Wall clock time and date at job start Wed Apr 1 2020 03:09:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08999 * 109.46800 * 2 1
4 4 C 1.50702 * 109.47204 * 240.00371 * 2 1 3
5 5 O 1.20823 * 119.99799 * 239.99977 * 4 2 1
6 6 O 1.34222 * 120.00067 * 60.00137 * 4 2 1
7 7 N 1.46496 * 109.47023 * 120.00022 * 2 1 3
8 8 C 1.34779 * 120.00351 * 238.80328 * 7 2 1
9 9 O 1.21723 * 119.99440 * 354.78584 * 8 7 2
10 10 C 1.46254 * 120.00296 * 174.78897 * 8 7 2
11 11 C 1.35026 * 119.99847 * 184.97097 * 10 8 7
12 12 C 1.46955 * 119.99715 * 179.97438 * 11 10 8
13 13 C 1.40026 * 120.10108 * 359.73225 * 12 11 10
14 14 C 1.37604 * 119.89261 * 179.69586 * 13 12 11
15 15 C 1.39169 * 120.10504 * 0.59855 * 14 13 12
16 16 O 1.35574 * 119.89976 * 179.69842 * 15 14 13
17 17 C 1.34782 * 116.99692 * 186.12587 * 16 15 14
18 18 H 1.07998 * 120.00140 * 5.67883 * 17 16 15
19 19 C 1.38718 * 119.99742 * 185.66465 * 17 16 15
20 20 N 1.31506 * 119.99926 * 0.02562 * 19 17 16
21 21 Si 1.86803 * 120.00136 * 180.02562 * 19 17 16
22 22 H 1.48499 * 109.46900 * 60.00095 * 21 19 17
23 23 H 1.48492 * 109.47225 * 180.02562 * 21 19 17
24 24 H 1.48502 * 109.46859 * 300.00079 * 21 19 17
25 25 C 1.39174 * 120.20242 * 359.66988 * 15 14 13
26 26 C 1.37599 * 120.10094 * 0.03151 * 25 15 14
27 27 C 1.46499 * 119.99925 * 58.80700 * 7 2 1
28 28 C 1.52997 * 117.49830 * 5.71750 * 27 7 2
29 29 C 1.53003 * 117.49728 * 297.06079 * 27 7 2
30 30 H 1.09005 * 109.46927 * 173.16573 * 1 2 3
31 31 H 1.09000 * 109.47235 * 293.16854 * 1 2 3
32 32 H 1.09005 * 109.47317 * 53.16861 * 1 2 3
33 33 H 0.96702 * 116.99972 * 180.02562 * 6 4 2
34 34 H 1.07997 * 119.99871 * 4.96826 * 10 8 7
35 35 H 1.07997 * 119.99965 * 0.02562 * 11 10 8
36 36 H 1.08000 * 120.05405 * 359.97438 * 13 12 11
37 37 H 1.08000 * 119.94385 * 180.27447 * 14 13 12
38 38 H 0.97007 * 120.00227 * 179.97438 * 20 19 17
39 39 H 1.08002 * 119.94938 * 180.02562 * 25 15 14
40 40 H 1.08002 * 120.05243 * 180.02562 * 26 25 15
41 41 H 1.08996 * 115.55374 * 151.39576 * 27 7 2
42 42 H 1.08998 * 117.50011 * 0.02562 * 28 27 7
43 43 H 1.09007 * 117.49616 * 145.02488 * 28 27 7
44 44 H 1.09005 * 117.50025 * 214.98298 * 29 27 7
45 45 H 1.09005 * 117.50019 * 0.02562 * 29 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7103 -1.2305
5 8 2.7270 -1.6927 -1.1197
6 8 1.7081 -0.2517 -2.4496
7 7 2.0183 -0.6906 1.1961
8 6 2.8129 -0.0429 2.0711
9 8 3.2023 1.0830 1.8214
10 6 3.2074 -0.6929 3.3205
11 6 3.9194 -0.0091 4.2417
12 6 4.3153 -0.6620 5.4973
13 6 3.9505 -1.9914 5.7430
14 6 4.3288 -2.6005 6.9174
15 6 5.0622 -1.8936 7.8657
16 8 5.4275 -2.4960 9.0240
17 6 6.0243 -1.7237 9.9535
18 1 6.1092 -0.6585 9.7970
19 6 6.5291 -2.2970 11.1114
20 7 6.4259 -3.5941 11.3019
21 14 7.3556 -1.2267 12.4001
22 1 6.3904 -0.2118 12.8937
23 1 7.8059 -2.0744 13.5330
24 1 8.5281 -0.5429 11.7976
25 6 5.4222 -0.5704 7.6283
26 6 5.0536 0.0451 6.4542
27 6 1.6429 -2.0853 1.4412
28 6 0.8515 -2.8064 0.3483
29 6 0.1582 -2.3913 1.6484
30 1 -0.3633 -1.0204 -0.1223
31 1 -0.3634 0.4043 0.9448
32 1 -0.3634 0.6161 -0.8226
33 1 2.0536 -0.7408 -3.2089
34 1 2.9292 -1.7197 3.5062
35 1 4.1972 1.0179 4.0561
36 1 3.3769 -2.5392 5.0099
37 1 4.0516 -3.6272 7.1058
38 1 6.7792 -3.9952 12.1114
39 1 5.9918 -0.0258 8.3669
40 1 5.3338 1.0719 6.2706
41 1 2.3621 -2.6724 2.0123
42 1 0.6104 -2.2432 -0.5532
43 1 1.0498 -3.8680 0.2006
44 1 -0.0993 -3.1800 2.3554
45 1 -0.5394 -1.5550 1.6018
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000493529304.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:09:12
Heat of formation + Delta-G solvation = -60.098492 kcal
Electronic energy + Delta-G solvation = -29016.153888 eV
Core-core repulsion = 24773.886675 eV
Total energy + Delta-G solvation = -4242.267213 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.145 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.40876 -39.66970 -39.16230 -37.84363 -36.88821 -36.34614 -34.11487 -33.25302
-32.38768 -31.57404 -30.43529 -28.20967 -25.81493 -25.45813 -23.64670 -22.88979
-22.68141 -22.21629 -21.48048 -20.16554 -19.07889 -18.47132 -18.04557 -17.56927
-17.27577 -16.93129 -15.99437 -15.77219 -15.31399 -14.84393 -14.78946 -14.60838
-14.45401 -14.15556 -13.83673 -13.75617 -13.68696 -13.51178 -13.02874 -13.00943
-12.67876 -12.57448 -12.08939 -11.92084 -11.81076 -11.71369 -11.59728 -11.37652
-11.34242 -11.11755 -11.10593 -10.86556 -10.71131 -10.66887 -10.54717 -9.84174
-9.63566 -9.52778 -8.91569 -8.78805 -8.39078 -7.13114 -6.66436 -4.21097
1.00467 1.83459 2.12881 2.25098 2.48991 2.87604 3.03455 3.04624
3.07424 3.37026 3.70704 3.81340 4.30298 4.42860 4.49444 4.55715
4.56561 4.68126 4.83368 4.86343 4.93334 5.01363 5.15870 5.23951
5.26801 5.39536 5.47509 5.51888 5.53366 5.65213 5.69385 5.73145
5.79293 6.00296 6.08244 6.10413 6.13077 6.44289 6.45640 6.59729
6.77898 6.89923 7.10549 7.18023 7.23357 7.29021 7.52473 7.62874
7.78663 8.10770 8.78145 9.45124 10.50010
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.027275 B = 0.001851 C = 0.001789
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1026.343968 B =15124.910040 C =15645.187576
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.148 3.852
3 H 0.139 0.861
4 C 0.464 3.536
5 O -0.494 6.494
6 O -0.516 6.516
7 N -0.572 5.572
8 C 0.569 3.431
9 O -0.553 6.553
10 C -0.281 4.281
11 C 0.043 3.957
12 C -0.200 4.200
13 C -0.041 4.041
14 C -0.200 4.200
15 C 0.167 3.833
16 O -0.161 6.161
17 C -0.393 4.393
18 H 0.097 0.903
19 C 0.042 3.958
20 N -0.851 5.851
21 Si 0.945 3.055
22 H -0.267 1.267
23 H -0.276 1.276
24 H -0.267 1.267
25 C -0.242 4.242
26 C -0.034 4.034
27 C 0.088 3.912
28 C -0.179 4.179
29 C -0.203 4.203
30 H 0.080 0.920
31 H 0.080 0.920
32 H 0.081 0.919
33 H 0.410 0.590
34 H 0.128 0.872
35 H 0.123 0.877
36 H 0.118 0.882
37 H 0.121 0.879
38 H 0.275 0.725
39 H 0.131 0.869
40 H 0.114 0.886
41 H 0.136 0.864
42 H 0.093 0.907
43 H 0.104 0.896
44 H 0.104 0.896
45 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.161 4.312 -21.156 24.780
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.043 3.957
3 H 0.157 0.843
4 C 0.304 3.696
5 O -0.380 6.380
6 O -0.328 6.328
7 N -0.304 5.304
8 C 0.364 3.636
9 O -0.433 6.433
10 C -0.302 4.302
11 C 0.023 3.977
12 C -0.201 4.201
13 C -0.059 4.059
14 C -0.219 4.219
15 C 0.110 3.890
16 O -0.062 6.062
17 C -0.468 4.468
18 H 0.114 0.886
19 C -0.165 4.165
20 N -0.484 5.484
21 Si 0.769 3.231
22 H -0.192 1.192
23 H -0.201 1.201
24 H -0.192 1.192
25 C -0.261 4.261
26 C -0.052 4.052
27 C -0.017 4.017
28 C -0.216 4.216
29 C -0.242 4.242
30 H 0.098 0.902
31 H 0.099 0.901
32 H 0.100 0.900
33 H 0.269 0.731
34 H 0.146 0.854
35 H 0.141 0.859
36 H 0.136 0.864
37 H 0.139 0.861
38 H 0.085 0.915
39 H 0.149 0.851
40 H 0.132 0.868
41 H 0.154 0.846
42 H 0.111 0.889
43 H 0.122 0.878
44 H 0.123 0.877
45 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -11.833 4.416 -20.603 24.166
hybrid contribution 0.732 0.036 -0.002 0.733
sum -11.101 4.452 -20.605 23.825
Atomic orbital electron populations
1.22587 0.91654 1.04458 1.04375 1.20399 0.96120 0.98443 0.80785
0.84320 1.23908 0.77672 0.82977 0.85016 1.90773 1.34835 1.25426
1.86932 1.84528 1.72388 1.59161 1.16693 1.47037 1.50622 1.11988
1.20774 1.18462 0.76210 0.85050 0.83840 1.90777 1.55182 1.19640
1.77718 1.22400 1.10721 1.01874 0.95186 1.22312 0.87197 0.98055
0.90104 1.18434 1.10133 0.95416 0.96112 1.20874 0.96341 0.93380
0.95330 1.20143 1.06021 1.00802 0.94924 1.19633 0.91524 0.91279
0.86522 1.83924 1.64603 1.37412 1.20255 1.21421 1.37351 0.91572
0.96470 0.88609 1.25403 0.96689 0.96494 0.97897 1.70003 1.41333
1.10024 1.27000 0.85714 0.79470 0.78944 0.79014 1.19226 1.20079
1.19243 1.21103 1.08923 0.96212 0.99882 1.20988 0.93875 0.98106
0.92248 1.21657 0.94191 0.82621 1.03212 1.23442 1.03522 1.01522
0.93138 1.23835 0.96104 1.04224 0.99994 0.90187 0.90121 0.90035
0.73111 0.85449 0.85928 0.86444 0.86116 0.91514 0.85118 0.86801
0.84647 0.88857 0.87785 0.87733 0.87734
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.18 7.67 37.16 0.29 -0.89 16
2 C 0.15 1.46 3.07 -69.08 -0.21 1.25 16
3 H 0.14 1.48 6.91 -51.93 -0.36 1.12 16
4 C 0.46 4.57 5.86 36.01 0.21 4.78 16
5 O -0.49 -6.22 14.69 -18.75 -0.28 -6.50 16
6 O -0.52 -3.52 13.35 -39.24 -0.52 -4.04 16
7 N -0.57 -6.63 2.49 -161.58 -0.40 -7.03 16
8 C 0.57 8.19 7.59 -13.04 -0.10 8.09 16
9 O -0.55 -9.42 15.59 5.17 0.08 -9.34 16
10 C -0.28 -3.91 8.69 -37.50 -0.33 -4.23 16
11 C 0.04 0.65 9.45 -37.19 -0.35 0.30 16
12 C -0.20 -3.37 5.87 -105.03 -0.62 -3.99 16
13 C -0.04 -0.69 9.40 -39.14 -0.37 -1.06 16
14 C -0.20 -3.95 9.97 -39.47 -0.39 -4.34 16
15 C 0.17 3.81 6.66 -38.89 -0.26 3.55 16
16 O -0.16 -4.34 9.74 0.73 0.01 -4.34 16
17 C -0.39 -10.36 9.43 30.91 0.29 -10.07 16
18 H 0.10 2.32 5.29 -52.49 -0.28 2.04 16
19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16
20 N -0.85 -23.70 13.67 55.48 0.76 -22.94 16
21 Si 0.94 19.41 29.55 -169.99 -5.02 14.39 16
22 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16
23 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16
24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16
25 C -0.24 -4.96 9.11 -39.47 -0.36 -5.32 16
26 C -0.03 -0.60 9.78 -39.15 -0.38 -0.98 16
27 C 0.09 0.86 5.08 -67.93 -0.35 0.52 16
28 C -0.18 -1.49 7.68 -26.70 -0.20 -1.69 16
29 C -0.20 -1.54 9.59 -26.69 -0.26 -1.80 16
30 H 0.08 0.51 3.95 -51.93 -0.21 0.30 16
31 H 0.08 0.55 7.75 -51.93 -0.40 0.15 16
32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16
33 H 0.41 1.16 9.10 45.56 0.41 1.58 16
34 H 0.13 1.56 4.32 -52.49 -0.23 1.33 16
35 H 0.12 1.82 7.53 -52.49 -0.40 1.42 16
36 H 0.12 1.61 6.16 -52.49 -0.32 1.29 16
37 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16
38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16
39 H 0.13 2.66 5.70 -52.49 -0.30 2.36 16
40 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16
41 H 0.14 1.32 6.60 -51.93 -0.34 0.97 16
42 H 0.09 0.77 3.87 -51.93 -0.20 0.57 16
43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16
44 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16
45 H 0.10 0.74 5.66 -51.93 -0.29 0.45 16
LS Contribution 372.48 15.07 5.61 5.61
Total: -1.00 -32.64 372.48 -7.41 -40.05
By element:
Atomic # 1 Polarization: 13.20 SS G_CDS: -4.16 Total: 9.04 kcal
Atomic # 6 Polarization: -11.42 SS G_CDS: -3.48 Total: -14.90 kcal
Atomic # 7 Polarization: -30.33 SS G_CDS: 0.36 Total: -29.98 kcal
Atomic # 8 Polarization: -23.50 SS G_CDS: -0.71 Total: -24.22 kcal
Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -32.64 -7.41 -40.05 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000493529304.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.047 kcal
(2) G-P(sol) polarization free energy of solvation -32.644 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.691 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.098 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds