Wall clock time and date at job start Wed Apr 1 2020 03:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46800 * 2 1 4 4 C 1.50702 * 109.47204 * 240.00371 * 2 1 3 5 5 O 1.20823 * 119.99799 * 239.99977 * 4 2 1 6 6 O 1.34222 * 120.00067 * 60.00137 * 4 2 1 7 7 N 1.46496 * 109.47023 * 120.00022 * 2 1 3 8 8 C 1.34779 * 120.00351 * 238.80328 * 7 2 1 9 9 O 1.21723 * 119.99440 * 354.78584 * 8 7 2 10 10 C 1.46254 * 120.00296 * 174.78897 * 8 7 2 11 11 C 1.35026 * 119.99847 * 184.97097 * 10 8 7 12 12 C 1.46955 * 119.99715 * 179.97438 * 11 10 8 13 13 C 1.40026 * 120.10108 * 359.73225 * 12 11 10 14 14 C 1.37604 * 119.89261 * 179.69586 * 13 12 11 15 15 C 1.39169 * 120.10504 * 0.59855 * 14 13 12 16 16 O 1.35574 * 119.89976 * 179.69842 * 15 14 13 17 17 C 1.34782 * 116.99692 * 186.12587 * 16 15 14 18 18 H 1.07998 * 120.00140 * 5.67883 * 17 16 15 19 19 C 1.38718 * 119.99742 * 185.66465 * 17 16 15 20 20 N 1.31506 * 119.99926 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00136 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46900 * 60.00095 * 21 19 17 23 23 H 1.48492 * 109.47225 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46859 * 300.00079 * 21 19 17 25 25 C 1.39174 * 120.20242 * 359.66988 * 15 14 13 26 26 C 1.37599 * 120.10094 * 0.03151 * 25 15 14 27 27 C 1.46499 * 119.99925 * 58.80700 * 7 2 1 28 28 C 1.52997 * 117.49830 * 5.71750 * 27 7 2 29 29 C 1.53003 * 117.49728 * 297.06079 * 27 7 2 30 30 H 1.09005 * 109.46927 * 173.16573 * 1 2 3 31 31 H 1.09000 * 109.47235 * 293.16854 * 1 2 3 32 32 H 1.09005 * 109.47317 * 53.16861 * 1 2 3 33 33 H 0.96702 * 116.99972 * 180.02562 * 6 4 2 34 34 H 1.07997 * 119.99871 * 4.96826 * 10 8 7 35 35 H 1.07997 * 119.99965 * 0.02562 * 11 10 8 36 36 H 1.08000 * 120.05405 * 359.97438 * 13 12 11 37 37 H 1.08000 * 119.94385 * 180.27447 * 14 13 12 38 38 H 0.97007 * 120.00227 * 179.97438 * 20 19 17 39 39 H 1.08002 * 119.94938 * 180.02562 * 25 15 14 40 40 H 1.08002 * 120.05243 * 180.02562 * 26 25 15 41 41 H 1.08996 * 115.55374 * 151.39576 * 27 7 2 42 42 H 1.08998 * 117.50011 * 0.02562 * 28 27 7 43 43 H 1.09007 * 117.49616 * 145.02488 * 28 27 7 44 44 H 1.09005 * 117.50025 * 214.98298 * 29 27 7 45 45 H 1.09005 * 117.50019 * 0.02562 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7270 -1.6927 -1.1197 6 8 1.7081 -0.2517 -2.4496 7 7 2.0183 -0.6906 1.1961 8 6 2.8129 -0.0429 2.0711 9 8 3.2023 1.0830 1.8214 10 6 3.2074 -0.6929 3.3205 11 6 3.9194 -0.0091 4.2417 12 6 4.3153 -0.6620 5.4973 13 6 3.9505 -1.9914 5.7430 14 6 4.3288 -2.6005 6.9174 15 6 5.0622 -1.8936 7.8657 16 8 5.4275 -2.4960 9.0240 17 6 6.0243 -1.7237 9.9535 18 1 6.1092 -0.6585 9.7970 19 6 6.5291 -2.2970 11.1114 20 7 6.4259 -3.5941 11.3019 21 14 7.3556 -1.2267 12.4001 22 1 6.3904 -0.2118 12.8937 23 1 7.8059 -2.0744 13.5330 24 1 8.5281 -0.5429 11.7976 25 6 5.4222 -0.5704 7.6283 26 6 5.0536 0.0451 6.4542 27 6 1.6429 -2.0853 1.4412 28 6 0.8515 -2.8064 0.3483 29 6 0.1582 -2.3913 1.6484 30 1 -0.3633 -1.0204 -0.1223 31 1 -0.3634 0.4043 0.9448 32 1 -0.3634 0.6161 -0.8226 33 1 2.0536 -0.7408 -3.2089 34 1 2.9292 -1.7197 3.5062 35 1 4.1972 1.0179 4.0561 36 1 3.3769 -2.5392 5.0099 37 1 4.0516 -3.6272 7.1058 38 1 6.7792 -3.9952 12.1114 39 1 5.9918 -0.0258 8.3669 40 1 5.3338 1.0719 6.2706 41 1 2.3621 -2.6724 2.0123 42 1 0.6104 -2.2432 -0.5532 43 1 1.0498 -3.8680 0.2006 44 1 -0.0993 -3.1800 2.3554 45 1 -0.5394 -1.5550 1.6018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493529304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:12 Heat of formation + Delta-G solvation = -60.098492 kcal Electronic energy + Delta-G solvation = -29016.153888 eV Core-core repulsion = 24773.886675 eV Total energy + Delta-G solvation = -4242.267213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40876 -39.66970 -39.16230 -37.84363 -36.88821 -36.34614 -34.11487 -33.25302 -32.38768 -31.57404 -30.43529 -28.20967 -25.81493 -25.45813 -23.64670 -22.88979 -22.68141 -22.21629 -21.48048 -20.16554 -19.07889 -18.47132 -18.04557 -17.56927 -17.27577 -16.93129 -15.99437 -15.77219 -15.31399 -14.84393 -14.78946 -14.60838 -14.45401 -14.15556 -13.83673 -13.75617 -13.68696 -13.51178 -13.02874 -13.00943 -12.67876 -12.57448 -12.08939 -11.92084 -11.81076 -11.71369 -11.59728 -11.37652 -11.34242 -11.11755 -11.10593 -10.86556 -10.71131 -10.66887 -10.54717 -9.84174 -9.63566 -9.52778 -8.91569 -8.78805 -8.39078 -7.13114 -6.66436 -4.21097 1.00467 1.83459 2.12881 2.25098 2.48991 2.87604 3.03455 3.04624 3.07424 3.37026 3.70704 3.81340 4.30298 4.42860 4.49444 4.55715 4.56561 4.68126 4.83368 4.86343 4.93334 5.01363 5.15870 5.23951 5.26801 5.39536 5.47509 5.51888 5.53366 5.65213 5.69385 5.73145 5.79293 6.00296 6.08244 6.10413 6.13077 6.44289 6.45640 6.59729 6.77898 6.89923 7.10549 7.18023 7.23357 7.29021 7.52473 7.62874 7.78663 8.10770 8.78145 9.45124 10.50010 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027275 B = 0.001851 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.343968 B =15124.910040 C =15645.187576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.148 3.852 3 H 0.139 0.861 4 C 0.464 3.536 5 O -0.494 6.494 6 O -0.516 6.516 7 N -0.572 5.572 8 C 0.569 3.431 9 O -0.553 6.553 10 C -0.281 4.281 11 C 0.043 3.957 12 C -0.200 4.200 13 C -0.041 4.041 14 C -0.200 4.200 15 C 0.167 3.833 16 O -0.161 6.161 17 C -0.393 4.393 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.851 5.851 21 Si 0.945 3.055 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.242 4.242 26 C -0.034 4.034 27 C 0.088 3.912 28 C -0.179 4.179 29 C -0.203 4.203 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.410 0.590 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.275 0.725 39 H 0.131 0.869 40 H 0.114 0.886 41 H 0.136 0.864 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.161 4.312 -21.156 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.043 3.957 3 H 0.157 0.843 4 C 0.304 3.696 5 O -0.380 6.380 6 O -0.328 6.328 7 N -0.304 5.304 8 C 0.364 3.636 9 O -0.433 6.433 10 C -0.302 4.302 11 C 0.023 3.977 12 C -0.201 4.201 13 C -0.059 4.059 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.062 6.062 17 C -0.468 4.468 18 H 0.114 0.886 19 C -0.165 4.165 20 N -0.484 5.484 21 Si 0.769 3.231 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.261 4.261 26 C -0.052 4.052 27 C -0.017 4.017 28 C -0.216 4.216 29 C -0.242 4.242 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.269 0.731 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.149 0.851 40 H 0.132 0.868 41 H 0.154 0.846 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.833 4.416 -20.603 24.166 hybrid contribution 0.732 0.036 -0.002 0.733 sum -11.101 4.452 -20.605 23.825 Atomic orbital electron populations 1.22587 0.91654 1.04458 1.04375 1.20399 0.96120 0.98443 0.80785 0.84320 1.23908 0.77672 0.82977 0.85016 1.90773 1.34835 1.25426 1.86932 1.84528 1.72388 1.59161 1.16693 1.47037 1.50622 1.11988 1.20774 1.18462 0.76210 0.85050 0.83840 1.90777 1.55182 1.19640 1.77718 1.22400 1.10721 1.01874 0.95186 1.22312 0.87197 0.98055 0.90104 1.18434 1.10133 0.95416 0.96112 1.20874 0.96341 0.93380 0.95330 1.20143 1.06021 1.00802 0.94924 1.19633 0.91524 0.91279 0.86522 1.83924 1.64603 1.37412 1.20255 1.21421 1.37351 0.91572 0.96470 0.88609 1.25403 0.96689 0.96494 0.97897 1.70003 1.41333 1.10024 1.27000 0.85714 0.79470 0.78944 0.79014 1.19226 1.20079 1.19243 1.21103 1.08923 0.96212 0.99882 1.20988 0.93875 0.98106 0.92248 1.21657 0.94191 0.82621 1.03212 1.23442 1.03522 1.01522 0.93138 1.23835 0.96104 1.04224 0.99994 0.90187 0.90121 0.90035 0.73111 0.85449 0.85928 0.86444 0.86116 0.91514 0.85118 0.86801 0.84647 0.88857 0.87785 0.87733 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 7.67 37.16 0.29 -0.89 16 2 C 0.15 1.46 3.07 -69.08 -0.21 1.25 16 3 H 0.14 1.48 6.91 -51.93 -0.36 1.12 16 4 C 0.46 4.57 5.86 36.01 0.21 4.78 16 5 O -0.49 -6.22 14.69 -18.75 -0.28 -6.50 16 6 O -0.52 -3.52 13.35 -39.24 -0.52 -4.04 16 7 N -0.57 -6.63 2.49 -161.58 -0.40 -7.03 16 8 C 0.57 8.19 7.59 -13.04 -0.10 8.09 16 9 O -0.55 -9.42 15.59 5.17 0.08 -9.34 16 10 C -0.28 -3.91 8.69 -37.50 -0.33 -4.23 16 11 C 0.04 0.65 9.45 -37.19 -0.35 0.30 16 12 C -0.20 -3.37 5.87 -105.03 -0.62 -3.99 16 13 C -0.04 -0.69 9.40 -39.14 -0.37 -1.06 16 14 C -0.20 -3.95 9.97 -39.47 -0.39 -4.34 16 15 C 0.17 3.81 6.66 -38.89 -0.26 3.55 16 16 O -0.16 -4.34 9.74 0.73 0.01 -4.34 16 17 C -0.39 -10.36 9.43 30.91 0.29 -10.07 16 18 H 0.10 2.32 5.29 -52.49 -0.28 2.04 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.85 -23.70 13.67 55.48 0.76 -22.94 16 21 Si 0.94 19.41 29.55 -169.99 -5.02 14.39 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 C -0.24 -4.96 9.11 -39.47 -0.36 -5.32 16 26 C -0.03 -0.60 9.78 -39.15 -0.38 -0.98 16 27 C 0.09 0.86 5.08 -67.93 -0.35 0.52 16 28 C -0.18 -1.49 7.68 -26.70 -0.20 -1.69 16 29 C -0.20 -1.54 9.59 -26.69 -0.26 -1.80 16 30 H 0.08 0.51 3.95 -51.93 -0.21 0.30 16 31 H 0.08 0.55 7.75 -51.93 -0.40 0.15 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.41 1.16 9.10 45.56 0.41 1.58 16 34 H 0.13 1.56 4.32 -52.49 -0.23 1.33 16 35 H 0.12 1.82 7.53 -52.49 -0.40 1.42 16 36 H 0.12 1.61 6.16 -52.49 -0.32 1.29 16 37 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.13 2.66 5.70 -52.49 -0.30 2.36 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.14 1.32 6.60 -51.93 -0.34 0.97 16 42 H 0.09 0.77 3.87 -51.93 -0.20 0.57 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.74 5.66 -51.93 -0.29 0.45 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -32.64 372.48 -7.41 -40.05 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.16 Total: 9.04 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -3.48 Total: -14.90 kcal Atomic # 7 Polarization: -30.33 SS G_CDS: 0.36 Total: -29.98 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.71 Total: -24.22 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.64 -7.41 -40.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493529304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.047 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds