Wall clock time and date at job start Wed Apr 1 2020 03:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46800 * 2 1 4 4 C 1.50702 * 109.47204 * 240.00371 * 2 1 3 5 5 O 1.20823 * 119.99799 * 239.99977 * 4 2 1 6 6 O 1.34222 * 120.00067 * 60.00137 * 4 2 1 7 7 N 1.46496 * 109.47023 * 120.00022 * 2 1 3 8 8 C 1.34779 * 120.00351 * 238.80328 * 7 2 1 9 9 O 1.21723 * 119.99440 * 354.78584 * 8 7 2 10 10 C 1.46254 * 120.00296 * 174.78897 * 8 7 2 11 11 C 1.35026 * 119.99847 * 184.97097 * 10 8 7 12 12 C 1.46955 * 119.99715 * 179.97438 * 11 10 8 13 13 C 1.40026 * 120.10108 * 359.73225 * 12 11 10 14 14 C 1.37604 * 119.89261 * 179.69586 * 13 12 11 15 15 C 1.39169 * 120.10504 * 0.59855 * 14 13 12 16 16 O 1.35574 * 119.89976 * 179.69842 * 15 14 13 17 17 C 1.34782 * 116.99692 * 186.12587 * 16 15 14 18 18 H 1.07998 * 120.00140 * 5.67883 * 17 16 15 19 19 C 1.38718 * 119.99742 * 185.66465 * 17 16 15 20 20 N 1.31506 * 119.99926 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00136 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46900 * 60.00095 * 21 19 17 23 23 H 1.48492 * 109.47225 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46859 * 300.00079 * 21 19 17 25 25 C 1.39174 * 120.20242 * 359.66988 * 15 14 13 26 26 C 1.37599 * 120.10094 * 0.03151 * 25 15 14 27 27 C 1.46499 * 119.99925 * 58.80700 * 7 2 1 28 28 C 1.52997 * 117.49830 * 5.71750 * 27 7 2 29 29 C 1.53003 * 117.49728 * 297.06079 * 27 7 2 30 30 H 1.09005 * 109.46927 * 173.16573 * 1 2 3 31 31 H 1.09000 * 109.47235 * 293.16854 * 1 2 3 32 32 H 1.09005 * 109.47317 * 53.16861 * 1 2 3 33 33 H 0.96702 * 116.99972 * 180.02562 * 6 4 2 34 34 H 1.07997 * 119.99871 * 4.96826 * 10 8 7 35 35 H 1.07997 * 119.99965 * 0.02562 * 11 10 8 36 36 H 1.08000 * 120.05405 * 359.97438 * 13 12 11 37 37 H 1.08000 * 119.94385 * 180.27447 * 14 13 12 38 38 H 0.97007 * 120.00227 * 179.97438 * 20 19 17 39 39 H 1.08002 * 119.94938 * 180.02562 * 25 15 14 40 40 H 1.08002 * 120.05243 * 180.02562 * 26 25 15 41 41 H 1.08996 * 115.55374 * 151.39576 * 27 7 2 42 42 H 1.08998 * 117.50011 * 0.02562 * 28 27 7 43 43 H 1.09007 * 117.49616 * 145.02488 * 28 27 7 44 44 H 1.09005 * 117.50025 * 214.98298 * 29 27 7 45 45 H 1.09005 * 117.50019 * 0.02562 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7270 -1.6927 -1.1197 6 8 1.7081 -0.2517 -2.4496 7 7 2.0183 -0.6906 1.1961 8 6 2.8129 -0.0429 2.0711 9 8 3.2023 1.0830 1.8214 10 6 3.2074 -0.6929 3.3205 11 6 3.9194 -0.0091 4.2417 12 6 4.3153 -0.6620 5.4973 13 6 3.9505 -1.9914 5.7430 14 6 4.3288 -2.6005 6.9174 15 6 5.0622 -1.8936 7.8657 16 8 5.4275 -2.4960 9.0240 17 6 6.0243 -1.7237 9.9535 18 1 6.1092 -0.6585 9.7970 19 6 6.5291 -2.2970 11.1114 20 7 6.4259 -3.5941 11.3019 21 14 7.3556 -1.2267 12.4001 22 1 6.3904 -0.2118 12.8937 23 1 7.8059 -2.0744 13.5330 24 1 8.5281 -0.5429 11.7976 25 6 5.4222 -0.5704 7.6283 26 6 5.0536 0.0451 6.4542 27 6 1.6429 -2.0853 1.4412 28 6 0.8515 -2.8064 0.3483 29 6 0.1582 -2.3913 1.6484 30 1 -0.3633 -1.0204 -0.1223 31 1 -0.3634 0.4043 0.9448 32 1 -0.3634 0.6161 -0.8226 33 1 2.0536 -0.7408 -3.2089 34 1 2.9292 -1.7197 3.5062 35 1 4.1972 1.0179 4.0561 36 1 3.3769 -2.5392 5.0099 37 1 4.0516 -3.6272 7.1058 38 1 6.7792 -3.9952 12.1114 39 1 5.9918 -0.0258 8.3669 40 1 5.3338 1.0719 6.2706 41 1 2.3621 -2.6724 2.0123 42 1 0.6104 -2.2432 -0.5532 43 1 1.0498 -3.8680 0.2006 44 1 -0.0993 -3.1800 2.3554 45 1 -0.5394 -1.5550 1.6018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493529304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:12 Heat of formation + Delta-G solvation = -80.483440 kcal Electronic energy + Delta-G solvation = -29017.037846 eV Core-core repulsion = 24773.886675 eV Total energy + Delta-G solvation = -4243.151171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.22598 -40.87837 -40.51826 -38.78737 -38.41401 -37.06276 -35.00045 -34.64369 -34.04722 -32.49686 -31.95594 -29.62183 -27.52032 -26.29011 -24.86713 -23.82779 -23.57074 -23.31475 -22.65374 -21.27405 -20.20426 -19.77439 -19.06837 -18.78423 -18.63108 -17.96461 -16.89882 -16.75722 -16.46855 -16.27351 -16.02776 -15.86880 -15.61053 -15.56977 -15.22535 -14.86165 -14.73790 -14.39786 -14.37665 -14.05708 -13.80113 -13.58213 -13.32343 -13.32126 -13.07709 -12.74666 -12.67661 -12.57535 -12.24137 -12.20527 -12.16389 -12.13720 -12.02777 -11.64074 -11.44682 -11.25048 -11.10446 -10.88540 -10.57995 -9.88860 -9.68320 -8.68813 -8.52085 -6.17962 -0.29670 0.59040 1.05262 1.08934 1.36113 1.46072 1.49893 1.51839 2.06160 2.15710 2.30171 2.85001 2.96805 3.18721 3.40523 3.44836 3.70361 3.81100 3.87494 3.94066 3.99543 4.05570 4.09542 4.19373 4.26558 4.32725 4.48175 4.60249 4.64160 4.66271 4.80563 4.84705 4.94009 4.98358 5.02720 5.13102 5.18898 5.20202 5.22608 5.32056 5.36747 5.53139 5.58050 5.64184 5.79887 5.97071 6.10287 6.21817 6.89167 6.92250 7.01922 7.69339 8.69792 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027275 B = 0.001851 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.343968 B =15124.910040 C =15645.187576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 H 0.129 0.871 4 C 0.471 3.529 5 O -0.526 6.526 6 O -0.506 6.506 7 N -0.565 5.565 8 C 0.561 3.439 9 O -0.584 6.584 10 C -0.248 4.248 11 C 0.024 3.976 12 C -0.172 4.172 13 C -0.036 4.036 14 C -0.207 4.207 15 C 0.131 3.869 16 O -0.219 6.219 17 C -0.416 4.416 18 H 0.105 0.895 19 C -0.019 4.019 20 N -0.913 5.913 21 Si 1.018 2.982 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.249 4.249 26 C -0.038 4.038 27 C 0.057 3.943 28 C -0.174 4.174 29 C -0.183 4.183 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.429 0.571 34 H 0.149 0.851 35 H 0.128 0.872 36 H 0.157 0.843 37 H 0.123 0.877 38 H 0.275 0.725 39 H 0.125 0.875 40 H 0.145 0.855 41 H 0.137 0.863 42 H 0.094 0.906 43 H 0.109 0.891 44 H 0.118 0.882 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.134 5.643 -24.272 28.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.034 3.966 3 H 0.146 0.854 4 C 0.313 3.687 5 O -0.414 6.414 6 O -0.319 6.319 7 N -0.296 5.296 8 C 0.355 3.645 9 O -0.466 6.466 10 C -0.268 4.268 11 C 0.005 3.995 12 C -0.173 4.173 13 C -0.054 4.054 14 C -0.226 4.226 15 C 0.079 3.921 16 O -0.124 6.124 17 C -0.492 4.492 18 H 0.122 0.878 19 C -0.218 4.218 20 N -0.550 5.550 21 Si 0.837 3.163 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.181 1.181 25 C -0.268 4.268 26 C -0.056 4.056 27 C -0.047 4.047 28 C -0.211 4.211 29 C -0.221 4.221 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.291 0.709 34 H 0.167 0.833 35 H 0.146 0.854 36 H 0.175 0.825 37 H 0.141 0.859 38 H 0.084 0.916 39 H 0.143 0.857 40 H 0.163 0.837 41 H 0.154 0.846 42 H 0.112 0.888 43 H 0.127 0.873 44 H 0.136 0.864 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.862 5.766 -23.829 28.164 hybrid contribution 1.054 -0.250 0.248 1.111 sum -12.808 5.515 -23.581 27.395 Atomic orbital electron populations 1.22563 0.89078 1.05344 1.05254 1.20624 0.98063 0.97624 0.80319 0.85378 1.23809 0.76887 0.82290 0.85763 1.90769 1.36312 1.26871 1.87494 1.84478 1.71926 1.59027 1.16517 1.47042 1.49297 1.12619 1.20619 1.18553 0.76629 0.84832 0.84464 1.90771 1.56425 1.20963 1.78466 1.22703 1.07545 1.02410 0.94185 1.22209 0.89009 0.98615 0.89701 1.18748 1.07296 0.95149 0.96105 1.21260 0.95766 0.93541 0.94787 1.20407 1.05643 1.01142 0.95388 1.20201 0.92640 0.92636 0.86660 1.83899 1.67821 1.38608 1.22023 1.21838 1.37807 0.92217 0.97318 0.87754 1.26615 0.97267 0.97897 0.99990 1.70141 1.44523 1.12145 1.28151 0.84651 0.78590 0.77112 0.75948 1.18074 1.19639 1.18150 1.21209 1.09065 0.95565 1.00963 1.21317 0.93500 0.99611 0.91146 1.21913 0.95823 0.81748 1.05171 1.23470 1.02784 1.01605 0.93261 1.23896 0.94214 1.04482 0.99546 0.89447 0.89937 0.88296 0.70873 0.83313 0.85423 0.82529 0.85887 0.91583 0.85711 0.83682 0.84590 0.88811 0.87296 0.86362 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 7.67 71.98 0.55 -1.14 16 2 C 0.14 2.39 3.07 44.25 0.14 2.52 16 3 H 0.13 2.51 6.91 -2.39 -0.02 2.50 16 4 C 0.47 8.13 5.86 71.24 0.42 8.54 16 5 O -0.53 -12.15 14.69 21.97 0.32 -11.83 16 6 O -0.51 -5.43 13.35 -51.34 -0.69 -6.12 16 7 N -0.57 -11.55 2.49 -783.31 -1.95 -13.50 16 8 C 0.56 14.66 7.59 86.33 0.65 15.32 16 9 O -0.58 -18.79 15.59 -4.42 -0.07 -18.86 16 10 C -0.25 -6.01 8.69 23.62 0.21 -5.81 16 11 C 0.02 0.66 9.45 23.82 0.23 0.88 16 12 C -0.17 -5.35 5.87 -20.13 -0.12 -5.46 16 13 C -0.04 -1.12 9.40 22.55 0.21 -0.91 16 14 C -0.21 -8.20 9.97 22.34 0.22 -7.98 16 15 C 0.13 6.20 6.66 22.72 0.15 6.35 16 16 O -0.22 -12.61 9.74 -20.31 -0.20 -12.80 16 17 C -0.42 -23.31 9.43 67.93 0.64 -22.67 16 18 H 0.11 5.33 5.29 -2.91 -0.02 5.31 16 19 C -0.02 -1.03 5.49 84.86 0.47 -0.57 16 20 N -0.91 -54.23 13.67 21.62 0.30 -53.93 16 21 Si 1.02 41.34 29.55 68.60 2.03 43.37 16 22 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 25 C -0.25 -10.37 9.11 22.34 0.20 -10.17 16 26 C -0.04 -1.27 9.78 22.55 0.22 -1.05 16 27 C 0.06 0.94 5.08 44.99 0.23 1.17 16 28 C -0.17 -2.32 7.68 30.62 0.24 -2.09 16 29 C -0.18 -2.06 9.59 30.62 0.29 -1.77 16 30 H 0.09 0.78 3.95 -2.38 -0.01 0.77 16 31 H 0.08 0.85 7.75 -2.39 -0.02 0.83 16 32 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.43 1.17 9.10 -74.06 -0.67 0.49 16 34 H 0.15 2.94 4.32 -2.91 -0.01 2.92 16 35 H 0.13 3.42 7.53 -2.91 -0.02 3.39 16 36 H 0.16 3.62 6.16 -2.91 -0.02 3.60 16 37 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.28 14.98 8.31 -92.70 -0.77 14.21 16 39 H 0.13 5.25 5.70 -2.91 -0.02 5.24 16 40 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 41 H 0.14 2.17 6.60 -2.39 -0.02 2.15 16 42 H 0.09 1.25 3.87 -2.39 -0.01 1.25 16 43 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 44 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.11 1.12 5.66 -2.38 -0.01 1.11 16 Total: -1.00 -76.26 372.48 5.09 -71.17 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.40 Total: 27.31 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 4.95 Total: -24.81 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: -1.66 Total: -67.43 kcal Atomic # 8 Polarization: -48.97 SS G_CDS: -0.63 Total: -49.60 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -76.26 5.09 -71.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493529304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.316 kcal (2) G-P(sol) polarization free energy of solvation -76.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds