Wall clock time and date at job start Wed Apr 1 2020 03:09:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08999 * 109.46800 * 2 1
4 4 C 1.50702 * 109.47204 * 240.00371 * 2 1 3
5 5 O 1.20823 * 119.99799 * 239.99977 * 4 2 1
6 6 O 1.34222 * 120.00067 * 60.00137 * 4 2 1
7 7 N 1.46496 * 109.47023 * 120.00022 * 2 1 3
8 8 C 1.34779 * 120.00351 * 238.80328 * 7 2 1
9 9 O 1.21723 * 119.99440 * 354.78584 * 8 7 2
10 10 C 1.46254 * 120.00296 * 174.78897 * 8 7 2
11 11 C 1.35026 * 119.99847 * 184.97097 * 10 8 7
12 12 C 1.46955 * 119.99715 * 179.97438 * 11 10 8
13 13 C 1.40026 * 120.10108 * 359.73225 * 12 11 10
14 14 C 1.37604 * 119.89261 * 179.69586 * 13 12 11
15 15 C 1.39169 * 120.10504 * 0.59855 * 14 13 12
16 16 O 1.35574 * 119.89976 * 179.69842 * 15 14 13
17 17 C 1.34782 * 116.99692 * 186.12587 * 16 15 14
18 18 H 1.07998 * 120.00140 * 5.67883 * 17 16 15
19 19 C 1.38718 * 119.99742 * 185.66465 * 17 16 15
20 20 N 1.31506 * 119.99926 * 0.02562 * 19 17 16
21 21 Si 1.86803 * 120.00136 * 180.02562 * 19 17 16
22 22 H 1.48499 * 109.46900 * 60.00095 * 21 19 17
23 23 H 1.48492 * 109.47225 * 180.02562 * 21 19 17
24 24 H 1.48502 * 109.46859 * 300.00079 * 21 19 17
25 25 C 1.39174 * 120.20242 * 359.66988 * 15 14 13
26 26 C 1.37599 * 120.10094 * 0.03151 * 25 15 14
27 27 C 1.46499 * 119.99925 * 58.80700 * 7 2 1
28 28 C 1.52997 * 117.49830 * 5.71750 * 27 7 2
29 29 C 1.53003 * 117.49728 * 297.06079 * 27 7 2
30 30 H 1.09005 * 109.46927 * 173.16573 * 1 2 3
31 31 H 1.09000 * 109.47235 * 293.16854 * 1 2 3
32 32 H 1.09005 * 109.47317 * 53.16861 * 1 2 3
33 33 H 0.96702 * 116.99972 * 180.02562 * 6 4 2
34 34 H 1.07997 * 119.99871 * 4.96826 * 10 8 7
35 35 H 1.07997 * 119.99965 * 0.02562 * 11 10 8
36 36 H 1.08000 * 120.05405 * 359.97438 * 13 12 11
37 37 H 1.08000 * 119.94385 * 180.27447 * 14 13 12
38 38 H 0.97007 * 120.00227 * 179.97438 * 20 19 17
39 39 H 1.08002 * 119.94938 * 180.02562 * 25 15 14
40 40 H 1.08002 * 120.05243 * 180.02562 * 26 25 15
41 41 H 1.08996 * 115.55374 * 151.39576 * 27 7 2
42 42 H 1.08998 * 117.50011 * 0.02562 * 28 27 7
43 43 H 1.09007 * 117.49616 * 145.02488 * 28 27 7
44 44 H 1.09005 * 117.50025 * 214.98298 * 29 27 7
45 45 H 1.09005 * 117.50019 * 0.02562 * 29 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7103 -1.2305
5 8 2.7270 -1.6927 -1.1197
6 8 1.7081 -0.2517 -2.4496
7 7 2.0183 -0.6906 1.1961
8 6 2.8129 -0.0429 2.0711
9 8 3.2023 1.0830 1.8214
10 6 3.2074 -0.6929 3.3205
11 6 3.9194 -0.0091 4.2417
12 6 4.3153 -0.6620 5.4973
13 6 3.9505 -1.9914 5.7430
14 6 4.3288 -2.6005 6.9174
15 6 5.0622 -1.8936 7.8657
16 8 5.4275 -2.4960 9.0240
17 6 6.0243 -1.7237 9.9535
18 1 6.1092 -0.6585 9.7970
19 6 6.5291 -2.2970 11.1114
20 7 6.4259 -3.5941 11.3019
21 14 7.3556 -1.2267 12.4001
22 1 6.3904 -0.2118 12.8937
23 1 7.8059 -2.0744 13.5330
24 1 8.5281 -0.5429 11.7976
25 6 5.4222 -0.5704 7.6283
26 6 5.0536 0.0451 6.4542
27 6 1.6429 -2.0853 1.4412
28 6 0.8515 -2.8064 0.3483
29 6 0.1582 -2.3913 1.6484
30 1 -0.3633 -1.0204 -0.1223
31 1 -0.3634 0.4043 0.9448
32 1 -0.3634 0.6161 -0.8226
33 1 2.0536 -0.7408 -3.2089
34 1 2.9292 -1.7197 3.5062
35 1 4.1972 1.0179 4.0561
36 1 3.3769 -2.5392 5.0099
37 1 4.0516 -3.6272 7.1058
38 1 6.7792 -3.9952 12.1114
39 1 5.9918 -0.0258 8.3669
40 1 5.3338 1.0719 6.2706
41 1 2.3621 -2.6724 2.0123
42 1 0.6104 -2.2432 -0.5532
43 1 1.0498 -3.8680 0.2006
44 1 -0.0993 -3.1800 2.3554
45 1 -0.5394 -1.5550 1.6018
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000493529304.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:09:12
Heat of formation + Delta-G solvation = -80.483440 kcal
Electronic energy + Delta-G solvation = -29017.037846 eV
Core-core repulsion = 24773.886675 eV
Total energy + Delta-G solvation = -4243.151171 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.145 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.22598 -40.87837 -40.51826 -38.78737 -38.41401 -37.06276 -35.00045 -34.64369
-34.04722 -32.49686 -31.95594 -29.62183 -27.52032 -26.29011 -24.86713 -23.82779
-23.57074 -23.31475 -22.65374 -21.27405 -20.20426 -19.77439 -19.06837 -18.78423
-18.63108 -17.96461 -16.89882 -16.75722 -16.46855 -16.27351 -16.02776 -15.86880
-15.61053 -15.56977 -15.22535 -14.86165 -14.73790 -14.39786 -14.37665 -14.05708
-13.80113 -13.58213 -13.32343 -13.32126 -13.07709 -12.74666 -12.67661 -12.57535
-12.24137 -12.20527 -12.16389 -12.13720 -12.02777 -11.64074 -11.44682 -11.25048
-11.10446 -10.88540 -10.57995 -9.88860 -9.68320 -8.68813 -8.52085 -6.17962
-0.29670 0.59040 1.05262 1.08934 1.36113 1.46072 1.49893 1.51839
2.06160 2.15710 2.30171 2.85001 2.96805 3.18721 3.40523 3.44836
3.70361 3.81100 3.87494 3.94066 3.99543 4.05570 4.09542 4.19373
4.26558 4.32725 4.48175 4.60249 4.64160 4.66271 4.80563 4.84705
4.94009 4.98358 5.02720 5.13102 5.18898 5.20202 5.22608 5.32056
5.36747 5.53139 5.58050 5.64184 5.79887 5.97071 6.10287 6.21817
6.89167 6.92250 7.01922 7.69339 8.69792
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.027275 B = 0.001851 C = 0.001789
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1026.343968 B =15124.910040 C =15645.187576
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.139 3.861
3 H 0.129 0.871
4 C 0.471 3.529
5 O -0.526 6.526
6 O -0.506 6.506
7 N -0.565 5.565
8 C 0.561 3.439
9 O -0.584 6.584
10 C -0.248 4.248
11 C 0.024 3.976
12 C -0.172 4.172
13 C -0.036 4.036
14 C -0.207 4.207
15 C 0.131 3.869
16 O -0.219 6.219
17 C -0.416 4.416
18 H 0.105 0.895
19 C -0.019 4.019
20 N -0.913 5.913
21 Si 1.018 2.982
22 H -0.257 1.257
23 H -0.272 1.272
24 H -0.257 1.257
25 C -0.249 4.249
26 C -0.038 4.038
27 C 0.057 3.943
28 C -0.174 4.174
29 C -0.183 4.183
30 H 0.087 0.913
31 H 0.082 0.918
32 H 0.098 0.902
33 H 0.429 0.571
34 H 0.149 0.851
35 H 0.128 0.872
36 H 0.157 0.843
37 H 0.123 0.877
38 H 0.275 0.725
39 H 0.125 0.875
40 H 0.145 0.855
41 H 0.137 0.863
42 H 0.094 0.906
43 H 0.109 0.891
44 H 0.118 0.882
45 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.134 5.643 -24.272 28.649
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.034 3.966
3 H 0.146 0.854
4 C 0.313 3.687
5 O -0.414 6.414
6 O -0.319 6.319
7 N -0.296 5.296
8 C 0.355 3.645
9 O -0.466 6.466
10 C -0.268 4.268
11 C 0.005 3.995
12 C -0.173 4.173
13 C -0.054 4.054
14 C -0.226 4.226
15 C 0.079 3.921
16 O -0.124 6.124
17 C -0.492 4.492
18 H 0.122 0.878
19 C -0.218 4.218
20 N -0.550 5.550
21 Si 0.837 3.163
22 H -0.181 1.181
23 H -0.196 1.196
24 H -0.181 1.181
25 C -0.268 4.268
26 C -0.056 4.056
27 C -0.047 4.047
28 C -0.211 4.211
29 C -0.221 4.221
30 H 0.106 0.894
31 H 0.101 0.899
32 H 0.117 0.883
33 H 0.291 0.709
34 H 0.167 0.833
35 H 0.146 0.854
36 H 0.175 0.825
37 H 0.141 0.859
38 H 0.084 0.916
39 H 0.143 0.857
40 H 0.163 0.837
41 H 0.154 0.846
42 H 0.112 0.888
43 H 0.127 0.873
44 H 0.136 0.864
45 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges -13.862 5.766 -23.829 28.164
hybrid contribution 1.054 -0.250 0.248 1.111
sum -12.808 5.515 -23.581 27.395
Atomic orbital electron populations
1.22563 0.89078 1.05344 1.05254 1.20624 0.98063 0.97624 0.80319
0.85378 1.23809 0.76887 0.82290 0.85763 1.90769 1.36312 1.26871
1.87494 1.84478 1.71926 1.59027 1.16517 1.47042 1.49297 1.12619
1.20619 1.18553 0.76629 0.84832 0.84464 1.90771 1.56425 1.20963
1.78466 1.22703 1.07545 1.02410 0.94185 1.22209 0.89009 0.98615
0.89701 1.18748 1.07296 0.95149 0.96105 1.21260 0.95766 0.93541
0.94787 1.20407 1.05643 1.01142 0.95388 1.20201 0.92640 0.92636
0.86660 1.83899 1.67821 1.38608 1.22023 1.21838 1.37807 0.92217
0.97318 0.87754 1.26615 0.97267 0.97897 0.99990 1.70141 1.44523
1.12145 1.28151 0.84651 0.78590 0.77112 0.75948 1.18074 1.19639
1.18150 1.21209 1.09065 0.95565 1.00963 1.21317 0.93500 0.99611
0.91146 1.21913 0.95823 0.81748 1.05171 1.23470 1.02784 1.01605
0.93261 1.23896 0.94214 1.04482 0.99546 0.89447 0.89937 0.88296
0.70873 0.83313 0.85423 0.82529 0.85887 0.91583 0.85711 0.83682
0.84590 0.88811 0.87296 0.86362 0.86978
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.70 7.67 71.98 0.55 -1.14 16
2 C 0.14 2.39 3.07 44.25 0.14 2.52 16
3 H 0.13 2.51 6.91 -2.39 -0.02 2.50 16
4 C 0.47 8.13 5.86 71.24 0.42 8.54 16
5 O -0.53 -12.15 14.69 21.97 0.32 -11.83 16
6 O -0.51 -5.43 13.35 -51.34 -0.69 -6.12 16
7 N -0.57 -11.55 2.49 -783.31 -1.95 -13.50 16
8 C 0.56 14.66 7.59 86.33 0.65 15.32 16
9 O -0.58 -18.79 15.59 -4.42 -0.07 -18.86 16
10 C -0.25 -6.01 8.69 23.62 0.21 -5.81 16
11 C 0.02 0.66 9.45 23.82 0.23 0.88 16
12 C -0.17 -5.35 5.87 -20.13 -0.12 -5.46 16
13 C -0.04 -1.12 9.40 22.55 0.21 -0.91 16
14 C -0.21 -8.20 9.97 22.34 0.22 -7.98 16
15 C 0.13 6.20 6.66 22.72 0.15 6.35 16
16 O -0.22 -12.61 9.74 -20.31 -0.20 -12.80 16
17 C -0.42 -23.31 9.43 67.93 0.64 -22.67 16
18 H 0.11 5.33 5.29 -2.91 -0.02 5.31 16
19 C -0.02 -1.03 5.49 84.86 0.47 -0.57 16
20 N -0.91 -54.23 13.67 21.62 0.30 -53.93 16
21 Si 1.02 41.34 29.55 68.60 2.03 43.37 16
22 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16
23 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16
24 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16
25 C -0.25 -10.37 9.11 22.34 0.20 -10.17 16
26 C -0.04 -1.27 9.78 22.55 0.22 -1.05 16
27 C 0.06 0.94 5.08 44.99 0.23 1.17 16
28 C -0.17 -2.32 7.68 30.62 0.24 -2.09 16
29 C -0.18 -2.06 9.59 30.62 0.29 -1.77 16
30 H 0.09 0.78 3.95 -2.38 -0.01 0.77 16
31 H 0.08 0.85 7.75 -2.39 -0.02 0.83 16
32 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16
33 H 0.43 1.17 9.10 -74.06 -0.67 0.49 16
34 H 0.15 2.94 4.32 -2.91 -0.01 2.92 16
35 H 0.13 3.42 7.53 -2.91 -0.02 3.39 16
36 H 0.16 3.62 6.16 -2.91 -0.02 3.60 16
37 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16
38 H 0.28 14.98 8.31 -92.70 -0.77 14.21 16
39 H 0.13 5.25 5.70 -2.91 -0.02 5.24 16
40 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16
41 H 0.14 2.17 6.60 -2.39 -0.02 2.15 16
42 H 0.09 1.25 3.87 -2.39 -0.01 1.25 16
43 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16
44 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16
45 H 0.11 1.12 5.66 -2.38 -0.01 1.11 16
Total: -1.00 -76.26 372.48 5.09 -71.17
By element:
Atomic # 1 Polarization: 26.91 SS G_CDS: 0.40 Total: 27.31 kcal
Atomic # 6 Polarization: -29.76 SS G_CDS: 4.95 Total: -24.81 kcal
Atomic # 7 Polarization: -65.78 SS G_CDS: -1.66 Total: -67.43 kcal
Atomic # 8 Polarization: -48.97 SS G_CDS: -0.63 Total: -49.60 kcal
Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal
Total: -76.26 5.09 -71.17 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000493529304.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.316 kcal
(2) G-P(sol) polarization free energy of solvation -76.260 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.576 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.167 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.483 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds