Wall clock time and date at job start Wed Apr 1 2020 03:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45196 * 109.47139 * 2 1 4 4 C 1.34638 * 117.00102 * 180.02562 * 3 2 1 5 5 O 1.21513 * 119.99773 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00255 * 179.97438 * 4 3 2 7 7 C 1.46923 * 120.63030 * 359.97438 * 6 4 3 8 8 C 1.53191 * 108.77890 * 126.40949 * 7 6 4 9 9 C 1.53040 * 109.34000 * 54.61990 * 8 7 6 10 10 C 1.53045 * 109.53789 * 298.68410 * 9 8 7 11 11 H 1.08996 * 109.49756 * 301.34870 * 10 9 8 12 12 C 1.50698 * 109.49924 * 181.28195 * 10 9 8 13 13 O 1.20822 * 119.99804 * 0.06657 * 12 10 9 14 14 O 1.34231 * 120.00053 * 180.02562 * 12 10 9 15 15 C 1.45198 * 116.99983 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.46884 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 18 18 S 1.81002 * 109.47152 * 179.97438 * 17 16 15 19 19 C 1.76198 * 100.00092 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99945 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00251 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99707 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00286 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47120 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47665 * 119.99602 * 23 21 19 26 26 H 1.48503 * 109.46798 * 239.99988 * 23 21 19 27 27 C 1.46927 * 120.63309 * 179.97438 * 6 4 3 28 28 H 1.08994 * 109.47209 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46833 * 300.00128 * 1 2 3 30 30 H 1.08994 * 109.46867 * 59.99972 * 1 2 3 31 31 H 1.08999 * 109.46833 * 239.99872 * 2 1 3 32 32 H 1.08998 * 109.46903 * 119.99521 * 2 1 3 33 33 H 1.09001 * 109.58918 * 246.19841 * 7 6 4 34 34 H 1.08999 * 109.58861 * 6.47682 * 7 6 4 35 35 H 1.09003 * 109.49699 * 174.58166 * 8 7 6 36 36 H 1.08994 * 109.49784 * 294.64926 * 8 7 6 37 37 H 1.08996 * 109.48992 * 178.65082 * 9 8 7 38 38 H 1.09002 * 109.43314 * 58.68413 * 9 8 7 39 39 H 1.09002 * 109.47379 * 59.99613 * 15 14 12 40 40 H 1.09001 * 109.46782 * 299.99696 * 15 14 12 41 41 H 1.09001 * 109.47194 * 299.99482 * 16 15 14 42 42 H 1.08992 * 109.47399 * 59.99654 * 16 15 14 43 43 H 1.09001 * 109.47109 * 299.99380 * 17 16 15 44 44 H 1.09002 * 109.47508 * 59.99571 * 17 16 15 45 45 H 0.96996 * 119.99880 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.58238 * 113.80075 * 27 6 4 47 47 H 1.09002 * 109.58694 * 353.37973 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0015 6 7 3.8640 2.7907 -0.0011 7 6 2.9819 3.9657 -0.0017 8 6 3.3742 4.8775 1.1652 9 6 4.8648 5.2106 1.0690 10 6 5.6846 3.9219 1.1654 11 1 5.4651 3.4207 2.1081 12 6 7.1532 4.2539 1.1023 13 8 7.5084 5.4036 0.9928 14 8 8.0666 3.2726 1.1686 15 6 9.4627 3.6660 1.1022 16 6 10.3481 2.4215 1.1931 17 6 11.8192 2.8361 1.1238 18 16 12.8667 1.3640 1.2321 19 6 14.4584 2.1127 1.1296 20 1 14.5455 3.1847 1.0314 21 6 15.6002 1.3248 1.1740 22 7 15.4939 0.0182 1.2932 23 14 17.2876 2.1187 1.0661 24 1 17.1351 3.5903 0.9385 25 1 18.0616 1.8055 2.2942 26 1 18.0077 1.5913 -0.1208 27 6 5.3184 2.9993 -0.0011 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0940 4.5063 -0.9415 34 1 1.9465 3.6454 0.1143 35 1 2.7921 5.7979 1.1193 36 1 3.1754 4.3678 2.1079 37 1 5.1414 5.8787 1.8846 38 1 5.0665 5.6988 0.1156 39 1 9.6914 4.3355 1.9315 40 1 9.6513 4.1785 0.1589 41 1 10.1594 1.9094 2.1366 42 1 10.1195 1.7517 0.3642 43 1 12.0083 3.3484 0.1805 44 1 12.0475 3.5058 1.9530 45 1 16.2919 -0.5324 1.3246 46 1 5.6212 3.4609 -0.9409 47 1 5.8249 2.0414 0.1178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496271971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:42 Heat of formation + Delta-G solvation = -188.835565 kcal Electronic energy + Delta-G solvation = -27330.295641 eV Core-core repulsion = 23217.889921 eV Total energy + Delta-G solvation = -4112.405720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25302 -40.54986 -38.58664 -36.91573 -36.53954 -33.71720 -33.43376 -32.43998 -32.06627 -31.77034 -26.88323 -26.17528 -25.56380 -24.73933 -23.46983 -22.34710 -21.34962 -21.04598 -20.13834 -18.63512 -17.72761 -17.38821 -17.34653 -17.08345 -16.72779 -16.41700 -15.41649 -15.25395 -14.90632 -14.81630 -14.59431 -14.33509 -14.26127 -13.84725 -13.68784 -13.53503 -13.25316 -13.11357 -12.78873 -12.63160 -12.35002 -12.13274 -12.08281 -11.96226 -11.54597 -11.49930 -11.36415 -11.16037 -11.13359 -11.00278 -10.90843 -10.90259 -10.83570 -10.69417 -10.52688 -10.29576 -9.62180 -9.26636 -9.08006 -8.34105 -6.55654 -6.24327 -3.95254 1.59493 2.04910 2.43626 2.50921 3.20901 3.22264 3.29963 3.37978 3.54675 4.11297 4.20154 4.25066 4.31402 4.42780 4.52675 4.55572 4.65595 4.77719 4.87288 4.90424 4.99681 5.10045 5.12774 5.14358 5.17184 5.23280 5.30508 5.33452 5.34518 5.38830 5.43201 5.48281 5.51648 5.62229 5.77502 5.79784 5.84466 5.93404 5.98207 6.16736 6.40665 6.45638 6.67787 6.87268 7.59765 7.60663 7.89328 8.35523 9.22110 10.83893 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017604 B = 0.001717 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.125112 B =16301.052096 C =17722.557995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 O -0.370 6.370 4 C 0.651 3.349 5 O -0.564 6.564 6 N -0.594 5.594 7 C 0.108 3.892 8 C -0.134 4.134 9 C -0.106 4.106 10 C -0.096 4.096 11 H 0.115 0.885 12 C 0.468 3.532 13 O -0.504 6.504 14 O -0.351 6.351 15 C 0.072 3.928 16 C -0.099 4.099 17 C -0.114 4.114 18 S -0.123 6.123 19 C -0.518 4.518 20 H 0.074 0.926 21 C 0.071 3.929 22 N -0.869 5.869 23 Si 0.920 3.080 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.137 3.863 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.267 0.733 46 H 0.081 0.919 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.244 7.320 -1.948 34.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.006 3.994 3 O -0.285 6.285 4 C 0.406 3.594 5 O -0.452 6.452 6 N -0.335 5.335 7 C -0.014 4.014 8 C -0.172 4.172 9 C -0.144 4.144 10 C -0.116 4.116 11 H 0.133 0.867 12 C 0.310 3.690 13 O -0.392 6.392 14 O -0.268 6.268 15 C -0.002 4.002 16 C -0.137 4.137 17 C -0.263 4.263 18 S 0.105 5.895 19 C -0.667 4.667 20 H 0.092 0.908 21 C -0.138 4.138 22 N -0.504 5.504 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 C 0.016 3.984 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -33.102 6.008 -1.875 33.695 hybrid contribution 1.642 1.813 -0.126 2.449 sum -31.460 7.820 -2.000 32.479 Atomic orbital electron populations 1.21828 0.92472 1.03194 1.03461 1.22994 0.94801 0.78545 1.03056 1.86206 1.21888 1.33368 1.86992 1.17939 0.81308 0.83828 0.76340 1.91048 1.59714 1.39160 1.55281 1.46804 1.06889 1.03349 1.76456 1.21823 0.94497 0.85946 0.99131 1.21953 0.96059 1.00212 0.99004 1.21468 0.93473 0.95001 1.04458 1.21456 0.88082 0.99447 1.02649 0.86730 1.23280 0.89106 0.83826 0.72837 1.90676 1.82081 1.21629 1.44771 1.86506 1.18362 1.39157 1.82742 1.23307 0.75554 0.98828 1.02555 1.21292 0.92194 0.95833 1.04382 1.23180 0.95998 1.03816 1.03299 1.84687 1.00833 1.07858 1.96146 1.22744 0.90433 0.95436 1.58038 0.90795 1.25023 0.99374 0.94842 0.94549 1.70031 1.29753 1.03775 1.46888 0.86092 0.82088 0.79294 0.77918 1.19590 1.20545 1.20547 1.21523 0.78245 1.01629 0.97046 0.89897 0.91477 0.91496 0.91019 0.90993 0.90771 0.88613 0.89562 0.90991 0.90155 0.90394 0.91106 0.91055 0.90311 0.90243 0.91739 0.91760 0.92299 0.90114 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 10.29 37.16 0.38 -0.22 16 2 C 0.08 0.55 6.19 37.16 0.23 0.78 16 3 O -0.37 -3.23 8.86 -40.32 -0.36 -3.59 16 4 C 0.65 7.02 8.43 54.05 0.46 7.48 16 5 O -0.56 -8.03 15.55 -19.28 -0.30 -8.33 16 6 N -0.59 -5.07 2.97 -178.58 -0.53 -5.60 16 7 C 0.11 0.59 6.45 -3.71 -0.02 0.57 16 8 C -0.13 -0.64 6.08 -26.61 -0.16 -0.80 16 9 C -0.11 -0.73 4.46 -26.69 -0.12 -0.85 16 10 C -0.10 -0.83 2.78 -91.66 -0.25 -1.09 16 11 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 12 C 0.47 5.65 7.26 36.00 0.26 5.91 16 13 O -0.50 -7.24 15.73 -18.75 -0.29 -7.53 16 14 O -0.35 -4.75 10.15 -39.26 -0.40 -5.15 16 15 C 0.07 1.04 5.47 37.16 0.20 1.24 16 16 C -0.10 -1.63 5.60 -26.73 -0.15 -1.78 16 17 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 18 S -0.12 -3.23 21.44 -107.50 -2.30 -5.54 16 19 C -0.52 -14.90 9.50 30.94 0.29 -14.60 16 20 H 0.07 2.06 7.80 -52.49 -0.41 1.65 16 21 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 22 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 23 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.14 1.24 5.64 -3.72 -0.02 1.22 16 28 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.47 6.93 -51.93 -0.36 0.11 16 35 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 38 H 0.08 0.56 8.13 -51.93 -0.42 0.13 16 39 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 40 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 41 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 44 H 0.06 1.27 8.14 -51.91 -0.42 0.84 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.11 1.26 7.00 -51.93 -0.36 0.89 16 LS Contribution 404.58 15.07 6.10 6.10 Total: -1.00 -34.81 404.58 -9.04 -43.85 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.87 Total: -3.20 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 1.21 Total: -2.29 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.20 Total: -30.89 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -1.35 Total: -24.60 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -2.30 Total: -5.54 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.81 -9.04 -43.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496271971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.987 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds