077 * 252.51285 * 27 26 6 29 29 H 1.09001 * 109.47334 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47354 * 300.00004 * 1 2 3 31 31 H 1.08999 * 109.47187 * 60.00159 * 1 2 3 32 32 H 1.09006 * 109.47284 * 300.00149 * 5 3 2 33 33 H 1.09001 * 109.47121 * 59.99817 * 5 3 2 34 34 H 1.07999 * 120.00153 * 352.93396 * 9 7 6 35 35 H 1.07993 * 120.00198 * 165.82160 * 10 9 7 36 36 H 1.08001 * 120.05173 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.95020 * 180.27853 * 13 12 11 38 38 H 0.97000 * 119.99486 * 179.97438 * 19 18 16 39 39 H 1.07994 * 119.95265 * 179.97438 * 24 14 13 40 40 H 1.07999 * 120.05010 * 180.02562 * 25 24 14 41 41 H 1.09002 * 115.54753 * 343.64297 * 26 6 5 42 42 H 1.09003 * 117.50017 * 0.02562 * 27 26 6 43 43 H 1.09000 * 117.49789 * 145.01723 * 27 26 6 44 44 H 1.08995 * 117.49596 * 252.50835 * 28 27 26 45 45 H 1.08999 * 117.49714 * 107.48992 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 -0.0002 7 6 4.1723 3.3266 1.1667 8 8 4.5798 4.4735 1.1671 9 6 3.8894 2.6505 2.4324 10 6 4.2135 3.2432 3.6016 11 6 5.1171 4.4022 3.6122 12 6 6.2572 4.4111 2.7993 13 6 7.0972 5.5010 2.8079 14 6 6.8216 6.5881 3.6322 15 8 7.6552 7.6571 3.6420 16 6 7.3960 8.6270 4.5414 17 1 6.6075 8.4935 5.2673 18 6 8.1419 9.7965 4.5347 19 7 9.1024 9.9587 3.6512 20 14 7.7831 11.1403 5.7816 21 1 6.6630 10.7152 6.6590 22 1 8.9930 11.3859 6.6067 23 1 7.4075 12.3884 5.0699 24 6 5.6927 6.5811 4.4462 25 6 4.8439 5.4981 4.4397 26 6 4.1900 3.3813 -1.2692 27 6 5.0079 4.6739 -1.2359 28 6 3.4943 4.7316 -1.4523 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.9557 0.7808 0.8908 33 1 3.9563 0.7804 -0.8891 34 1 3.4214 1.6772 2.4319 35 1 3.8085 2.8657 4.5288 36 1 6.4742 3.5662 2.1626 37 1 7.9743 5.5107 2.1780 38 1 9.6237 10.7767 3.6463 39 1 5.4830 7.4266 5.0845 40 1 3.9679 5.4938 5.0713 41 1 4.2909 2.7439 -2.1477 42 1 5.3914 5.0021 -0.2698 43 1 5.6473 4.8870 -2.0925 44 1 3.1380 4.9829 -2.4513 45 1 2.8818 5.0980 -0.6285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492710611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:37 Heat of formation + Delta-G solvation = -34.616268 kcal Electronic energy + Delta-G solvation = -30003.896441 eV Core-core repulsion = 25762.734220 eV Total energy + Delta-G solvation = -4241.162221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00873 -40.04875 -38.87131 -37.14493 -36.69547 -35.85521 -34.53748 -32.90587 -32.09334 -30.14566 -29.26999 -28.10176 -26.93345 -25.51853 -24.25179 -22.16099 -22.06102 -21.68923 -21.61769 -20.37916 -18.47199 -18.05102 -17.92676 -17.52502 -17.03443 -16.72220 -16.40581 -16.05324 -15.06998 -14.81935 -14.58108 -14.34130 -14.11672 -13.89114 -13.79839 -13.61916 -13.36233 -13.31154 -13.04476 -12.79755 -12.58902 -12.48100 -12.39544 -12.18580 -11.70426 -11.43720 -11.39609 -11.14118 -11.11094 -10.99249 -10.73436 -10.69918 -10.56537 -10.40268 -10.24471 -9.47245 -9.21839 -9.03513 -8.72208 -8.50966 -7.95937 -6.89274 -6.47770 -4.02910 1.15148 1.91111 2.17601 2.39983 2.66214 2.92534 3.13177 3.14112 3.19520 3.48508 3.95957 4.09648 4.44921 4.50935 4.67189 4.71013 4.77162 4.83808 4.85444 4.95156 5.10966 5.14483 5.18146 5.19693 5.23890 5.30786 5.49159 5.58057 5.72123 5.82442 5.91233 6.03898 6.14594 6.23138 6.30795 6.38618 6.48623 6.57573 6.76283 6.86344 7.00965 7.10959 7.28100 7.35376 7.43485 7.48480 7.50912 7.89777 7.98947 8.43453 8.98041 9.69583 10.70017 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020340 B = 0.002436 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.280987 B =11490.222904 C =12094.948267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.432 3.568 4 O -0.485 6.485 5 C 0.127 3.873 6 N -0.577 5.577 7 C 0.554 3.446 8 O -0.492 6.492 9 C -0.279 4.279 10 C 0.038 3.962 11 C -0.190 4.190 12 C 0.006 3.994 13 C -0.201 4.201 14 C 0.172 3.828 15 O -0.171 6.171 16 C -0.389 4.389 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.858 5.858 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.248 4.248 25 C -0.039 4.039 26 C 0.067 3.933 27 C -0.190 4.190 28 C -0.182 4.182 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.122 0.878 42 H 0.151 0.849 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.003 -21.118 -7.079 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.271 3.729 4 O -0.370 6.370 5 C 0.001 3.999 6 N -0.309 5.309 7 C 0.347 3.653 8 O -0.368 6.368 9 C -0.300 4.300 10 C 0.019 3.981 11 C -0.191 4.191 12 C -0.012 4.012 13 C -0.220 4.220 14 C 0.116 3.884 15 O -0.073 6.073 16 C -0.465 4.465 17 H 0.112 0.888 18 C -0.166 4.166 19 N -0.492 5.492 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.268 4.268 25 C -0.058 4.058 26 C -0.037 4.037 27 C -0.227 4.227 28 C -0.220 4.220 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.124 0.876 41 H 0.140 0.860 42 H 0.168 0.832 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.622 -19.921 -7.265 24.677 hybrid contribution -0.870 0.553 0.389 1.102 sum -13.491 -19.368 -6.876 24.585 Atomic orbital electron populations 1.23250 0.76310 1.03593 1.02626 1.86497 1.23502 1.33569 1.84420 1.24736 0.93119 0.81693 0.73325 1.90731 1.66677 1.36251 1.43325 1.21001 0.86842 0.84936 1.07152 1.46993 1.67808 1.10215 1.05905 1.18460 0.76921 0.86499 0.83418 1.90787 1.43323 1.16975 1.85677 1.22590 1.12733 1.02172 0.92479 1.22352 0.88339 0.91126 0.96316 1.18282 0.98679 0.96692 1.05431 1.20465 0.92062 0.95974 0.92734 1.20002 1.03258 0.93720 1.05034 1.19548 0.88549 0.88047 0.92208 1.83920 1.45783 1.25153 1.52418 1.21444 1.19848 0.95216 1.10007 0.88831 1.25338 0.95545 0.97615 0.98098 1.70030 1.18907 1.26777 1.33472 0.85628 0.78657 0.79790 0.79268 1.19022 1.20087 1.20091 1.20968 0.98060 1.00948 1.06786 1.20758 0.96886 0.92636 0.95472 1.21621 1.07377 0.88597 0.86142 1.24125 0.94019 0.97912 1.06601 1.23163 0.96531 0.99919 1.02427 0.88095 0.91858 0.91991 0.85650 0.86104 0.86599 0.86037 0.87971 0.86726 0.91955 0.85628 0.87625 0.86015 0.83208 0.89583 0.89199 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.01 10.57 -39.25 -0.41 -3.43 16 3 C 0.43 4.32 7.92 36.00 0.29 4.61 16 4 O -0.48 -6.78 16.18 -18.75 -0.30 -7.08 16 5 C 0.13 1.01 5.65 -5.20 -0.03 0.98 16 6 N -0.58 -6.95 2.33 -169.16 -0.39 -7.34 16 7 C 0.55 8.34 6.33 -13.04 -0.08 8.25 16 8 O -0.49 -9.19 8.28 5.17 0.04 -9.15 16 9 C -0.28 -3.63 8.94 -37.50 -0.34 -3.97 16 10 C 0.04 0.54 9.80 -37.19 -0.36 0.17 16 11 C -0.19 -3.44 4.51 -105.02 -0.47 -3.92 16 12 C 0.01 0.12 6.71 -39.15 -0.26 -0.14 16 13 C -0.20 -4.47 9.97 -39.47 -0.39 -4.87 16 14 C 0.17 4.30 6.66 -38.88 -0.26 4.04 16 15 O -0.17 -4.96 9.74 0.75 0.01 -4.96 16 16 C -0.39 -11.00 9.44 30.91 0.29 -10.71 16 17 H 0.09 2.46 5.26 -52.49 -0.28 2.18 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -25.30 13.67 55.48 0.76 -24.54 16 20 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 C -0.25 -5.62 9.11 -39.47 -0.36 -5.98 16 25 C -0.04 -0.76 9.78 -39.15 -0.38 -1.14 16 26 C 0.07 0.80 6.62 -67.93 -0.45 0.35 16 27 C -0.19 -2.70 9.64 -26.73 -0.26 -2.96 16 28 C -0.18 -2.53 9.89 -26.73 -0.26 -2.80 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 32 H 0.13 0.74 6.37 -51.93 -0.33 0.41 16 33 H 0.12 0.58 8.03 -51.93 -0.42 0.16 16 34 H 0.12 1.14 6.37 -52.49 -0.33 0.81 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.10 1.76 7.05 -52.49 -0.37 1.39 16 37 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.13 2.84 5.68 -52.49 -0.30 2.54 16 40 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.12 1.08 8.09 -51.93 -0.42 0.66 16 42 H 0.15 2.69 5.01 -53.12 -0.27 2.43 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.10 1.64 7.76 -51.93 -0.40 1.24 16 LS Contribution 381.45 15.07 5.75 5.75 Total: -1.00 -35.29 381.45 -7.58 -42.87 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.63 Total: 8.01 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -2.37 Total: -15.80 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.36 Total: -31.89 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.67 Total: -24.61 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.29 -7.58 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492710611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.254 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds