Wall clock time and date at job start Wed Apr 1 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.36848 * 2 1 4 4 C 1.54006 * 110.33056 * 237.80855 * 2 1 3 5 5 N 1.47480 * 107.08260 * 242.41183 * 4 2 1 6 6 C 1.34778 * 127.03088 * 154.51575 * 5 4 2 7 7 O 1.21719 * 120.00056 * 0.02562 * 6 5 4 8 8 C 1.46255 * 120.00075 * 180.02562 * 6 5 4 9 9 C 1.35020 * 120.00169 * 179.97438 * 8 6 5 10 10 C 1.46965 * 120.00181 * 179.97438 * 9 8 6 11 11 C 1.40022 * 120.09761 * 359.44357 * 10 9 8 12 12 C 1.37595 * 119.89318 * 179.78826 * 11 10 9 13 13 C 1.39177 * 120.10293 * 0.49432 * 12 11 10 14 14 O 1.35573 * 119.89794 * 179.71972 * 13 12 11 15 15 C 1.34777 * 117.00088 * 174.46604 * 14 13 12 16 16 H 1.08001 * 120.00025 * 5.06086 * 15 14 13 17 17 C 1.38719 * 120.00470 * 185.05439 * 15 14 13 18 18 N 1.31512 * 119.99315 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00458 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47179 * 90.00015 * 19 17 15 21 21 H 1.48498 * 109.47159 * 210.00458 * 19 17 15 22 22 H 1.48502 * 109.46656 * 330.00256 * 19 17 15 23 23 C 1.39169 * 120.20393 * 359.73808 * 13 12 11 24 24 C 1.37598 * 120.10116 * 0.02637 * 23 13 12 25 25 C 1.48121 * 105.93704 * 334.77975 * 5 4 2 26 26 C 1.54593 * 103.41891 * 39.02404 * 25 5 4 27 27 H 1.08996 * 110.73706 * 81.24713 * 26 25 5 28 28 C 1.50701 * 110.83162 * 204.45041 * 26 25 5 29 29 O 1.20828 * 120.00432 * 113.56126 * 28 26 25 30 30 O 1.34236 * 119.99509 * 293.56050 * 28 26 25 31 31 H 1.09009 * 109.47269 * 180.73645 * 1 2 3 32 32 H 1.08997 * 109.47710 * 300.73800 * 1 2 3 33 33 H 1.09003 * 109.47244 * 60.74007 * 1 2 3 34 34 H 1.08998 * 109.90983 * 123.05620 * 4 2 1 35 35 H 1.08990 * 110.07000 * 1.86317 * 4 2 1 36 36 H 1.07997 * 120.00007 * 359.97438 * 8 6 5 37 37 H 1.08004 * 120.00107 * 359.72548 * 9 8 6 38 38 H 1.08004 * 120.05132 * 0.02562 * 11 10 9 39 39 H 1.08003 * 119.94734 * 180.23288 * 12 11 10 40 40 H 0.97004 * 119.99533 * 179.97438 * 18 17 15 41 41 H 1.07997 * 119.95387 * 179.97438 * 23 13 12 42 42 H 1.08001 * 120.05398 * 179.97438 * 24 23 13 43 43 H 1.08998 * 110.66234 * 157.50529 * 25 5 4 44 44 H 1.08998 * 110.65519 * 280.62502 * 25 5 4 45 45 H 0.96698 * 116.99816 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0650 -0.7694 -1.2221 5 7 2.8277 -1.9223 -0.7083 6 6 3.0614 -3.0885 -1.3422 7 8 2.6223 -3.2708 -2.4628 8 6 3.8426 -4.1351 -0.6838 9 6 4.0763 -5.3036 -1.3186 10 6 4.8617 -6.3550 -0.6572 11 6 5.3786 -6.1427 0.6267 12 6 6.1097 -7.1316 1.2438 13 6 6.3444 -8.3374 0.5897 14 8 7.0701 -9.3068 1.1993 15 6 7.1654 -10.4912 0.5633 16 1 6.7453 -10.6090 -0.4246 17 6 7.8032 -11.5591 1.1775 18 7 8.3145 -11.4157 2.3807 19 14 7.9359 -13.2005 0.2957 20 1 9.1875 -13.2337 -0.5027 21 1 7.9568 -14.2989 1.2948 22 1 6.7688 -13.3736 -0.6060 23 6 5.8368 -8.5511 -0.6884 24 6 5.1005 -7.5697 -1.3114 25 6 3.2789 -1.5390 0.6495 26 6 2.0670 -0.7724 1.2271 27 1 1.3162 -1.4660 1.6055 28 6 2.5027 0.1817 2.3092 29 8 2.4033 1.3739 2.1397 30 8 3.0013 -0.2931 3.4616 31 1 -0.3634 -1.0277 0.0132 32 1 -0.3634 0.5252 0.8832 33 1 -0.3634 0.5023 -0.8966 34 1 2.7181 -0.1244 -1.8099 35 1 1.2355 -1.1174 -1.8375 36 1 4.2325 -3.9732 0.3103 37 1 3.6826 -5.4672 -2.3110 38 1 5.2004 -5.2056 1.1334 39 1 6.5055 -6.9702 2.2356 40 1 8.7602 -12.1625 2.8103 41 1 6.0218 -9.4881 -1.1924 42 1 4.7073 -7.7362 -2.3034 43 1 3.4935 -2.4245 1.2477 44 1 4.1522 -0.8891 0.5952 45 1 3.2669 0.3574 4.1260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493412266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:00 Heat of formation + Delta-G solvation = -110.605880 kcal Electronic energy + Delta-G solvation = -28435.280202 eV Core-core repulsion = 24190.822824 eV Total energy + Delta-G solvation = -4244.457378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18795 -39.81344 -39.19219 -37.84236 -36.87416 -36.51242 -33.40233 -33.03730 -32.29268 -30.76530 -30.45623 -28.57527 -26.80883 -25.64900 -25.11035 -23.23741 -22.41030 -22.02752 -20.57962 -19.99553 -18.89383 -18.56929 -18.11971 -17.56210 -17.33002 -16.96632 -16.32209 -15.71423 -15.22979 -14.86770 -14.74419 -14.49999 -14.42517 -13.98020 -13.86325 -13.85899 -13.66057 -13.47701 -13.19709 -13.03613 -12.67324 -12.62289 -12.46087 -12.01914 -11.92968 -11.79461 -11.75396 -11.53844 -11.44549 -11.16603 -11.14496 -11.10197 -11.02435 -10.69860 -10.55711 -9.86267 -9.64284 -9.51804 -8.98151 -8.84183 -8.40735 -7.14414 -6.67432 -4.22098 1.01855 1.68538 2.11352 2.41285 2.51066 2.91437 3.02371 3.03370 3.08291 3.48681 3.78545 3.80428 4.04106 4.36039 4.48575 4.66776 4.73885 4.78251 4.89613 4.90468 4.98672 5.03540 5.13617 5.26569 5.27874 5.35483 5.40595 5.50023 5.54895 5.58212 5.63607 5.64265 5.80212 5.96100 6.01265 6.05073 6.08962 6.43602 6.47862 6.58055 6.76399 6.89448 7.10433 7.21001 7.25071 7.38975 7.42351 7.61378 7.77931 8.20054 8.77333 9.44059 10.49077 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.001830 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.418925 B =15292.781505 C =16504.503670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.105 0.895 4 C 0.109 3.891 5 N -0.624 5.624 6 C 0.579 3.421 7 O -0.553 6.553 8 C -0.284 4.284 9 C 0.043 3.957 10 C -0.200 4.200 11 C -0.042 4.042 12 C -0.199 4.199 13 C 0.167 3.833 14 O -0.161 6.161 15 C -0.393 4.393 16 H 0.098 0.902 17 C 0.041 3.959 18 N -0.851 5.851 19 Si 0.945 3.055 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.265 1.265 23 C -0.242 4.242 24 C -0.034 4.034 25 C 0.117 3.883 26 C -0.099 4.099 27 H 0.124 0.876 28 C 0.492 3.508 29 O -0.510 6.510 30 O -0.511 6.511 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.274 0.726 41 H 0.131 0.869 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.322 19.697 -0.658 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.123 0.877 4 C -0.014 4.014 5 N -0.358 5.358 6 C 0.374 3.626 7 O -0.433 6.433 8 C -0.305 4.305 9 C 0.023 3.977 10 C -0.201 4.201 11 C -0.060 4.060 12 C -0.219 4.219 13 C 0.111 3.889 14 O -0.062 6.062 15 C -0.468 4.468 16 H 0.115 0.885 17 C -0.165 4.165 18 N -0.484 5.484 19 Si 0.769 3.231 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.189 1.189 23 C -0.262 4.262 24 C -0.052 4.052 25 C -0.007 4.007 26 C -0.119 4.119 27 H 0.142 0.858 28 C 0.334 3.666 29 O -0.398 6.398 30 O -0.323 6.323 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.149 0.851 42 H 0.132 0.868 43 H 0.118 0.882 44 H 0.096 0.904 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -11.396 19.353 -1.248 22.494 hybrid contribution 0.289 -0.283 0.203 0.453 sum -11.107 19.069 -1.045 22.093 Atomic orbital electron populations 1.21859 0.93257 1.02431 1.02596 1.22169 0.97257 1.00462 0.91567 0.87711 1.22101 0.96441 0.87049 0.95765 1.48564 1.54986 1.15309 1.16988 1.18075 0.79436 0.80257 0.84855 1.90794 1.53231 1.79816 1.19415 1.22379 1.09930 0.95591 1.02581 1.22303 0.87832 0.90443 0.97128 1.18444 1.09097 0.95727 0.96865 1.20868 0.94572 0.97179 0.93394 1.20149 1.07071 0.93245 1.01386 1.19616 0.88723 0.89574 0.91029 1.83901 1.57404 1.19998 1.44920 1.21479 1.38556 0.85298 1.01497 0.88512 1.25405 0.95726 0.99420 0.95948 1.70016 1.32865 1.32701 1.12794 0.85641 0.79317 0.79396 0.78749 1.19624 1.20037 1.18931 1.21100 1.06661 1.01586 0.96812 1.20991 0.94520 0.91819 0.97880 1.22282 0.94646 0.99939 0.83791 1.22212 1.00482 0.96958 0.92209 0.85844 1.23019 0.73213 0.88305 0.82078 1.90727 1.51361 1.17754 1.79952 1.84556 1.74824 1.45696 1.27176 0.92062 0.92143 0.91604 0.91301 0.89838 0.85798 0.85892 0.86463 0.86102 0.91573 0.85107 0.86787 0.88151 0.90362 0.72771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.89 37.15 0.33 -0.56 16 2 C -0.10 -0.68 3.00 -89.25 -0.27 -0.95 16 3 H 0.10 0.80 6.85 -51.93 -0.36 0.45 16 4 C 0.11 0.98 6.62 -2.98 -0.02 0.96 16 5 N -0.62 -6.67 3.29 -171.68 -0.57 -7.23 16 6 C 0.58 8.11 7.81 -13.04 -0.10 8.01 16 7 O -0.55 -9.61 16.57 5.17 0.09 -9.52 16 8 C -0.28 -3.80 8.91 -37.51 -0.33 -4.13 16 9 C 0.04 0.63 9.45 -37.19 -0.35 0.28 16 10 C -0.20 -3.32 5.87 -105.02 -0.62 -3.94 16 11 C -0.04 -0.69 9.40 -39.15 -0.37 -1.06 16 12 C -0.20 -3.89 9.97 -39.47 -0.39 -4.28 16 13 C 0.17 3.77 6.66 -38.89 -0.26 3.51 16 14 O -0.16 -4.32 9.74 0.74 0.01 -4.31 16 15 C -0.39 -10.31 9.48 30.91 0.29 -10.01 16 16 H 0.10 2.33 5.18 -52.49 -0.27 2.06 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.85 -23.58 13.67 55.48 0.76 -22.82 16 19 Si 0.95 19.32 29.55 -169.99 -5.02 14.29 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 23 C -0.24 -4.92 9.14 -39.47 -0.36 -5.28 16 24 C -0.03 -0.59 9.78 -39.15 -0.38 -0.97 16 25 C 0.12 0.92 6.31 -2.31 -0.01 0.90 16 26 C -0.10 -0.68 3.10 -90.08 -0.28 -0.96 16 27 H 0.12 0.75 7.86 -51.93 -0.41 0.34 16 28 C 0.49 3.65 7.63 36.01 0.27 3.92 16 29 O -0.51 -5.14 16.20 -18.75 -0.30 -5.44 16 30 O -0.51 -2.85 13.42 -39.27 -0.53 -3.37 16 31 H 0.06 0.39 8.13 -51.92 -0.42 -0.03 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.81 7.60 -51.93 -0.39 0.42 16 36 H 0.12 1.42 4.67 -52.49 -0.24 1.17 16 37 H 0.12 1.81 7.52 -52.48 -0.39 1.42 16 38 H 0.12 1.56 6.16 -52.48 -0.32 1.24 16 39 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.13 2.63 5.62 -52.49 -0.29 2.34 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 43 H 0.10 0.71 6.65 -51.93 -0.35 0.37 16 44 H 0.08 0.56 8.04 -51.93 -0.42 0.15 16 45 H 0.41 0.68 9.10 45.56 0.41 1.10 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -32.99 383.53 -7.44 -40.43 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.71 Total: 5.79 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -2.95 Total: -13.59 kcal Atomic # 7 Polarization: -30.24 SS G_CDS: 0.19 Total: -30.05 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.74 Total: -22.66 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.99 -7.44 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493412266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.174 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds