Wall clock time and date at job start Wed Apr 1 2020 03:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00099 * 2 1 4 4 O 1.20825 * 120.00052 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99893 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47036 * 179.97438 * 5 3 2 7 7 C 1.34775 * 120.00010 * 90.00288 * 6 5 3 8 8 O 1.21720 * 119.99975 * 176.43412 * 7 6 5 9 9 C 1.46256 * 120.00016 * 356.42910 * 7 6 5 10 10 C 1.35023 * 120.00319 * 172.93269 * 9 7 6 11 11 C 1.46967 * 119.99613 * 345.82871 * 10 9 7 12 12 C 1.40026 * 120.09892 * 317.81190 * 11 10 9 13 13 C 1.37597 * 119.89785 * 179.70311 * 12 11 10 14 14 C 1.39179 * 120.10002 * 0.59539 * 13 12 11 15 15 O 1.35566 * 119.90102 * 179.69890 * 14 13 12 16 16 C 1.34784 * 117.00204 * 185.41192 * 15 14 13 17 17 H 1.08000 * 119.99762 * 5.19171 * 16 15 14 18 18 C 1.38721 * 120.00007 * 185.18958 * 16 15 14 19 19 N 1.31503 * 119.99849 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99749 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47226 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47254 * 120.00045 * 20 18 16 23 23 H 1.48500 * 109.46866 * 240.00060 * 20 18 16 24 24 C 1.39178 * 120.20192 * 359.68409 * 14 13 12 25 25 C 1.37600 * 120.10097 * 0.02562 * 24 14 13 26 26 C 1.46499 * 120.00213 * 269.99774 * 6 5 3 27 27 C 1.52999 * 117.50191 * 197.93111 * 26 6 5 28 28 C 1.53002 * 60.00077 * 252.51285 * 27 26 6 29 29 H 1.09001 * 109.47334 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47354 * 300.00004 * 1 2 3 31 31 H 1.08999 * 109.47187 * 60.00159 * 1 2 3 32 32 H 1.09006 * 109.47284 * 300.00149 * 5 3 2 33 33 H 1.09001 * 109.47121 * 59.99817 * 5 3 2 34 34 H 1.07999 * 120.00153 * 352.93396 * 9 7 6 35 35 H 1.07993 * 120.00198 * 165.82160 * 10 9 7 36 36 H 1.08001 * 120.05173 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.95020 * 180.27853 * 13 12 11 38 38 H 0.97000 * 119.99486 * 179.97438 * 19 18 16 39 39 H 1.07994 * 119.95265 * 179.97438 * 24 14 13 40 40 H 1.07999 * 120.05010 * 180.02562 * 25 24 14 41 41 H 1.09002 * 115.54753 * 343.64297 * 26 6 5 42 42 H 1.09003 * 117.50017 * 0.02562 * 27 26 6 43 43 H 1.09000 * 117.49789 * 145.01723 * 27 26 6 44 44 H 1.08995 * 117.49596 * 252.50835 * 28 27 26 45 45 H 1.08999 * 117.49714 * 107.48992 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 -0.0002 7 6 4.1723 3.3266 1.1667 8 8 4.5798 4.4735 1.1671 9 6 3.8894 2.6505 2.4324 10 6 4.2135 3.2432 3.6016 11 6 5.1171 4.4022 3.6122 12 6 6.2572 4.4111 2.7993 13 6 7.0972 5.5010 2.8079 14 6 6.8216 6.5881 3.6322 15 8 7.6552 7.6571 3.6420 16 6 7.3960 8.6270 4.5414 17 1 6.6075 8.4935 5.2673 18 6 8.1419 9.7965 4.5347 19 7 9.1024 9.9587 3.6512 20 14 7.7831 11.1403 5.7816 21 1 6.6630 10.7152 6.6590 22 1 8.9930 11.3859 6.6067 23 1 7.4075 12.3884 5.0699 24 6 5.6927 6.5811 4.4462 25 6 4.8439 5.4981 4.4397 26 6 4.1900 3.3813 -1.2692 27 6 5.0079 4.6739 -1.2359 28 6 3.4943 4.7316 -1.4523 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.9557 0.7808 0.8908 33 1 3.9563 0.7804 -0.8891 34 1 3.4214 1.6772 2.4319 35 1 3.8085 2.8657 4.5288 36 1 6.4742 3.5662 2.1626 37 1 7.9743 5.5107 2.1780 38 1 9.6237 10.7767 3.6463 39 1 5.4830 7.4266 5.0845 40 1 3.9679 5.4938 5.0713 41 1 4.2909 2.7439 -2.1477 42 1 5.3914 5.0021 -0.2698 43 1 5.6473 4.8870 -2.0925 44 1 3.1380 4.9829 -2.4513 45 1 2.8818 5.0980 -0.6285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492710611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:36 Heat of formation + Delta-G solvation = -56.781659 kcal Electronic energy + Delta-G solvation = -30004.857605 eV Core-core repulsion = 25762.734220 eV Total energy + Delta-G solvation = -4242.123385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.92663 -41.08281 -40.56365 -38.58741 -37.56810 -37.17825 -35.54271 -34.53083 -33.78204 -31.83359 -30.05334 -29.58264 -27.59035 -27.43980 -25.51130 -23.65637 -23.28188 -23.13201 -22.43312 -21.69538 -19.94796 -19.50591 -18.80408 -18.76002 -18.37174 -17.75855 -17.21442 -16.96825 -16.46632 -16.37154 -16.15694 -15.81830 -15.53669 -15.39354 -14.83070 -14.75019 -14.60569 -14.42673 -14.33076 -14.16333 -13.94946 -13.74500 -13.56021 -13.20951 -12.99826 -12.94586 -12.67264 -12.56086 -12.29446 -12.23569 -12.18358 -12.09702 -11.76031 -11.56270 -11.28480 -11.25933 -10.92218 -10.41398 -10.26949 -9.70770 -9.45741 -8.57605 -8.49960 -6.16243 -0.09925 0.70777 1.07126 1.18905 1.32986 1.42744 1.47748 1.52028 2.08096 2.16075 2.34499 2.85793 3.06400 3.21695 3.49439 3.56983 3.83673 3.91398 3.99863 4.02595 4.10532 4.11862 4.16586 4.20694 4.34794 4.36421 4.37913 4.50337 4.54562 4.58102 4.74968 4.76274 4.81548 5.02904 5.05139 5.10726 5.19180 5.22601 5.34372 5.40044 5.43487 5.64888 5.71665 5.74680 5.80798 6.01514 6.23021 6.32016 6.76968 6.94616 7.29997 7.76488 8.73728 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020340 B = 0.002436 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.280987 B =11490.222904 C =12094.948267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.437 3.563 4 O -0.533 6.533 5 C 0.120 3.880 6 N -0.575 5.575 7 C 0.536 3.464 8 O -0.538 6.538 9 C -0.247 4.247 10 C 0.019 3.981 11 C -0.161 4.161 12 C 0.013 3.987 13 C -0.215 4.215 14 C 0.129 3.871 15 O -0.229 6.229 16 C -0.413 4.413 17 H 0.101 0.899 18 C -0.024 4.024 19 N -0.919 5.919 20 Si 1.021 2.979 21 H -0.251 1.251 22 H -0.265 1.265 23 H -0.269 1.269 24 C -0.258 4.258 25 C -0.048 4.048 26 C 0.089 3.911 27 C -0.207 4.207 28 C -0.192 4.192 29 H 0.133 0.867 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.168 0.832 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.273 0.727 39 H 0.118 0.882 40 H 0.143 0.857 41 H 0.167 0.833 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.852 -25.763 -7.081 31.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.279 3.721 4 O -0.421 6.421 5 C -0.004 4.004 6 N -0.305 5.305 7 C 0.330 3.670 8 O -0.417 6.417 9 C -0.268 4.268 10 C 0.000 4.000 11 C -0.162 4.162 12 C -0.005 4.005 13 C -0.234 4.234 14 C 0.078 3.922 15 O -0.135 6.135 16 C -0.489 4.489 17 H 0.119 0.881 18 C -0.222 4.222 19 N -0.557 5.557 20 Si 0.840 3.160 21 H -0.175 1.175 22 H -0.190 1.190 23 H -0.194 1.194 24 C -0.277 4.277 25 C -0.066 4.066 26 C -0.015 4.015 27 C -0.244 4.244 28 C -0.231 4.231 29 H 0.151 0.849 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.174 0.826 33 H 0.182 0.818 34 H 0.179 0.821 35 H 0.185 0.815 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.135 0.865 40 H 0.161 0.839 41 H 0.184 0.816 42 H 0.129 0.871 43 H 0.120 0.880 44 H 0.128 0.872 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.523 -24.690 -7.281 30.059 hybrid contribution -0.320 1.465 0.162 1.508 sum -15.842 -23.224 -7.119 29.001 Atomic orbital electron populations 1.23483 0.75245 1.05550 1.02078 1.86497 1.24498 1.32472 1.83776 1.25054 0.93758 0.81378 0.71904 1.90745 1.67805 1.37800 1.45753 1.21513 0.85604 0.82493 1.10790 1.47057 1.66523 1.11879 1.05041 1.19057 0.76578 0.86284 0.85112 1.90833 1.45212 1.19090 1.86603 1.23025 1.10039 1.02810 0.90903 1.22586 0.88788 0.89762 0.98875 1.18825 0.98002 0.97279 1.02059 1.20701 0.91716 0.95402 0.92728 1.20190 1.03896 0.94446 1.04912 1.20042 0.89810 0.88121 0.94263 1.83885 1.48337 1.26875 1.54400 1.21891 1.20495 0.95808 1.10746 0.88130 1.26657 0.95087 0.99985 1.00428 1.70176 1.21060 1.27980 1.36475 0.84502 0.79117 0.75911 0.76476 1.17469 1.18960 1.19395 1.21077 0.98139 1.02056 1.06448 1.21161 0.97353 0.91703 0.96351 1.21941 1.03816 0.88272 0.87458 1.23916 0.94344 1.00897 1.05261 1.23074 0.95664 1.02379 1.01998 0.84903 0.92505 0.92553 0.82638 0.81846 0.82105 0.81491 0.85681 0.87680 0.91745 0.86466 0.83903 0.81553 0.87069 0.88036 0.87207 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.47 16 2 O -0.36 -4.27 10.57 -51.40 -0.54 -4.81 16 3 C 0.44 6.80 7.92 71.23 0.56 7.37 16 4 O -0.53 -13.41 16.18 21.97 0.36 -13.05 16 5 C 0.12 1.21 5.65 85.63 0.48 1.70 16 6 N -0.57 -11.69 2.33 -807.32 -1.88 -13.58 16 7 C 0.54 14.65 6.33 86.33 0.55 15.20 16 8 O -0.54 -19.98 8.28 -4.41 -0.04 -20.02 16 9 C -0.25 -5.19 8.94 23.62 0.21 -4.97 16 10 C 0.02 0.44 9.80 23.82 0.23 0.68 16 11 C -0.16 -5.53 4.51 -20.13 -0.09 -5.62 16 12 C 0.01 0.49 6.71 22.55 0.15 0.64 16 13 C -0.22 -10.21 9.97 22.34 0.22 -9.99 16 14 C 0.13 6.95 6.66 22.72 0.15 7.10 16 15 O -0.23 -14.60 9.74 -20.25 -0.20 -14.79 16 16 C -0.41 -25.21 9.44 67.94 0.64 -24.57 16 17 H 0.10 5.67 5.26 -2.91 -0.02 5.65 16 18 C -0.02 -1.42 5.49 84.86 0.47 -0.95 16 19 N -0.92 -58.27 13.67 21.62 0.30 -57.97 16 20 Si 1.02 44.45 29.55 68.60 2.03 46.47 16 21 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 C -0.26 -12.22 9.11 22.34 0.20 -12.02 16 25 C -0.05 -1.80 9.78 22.55 0.22 -1.58 16 26 C 0.09 1.88 6.62 44.99 0.30 2.18 16 27 C -0.21 -5.87 9.64 30.59 0.29 -5.58 16 28 C -0.19 -5.29 9.89 30.60 0.30 -4.99 16 29 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 31 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 32 H 0.16 0.70 6.37 -2.38 -0.02 0.69 16 33 H 0.16 0.39 8.03 -2.39 -0.02 0.37 16 34 H 0.16 1.99 6.37 -2.91 -0.02 1.97 16 35 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.13 4.14 7.05 -2.91 -0.02 4.12 16 37 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 38 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 39 H 0.12 5.62 5.68 -2.91 -0.02 5.60 16 40 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 41 H 0.17 2.06 8.09 -2.39 -0.02 2.04 16 42 H 0.11 4.20 5.01 -21.22 -0.11 4.10 16 43 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.06 2.04 7.76 -2.39 -0.02 2.02 16 Total: -1.00 -89.15 381.45 7.05 -82.10 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.93 Total: 29.59 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 6.10 Total: -33.94 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -1.59 Total: -71.55 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.42 Total: -52.68 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -89.15 7.05 -82.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492710611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.318 kcal (2) G-P(sol) polarization free energy of solvation -89.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds