Wall clock time and date at job start Wed Apr 1 2020 03:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45196 * 109.47139 * 2 1 4 4 C 1.34638 * 117.00102 * 180.02562 * 3 2 1 5 5 O 1.21513 * 119.99773 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00255 * 179.97438 * 4 3 2 7 7 C 1.46923 * 120.63030 * 359.97438 * 6 4 3 8 8 C 1.53191 * 108.77890 * 126.40949 * 7 6 4 9 9 C 1.53040 * 109.34000 * 54.61990 * 8 7 6 10 10 C 1.53045 * 109.53789 * 298.68410 * 9 8 7 11 11 H 1.08996 * 109.49756 * 301.34870 * 10 9 8 12 12 C 1.50698 * 109.49924 * 181.28195 * 10 9 8 13 13 O 1.20822 * 119.99804 * 0.06657 * 12 10 9 14 14 O 1.34231 * 120.00053 * 180.02562 * 12 10 9 15 15 C 1.45198 * 116.99983 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.46884 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 18 18 S 1.81002 * 109.47152 * 179.97438 * 17 16 15 19 19 C 1.76198 * 100.00092 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99945 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00251 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99707 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00286 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47120 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47665 * 119.99602 * 23 21 19 26 26 H 1.48503 * 109.46798 * 239.99988 * 23 21 19 27 27 C 1.46927 * 120.63309 * 179.97438 * 6 4 3 28 28 H 1.08994 * 109.47209 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46833 * 300.00128 * 1 2 3 30 30 H 1.08994 * 109.46867 * 59.99972 * 1 2 3 31 31 H 1.08999 * 109.46833 * 239.99872 * 2 1 3 32 32 H 1.08998 * 109.46903 * 119.99521 * 2 1 3 33 33 H 1.09001 * 109.58918 * 246.19841 * 7 6 4 34 34 H 1.08999 * 109.58861 * 6.47682 * 7 6 4 35 35 H 1.09003 * 109.49699 * 174.58166 * 8 7 6 36 36 H 1.08994 * 109.49784 * 294.64926 * 8 7 6 37 37 H 1.08996 * 109.48992 * 178.65082 * 9 8 7 38 38 H 1.09002 * 109.43314 * 58.68413 * 9 8 7 39 39 H 1.09002 * 109.47379 * 59.99613 * 15 14 12 40 40 H 1.09001 * 109.46782 * 299.99696 * 15 14 12 41 41 H 1.09001 * 109.47194 * 299.99482 * 16 15 14 42 42 H 1.08992 * 109.47399 * 59.99654 * 16 15 14 43 43 H 1.09001 * 109.47109 * 299.99380 * 17 16 15 44 44 H 1.09002 * 109.47508 * 59.99571 * 17 16 15 45 45 H 0.96996 * 119.99880 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.58238 * 113.80075 * 27 6 4 47 47 H 1.09002 * 109.58694 * 353.37973 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0015 6 7 3.8640 2.7907 -0.0011 7 6 2.9819 3.9657 -0.0017 8 6 3.3742 4.8775 1.1652 9 6 4.8648 5.2106 1.0690 10 6 5.6846 3.9219 1.1654 11 1 5.4651 3.4207 2.1081 12 6 7.1532 4.2539 1.1023 13 8 7.5084 5.4036 0.9928 14 8 8.0666 3.2726 1.1686 15 6 9.4627 3.6660 1.1022 16 6 10.3481 2.4215 1.1931 17 6 11.8192 2.8361 1.1238 18 16 12.8667 1.3640 1.2321 19 6 14.4584 2.1127 1.1296 20 1 14.5455 3.1847 1.0314 21 6 15.6002 1.3248 1.1740 22 7 15.4939 0.0182 1.2932 23 14 17.2876 2.1187 1.0661 24 1 17.1351 3.5903 0.9385 25 1 18.0616 1.8055 2.2942 26 1 18.0077 1.5913 -0.1208 27 6 5.3184 2.9993 -0.0011 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0940 4.5063 -0.9415 34 1 1.9465 3.6454 0.1143 35 1 2.7921 5.7979 1.1193 36 1 3.1754 4.3678 2.1079 37 1 5.1414 5.8787 1.8846 38 1 5.0665 5.6988 0.1156 39 1 9.6914 4.3355 1.9315 40 1 9.6513 4.1785 0.1589 41 1 10.1594 1.9094 2.1366 42 1 10.1195 1.7517 0.3642 43 1 12.0083 3.3484 0.1805 44 1 12.0475 3.5058 1.9530 45 1 16.2919 -0.5324 1.3246 46 1 5.6212 3.4609 -0.9409 47 1 5.8249 2.0414 0.1178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496271971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:42 Heat of formation + Delta-G solvation = -208.752650 kcal Electronic energy + Delta-G solvation = -27331.159311 eV Core-core repulsion = 23217.889921 eV Total energy + Delta-G solvation = -4113.269390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.08350 -41.46976 -39.29654 -37.91575 -37.40875 -34.96721 -34.60078 -34.27789 -32.62857 -32.30185 -28.31010 -27.55023 -26.81774 -25.60690 -23.97400 -23.09174 -22.68292 -21.88432 -20.85604 -19.62035 -19.31263 -18.59035 -18.18003 -17.87844 -17.69174 -17.38637 -16.91174 -16.36592 -16.16846 -15.81880 -15.52335 -15.39424 -15.12544 -14.95722 -14.46232 -14.35335 -14.23190 -14.04052 -13.81030 -13.72640 -13.47597 -13.15149 -12.97157 -12.90976 -12.69490 -12.62478 -12.50094 -12.41363 -12.39907 -12.13386 -12.06034 -11.81708 -11.72661 -11.55763 -11.53324 -11.52608 -11.37214 -11.17070 -10.36693 -9.94796 -8.69743 -8.39216 -6.16153 0.83322 1.13030 1.27162 1.38137 1.42320 1.52427 1.64104 1.83148 2.25940 2.78351 2.95430 3.26404 3.42030 3.53362 3.61729 3.83069 3.94203 3.96141 4.02492 4.04703 4.08059 4.12648 4.14990 4.31305 4.34477 4.41995 4.47874 4.51175 4.61083 4.66174 4.68802 4.76493 4.84982 4.96022 4.99499 5.01800 5.09133 5.10742 5.15276 5.29729 5.32308 5.38855 5.39227 5.42691 6.15704 6.16885 6.59133 7.03242 7.11498 8.70481 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017604 B = 0.001717 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.125112 B =16301.052096 C =17722.557995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 O -0.364 6.364 4 C 0.647 3.353 5 O -0.608 6.608 6 N -0.589 5.589 7 C 0.104 3.896 8 C -0.124 4.124 9 C -0.103 4.103 10 C -0.087 4.087 11 H 0.122 0.878 12 C 0.470 3.530 13 O -0.525 6.525 14 O -0.358 6.358 15 C 0.080 3.920 16 C -0.088 4.088 17 C -0.091 4.091 18 S -0.188 6.188 19 C -0.540 4.540 20 H 0.075 0.925 21 C 0.015 3.985 22 N -0.907 5.907 23 Si 0.996 3.004 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.139 3.861 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.272 0.728 46 H 0.090 0.910 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.757 9.305 -2.059 36.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.002 4.002 3 O -0.278 6.278 4 C 0.402 3.598 5 O -0.499 6.499 6 N -0.329 5.329 7 C -0.017 4.017 8 C -0.162 4.162 9 C -0.141 4.141 10 C -0.107 4.107 11 H 0.139 0.861 12 C 0.313 3.687 13 O -0.414 6.414 14 O -0.275 6.275 15 C 0.005 3.995 16 C -0.126 4.126 17 C -0.239 4.239 18 S 0.040 5.960 19 C -0.688 4.688 20 H 0.093 0.907 21 C -0.190 4.190 22 N -0.544 5.544 23 Si 0.818 3.182 24 H -0.186 1.186 25 H -0.196 1.196 26 H -0.197 1.197 27 C 0.017 3.983 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.108 0.892 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -34.660 8.017 -1.984 35.630 hybrid contribution 1.987 1.207 -0.096 2.327 sum -32.673 9.224 -2.080 34.013 Atomic orbital electron populations 1.21828 0.89874 1.04464 1.03894 1.23237 0.96731 0.77741 1.02468 1.86227 1.20550 1.34391 1.86618 1.18183 0.81680 0.83998 0.75976 1.91016 1.60753 1.40754 1.57365 1.46911 1.06976 1.03608 1.75410 1.22093 0.94365 0.84891 1.00318 1.21926 0.94612 1.01120 0.98559 1.21496 0.94506 0.93662 1.04398 1.21517 0.85824 1.00590 1.02733 0.86063 1.23904 0.89891 0.83182 0.71720 1.90667 1.82505 1.22374 1.45832 1.86508 1.18071 1.39939 1.82972 1.23049 0.76021 0.97307 1.03115 1.21113 0.90405 0.96868 1.04257 1.23061 0.96606 1.00545 1.03727 1.84693 1.02131 1.12793 1.96371 1.23094 0.91610 0.95674 1.58411 0.90701 1.26082 1.03804 0.95359 0.93719 1.70159 1.31186 1.05375 1.47637 0.84940 0.76404 0.78563 0.78297 1.18628 1.19648 1.19671 1.21421 0.78690 1.00561 0.97635 0.88207 0.90988 0.91023 0.91689 0.91667 0.89243 0.87629 0.86954 0.91006 0.90339 0.90400 0.90582 0.90480 0.90468 0.90456 0.91208 0.91219 0.91904 0.89212 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 10.29 71.98 0.74 -0.17 16 2 C 0.07 0.97 6.19 71.98 0.45 1.42 16 3 O -0.36 -6.08 8.86 -55.47 -0.49 -6.57 16 4 C 0.65 13.85 8.43 129.79 1.09 14.94 16 5 O -0.61 -17.91 15.55 19.80 0.31 -17.61 16 6 N -0.59 -9.45 2.97 -949.31 -2.82 -12.27 16 7 C 0.10 0.88 6.45 86.36 0.56 1.43 16 8 C -0.12 -0.82 6.08 30.67 0.19 -0.63 16 9 C -0.10 -1.19 4.46 30.62 0.14 -1.05 16 10 C -0.09 -1.40 2.78 -11.47 -0.03 -1.44 16 11 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 12 C 0.47 10.91 7.26 71.24 0.52 11.43 16 13 O -0.53 -14.47 15.73 21.98 0.35 -14.13 16 14 O -0.36 -9.49 10.15 -51.42 -0.52 -10.01 16 15 C 0.08 2.23 5.47 71.98 0.39 2.62 16 16 C -0.09 -2.88 5.60 30.59 0.17 -2.71 16 17 C -0.09 -3.62 5.67 71.98 0.41 -3.21 16 18 S -0.19 -10.09 21.44 -56.49 -1.21 -11.31 16 19 C -0.54 -31.35 9.50 67.95 0.65 -30.70 16 20 H 0.07 4.18 7.80 -2.91 -0.02 4.15 16 21 C 0.02 0.88 5.49 84.86 0.47 1.34 16 22 N -0.91 -55.08 13.22 21.65 0.29 -54.79 16 23 Si 1.00 44.17 29.55 68.60 2.03 46.19 16 24 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 C 0.14 2.44 5.64 86.35 0.49 2.93 16 28 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 34 H 0.11 0.74 6.93 -2.39 -0.02 0.72 16 35 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.08 0.98 8.07 -2.39 -0.02 0.96 16 38 H 0.08 0.93 8.13 -2.39 -0.02 0.91 16 39 H 0.08 2.05 8.13 -2.39 -0.02 2.03 16 40 H 0.08 2.07 8.13 -2.39 -0.02 2.05 16 41 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 45 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.09 2.06 7.00 -2.39 -0.02 2.05 16 Total: -1.00 -76.35 404.58 5.08 -71.26 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.94 Total: 13.02 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 6.22 Total: -3.79 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -2.54 Total: -67.06 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -0.36 Total: -48.32 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -10.09 SS G_CDS: -1.21 Total: -11.31 kcal Total: -76.35 5.08 -71.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496271971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.489 kcal (2) G-P(sol) polarization free energy of solvation -76.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds