Wall clock time and date at job start Wed Apr 1 2020 03:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.36848 * 2 1 4 4 C 1.54006 * 110.33056 * 237.80855 * 2 1 3 5 5 N 1.47480 * 107.08260 * 242.41183 * 4 2 1 6 6 C 1.34778 * 127.03088 * 154.51575 * 5 4 2 7 7 O 1.21719 * 120.00056 * 0.02562 * 6 5 4 8 8 C 1.46255 * 120.00075 * 180.02562 * 6 5 4 9 9 C 1.35020 * 120.00169 * 179.97438 * 8 6 5 10 10 C 1.46965 * 120.00181 * 179.97438 * 9 8 6 11 11 C 1.40022 * 120.09761 * 359.44357 * 10 9 8 12 12 C 1.37595 * 119.89318 * 179.78826 * 11 10 9 13 13 C 1.39177 * 120.10293 * 0.49432 * 12 11 10 14 14 O 1.35573 * 119.89794 * 179.71972 * 13 12 11 15 15 C 1.34777 * 117.00088 * 174.46604 * 14 13 12 16 16 H 1.08001 * 120.00025 * 5.06086 * 15 14 13 17 17 C 1.38719 * 120.00470 * 185.05439 * 15 14 13 18 18 N 1.31512 * 119.99315 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00458 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47179 * 90.00015 * 19 17 15 21 21 H 1.48498 * 109.47159 * 210.00458 * 19 17 15 22 22 H 1.48502 * 109.46656 * 330.00256 * 19 17 15 23 23 C 1.39169 * 120.20393 * 359.73808 * 13 12 11 24 24 C 1.37598 * 120.10116 * 0.02637 * 23 13 12 25 25 C 1.48121 * 105.93704 * 334.77975 * 5 4 2 26 26 C 1.54593 * 103.41891 * 39.02404 * 25 5 4 27 27 H 1.08996 * 110.73706 * 81.24713 * 26 25 5 28 28 C 1.50701 * 110.83162 * 204.45041 * 26 25 5 29 29 O 1.20828 * 120.00432 * 113.56126 * 28 26 25 30 30 O 1.34236 * 119.99509 * 293.56050 * 28 26 25 31 31 H 1.09009 * 109.47269 * 180.73645 * 1 2 3 32 32 H 1.08997 * 109.47710 * 300.73800 * 1 2 3 33 33 H 1.09003 * 109.47244 * 60.74007 * 1 2 3 34 34 H 1.08998 * 109.90983 * 123.05620 * 4 2 1 35 35 H 1.08990 * 110.07000 * 1.86317 * 4 2 1 36 36 H 1.07997 * 120.00007 * 359.97438 * 8 6 5 37 37 H 1.08004 * 120.00107 * 359.72548 * 9 8 6 38 38 H 1.08004 * 120.05132 * 0.02562 * 11 10 9 39 39 H 1.08003 * 119.94734 * 180.23288 * 12 11 10 40 40 H 0.97004 * 119.99533 * 179.97438 * 18 17 15 41 41 H 1.07997 * 119.95387 * 179.97438 * 23 13 12 42 42 H 1.08001 * 120.05398 * 179.97438 * 24 23 13 43 43 H 1.08998 * 110.66234 * 157.50529 * 25 5 4 44 44 H 1.08998 * 110.65519 * 280.62502 * 25 5 4 45 45 H 0.96698 * 116.99816 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0650 -0.7694 -1.2221 5 7 2.8277 -1.9223 -0.7083 6 6 3.0614 -3.0885 -1.3422 7 8 2.6223 -3.2708 -2.4628 8 6 3.8426 -4.1351 -0.6838 9 6 4.0763 -5.3036 -1.3186 10 6 4.8617 -6.3550 -0.6572 11 6 5.3786 -6.1427 0.6267 12 6 6.1097 -7.1316 1.2438 13 6 6.3444 -8.3374 0.5897 14 8 7.0701 -9.3068 1.1993 15 6 7.1654 -10.4912 0.5633 16 1 6.7453 -10.6090 -0.4246 17 6 7.8032 -11.5591 1.1775 18 7 8.3145 -11.4157 2.3807 19 14 7.9359 -13.2005 0.2957 20 1 9.1875 -13.2337 -0.5027 21 1 7.9568 -14.2989 1.2948 22 1 6.7688 -13.3736 -0.6060 23 6 5.8368 -8.5511 -0.6884 24 6 5.1005 -7.5697 -1.3114 25 6 3.2789 -1.5390 0.6495 26 6 2.0670 -0.7724 1.2271 27 1 1.3162 -1.4660 1.6055 28 6 2.5027 0.1817 2.3092 29 8 2.4033 1.3739 2.1397 30 8 3.0013 -0.2931 3.4616 31 1 -0.3634 -1.0277 0.0132 32 1 -0.3634 0.5252 0.8832 33 1 -0.3634 0.5023 -0.8966 34 1 2.7181 -0.1244 -1.8099 35 1 1.2355 -1.1174 -1.8375 36 1 4.2325 -3.9732 0.3103 37 1 3.6826 -5.4672 -2.3110 38 1 5.2004 -5.2056 1.1334 39 1 6.5055 -6.9702 2.2356 40 1 8.7602 -12.1625 2.8103 41 1 6.0218 -9.4881 -1.1924 42 1 4.7073 -7.7362 -2.3034 43 1 3.4935 -2.4245 1.2477 44 1 4.1522 -0.8891 0.5952 45 1 3.2669 0.3574 4.1260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493412266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:59 Heat of formation + Delta-G solvation = -131.566923 kcal Electronic energy + Delta-G solvation = -28436.189141 eV Core-core repulsion = 24190.822824 eV Total energy + Delta-G solvation = -4245.366317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.84029 -40.88826 -40.59996 -38.80436 -38.34312 -37.08162 -34.76279 -34.15321 -33.75977 -31.95194 -31.40440 -29.90238 -27.83956 -27.26808 -25.83558 -24.40842 -23.66745 -22.99295 -21.76120 -20.70723 -20.23620 -19.48509 -19.10859 -18.80680 -18.49930 -17.96203 -17.12033 -16.62080 -16.46628 -16.19286 -16.05258 -15.94470 -15.59848 -15.15966 -15.10180 -14.74509 -14.60499 -14.46740 -14.23523 -14.12751 -13.93168 -13.58529 -13.34052 -13.29856 -13.23185 -12.96117 -12.70217 -12.56293 -12.55281 -12.21549 -12.12885 -12.12247 -12.02818 -11.73354 -11.66399 -11.20254 -11.11001 -10.99577 -10.57501 -9.87513 -9.82664 -8.67144 -8.51434 -6.17271 -0.25735 0.60451 1.09533 1.14911 1.36580 1.46283 1.53498 1.77203 2.15880 2.18921 2.32658 2.87039 3.17725 3.19029 3.38373 3.43810 3.71398 3.82130 3.95145 4.07908 4.09676 4.14607 4.25926 4.30074 4.42163 4.48302 4.49148 4.57963 4.65707 4.69715 4.73480 4.81442 4.95272 4.96639 4.99696 5.04269 5.18847 5.21082 5.31511 5.34347 5.39918 5.60614 5.61627 5.65547 5.81684 5.98424 6.11836 6.42632 6.93096 6.98228 7.12110 7.70345 8.70508 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.001830 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.418925 B =15292.781505 C =16504.503670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 H 0.101 0.899 4 C 0.106 3.894 5 N -0.619 5.619 6 C 0.572 3.428 7 O -0.590 6.590 8 C -0.246 4.246 9 C 0.022 3.978 10 C -0.171 4.171 11 C -0.036 4.036 12 C -0.206 4.206 13 C 0.130 3.870 14 O -0.219 6.219 15 C -0.416 4.416 16 H 0.106 0.894 17 C -0.019 4.019 18 N -0.913 5.913 19 Si 1.018 2.982 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.250 4.250 24 C -0.039 4.039 25 C 0.112 3.888 26 C -0.095 4.095 27 H 0.136 0.864 28 C 0.501 3.499 29 O -0.540 6.540 30 O -0.508 6.508 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.152 0.848 37 H 0.125 0.875 38 H 0.161 0.839 39 H 0.124 0.876 40 H 0.275 0.725 41 H 0.124 0.876 42 H 0.144 0.856 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.104 22.231 -1.248 25.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.120 0.880 4 C -0.016 4.016 5 N -0.351 5.351 6 C 0.366 3.634 7 O -0.473 6.473 8 C -0.267 4.267 9 C 0.002 3.998 10 C -0.172 4.172 11 C -0.053 4.053 12 C -0.225 4.225 13 C 0.078 3.922 14 O -0.124 6.124 15 C -0.491 4.491 16 H 0.123 0.877 17 C -0.218 4.218 18 N -0.550 5.550 19 Si 0.837 3.163 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.176 1.176 23 C -0.269 4.269 24 C -0.057 4.057 25 C -0.011 4.011 26 C -0.115 4.115 27 H 0.154 0.846 28 C 0.344 3.656 29 O -0.430 6.430 30 O -0.321 6.321 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.169 0.831 37 H 0.143 0.857 38 H 0.178 0.822 39 H 0.142 0.858 40 H 0.084 0.916 41 H 0.142 0.858 42 H 0.162 0.838 43 H 0.134 0.866 44 H 0.108 0.892 45 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -13.211 21.973 -1.828 25.704 hybrid contribution 0.524 -0.428 0.280 0.733 sum -12.687 21.545 -1.547 25.051 Atomic orbital electron populations 1.21843 0.92519 1.02502 1.03052 1.22079 0.97782 0.99918 0.90871 0.88043 1.22227 0.96176 0.86595 0.96632 1.48571 1.53962 1.14609 1.17981 1.18171 0.79473 0.81225 0.84536 1.90791 1.54691 1.80733 1.21118 1.22689 1.06738 0.94295 1.02942 1.22184 0.89274 0.90659 0.97719 1.18756 1.06628 0.95421 0.96397 1.21278 0.92889 0.97880 0.93279 1.20425 1.07377 0.92937 1.01776 1.20203 0.89668 0.90062 0.92262 1.83884 1.60906 1.21015 1.46603 1.21885 1.39204 0.85986 1.02071 0.87724 1.26601 0.95284 1.03153 0.96740 1.70149 1.35863 1.33943 1.15037 0.84592 0.79762 0.74324 0.77626 1.18815 1.19599 1.17619 1.21198 1.07112 1.02270 0.96306 1.21316 0.93822 0.91434 0.99163 1.22525 0.95326 1.00963 0.82239 1.22186 1.00371 0.96896 0.92011 0.84603 1.22967 0.72548 0.87690 0.82418 1.90731 1.52709 1.18982 1.80604 1.84515 1.74228 1.46345 1.27040 0.92132 0.91805 0.91125 0.90894 0.90683 0.83052 0.85698 0.82182 0.85829 0.91612 0.85827 0.83831 0.86622 0.89239 0.70730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.89 71.98 0.64 -0.77 16 2 C -0.09 -1.01 3.00 -9.90 -0.03 -1.04 16 3 H 0.10 1.32 6.85 -2.39 -0.02 1.30 16 4 C 0.11 1.64 6.62 86.53 0.57 2.21 16 5 N -0.62 -11.00 3.29 -815.29 -2.69 -13.69 16 6 C 0.57 14.00 7.81 86.33 0.67 14.68 16 7 O -0.59 -19.15 16.57 -4.41 -0.07 -19.22 16 8 C -0.25 -5.42 8.91 23.61 0.21 -5.21 16 9 C 0.02 0.55 9.45 23.82 0.23 0.78 16 10 C -0.17 -5.12 5.87 -20.13 -0.12 -5.24 16 11 C -0.04 -1.06 9.40 22.55 0.21 -0.85 16 12 C -0.21 -7.94 9.97 22.34 0.22 -7.72 16 13 C 0.13 6.07 6.66 22.72 0.15 6.23 16 14 O -0.22 -12.50 9.74 -20.26 -0.20 -12.70 16 15 C -0.42 -23.13 9.48 67.93 0.64 -22.48 16 16 H 0.11 5.32 5.18 -2.91 -0.02 5.30 16 17 C -0.02 -1.04 5.49 84.86 0.47 -0.57 16 18 N -0.91 -53.88 13.67 21.62 0.30 -53.58 16 19 Si 1.02 41.14 29.55 68.60 2.03 43.17 16 20 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 23 C -0.25 -10.26 9.14 22.34 0.20 -10.06 16 24 C -0.04 -1.30 9.78 22.55 0.22 -1.08 16 25 C 0.11 1.26 6.31 86.61 0.55 1.81 16 26 C -0.09 -0.97 3.10 -10.45 -0.03 -1.00 16 27 H 0.14 1.10 7.86 -2.39 -0.02 1.08 16 28 C 0.50 5.81 7.63 71.24 0.54 6.36 16 29 O -0.54 -9.57 16.20 21.96 0.36 -9.21 16 30 O -0.51 -3.83 13.42 -51.47 -0.69 -4.52 16 31 H 0.06 0.62 8.13 -2.38 -0.02 0.60 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.31 7.60 -2.39 -0.02 1.30 16 36 H 0.15 2.47 4.67 -2.91 -0.01 2.46 16 37 H 0.13 3.28 7.52 -2.91 -0.02 3.25 16 38 H 0.16 3.34 6.16 -2.91 -0.02 3.32 16 39 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 40 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.12 5.16 5.62 -2.91 -0.02 5.14 16 42 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 43 H 0.12 0.98 6.65 -2.39 -0.02 0.96 16 44 H 0.09 0.89 8.04 -2.39 -0.02 0.87 16 45 H 0.43 0.02 9.10 -74.06 -0.67 -0.65 16 Total: -1.00 -76.90 383.53 4.76 -72.14 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.38 Total: 21.58 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 5.35 Total: -23.96 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -2.39 Total: -67.27 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -0.61 Total: -45.66 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -76.90 4.76 -72.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493412266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.428 kcal (2) G-P(sol) polarization free energy of solvation -76.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds