Wall clock time and date at job start Wed Apr 1 2020 03:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46977 * 2 1 4 4 C 1.34636 * 116.99855 * 180.02562 * 3 2 1 5 5 O 1.21509 * 120.00384 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00274 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63395 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 126.29715 * 7 6 4 9 9 C 1.53346 * 109.14901 * 54.57640 * 8 7 6 10 10 C 1.50701 * 109.42092 * 178.67337 * 9 8 7 11 11 O 1.20822 * 120.00141 * 120.12317 * 10 9 8 12 12 O 1.34234 * 119.99950 * 300.13398 * 10 9 8 13 13 C 1.45198 * 116.99842 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46905 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47110 * 179.97438 * 14 13 12 16 16 S 1.81005 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.76202 * 100.00070 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99876 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99950 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99876 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99764 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47352 * 89.99871 * 21 19 17 23 23 H 1.48507 * 109.47194 * 209.99998 * 21 19 17 24 24 H 1.48498 * 109.47610 * 329.99920 * 21 19 17 25 25 C 1.53034 * 109.61010 * 298.71225 * 9 8 7 26 26 C 1.46933 * 120.62602 * 359.97266 * 6 4 3 27 27 H 1.09003 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47174 * 299.99222 * 1 2 3 29 29 H 1.08998 * 109.47564 * 59.99961 * 1 2 3 30 30 H 1.09002 * 109.46530 * 240.00451 * 2 1 3 31 31 H 1.08996 * 109.47037 * 120.00579 * 2 1 3 32 32 H 1.09002 * 109.58751 * 246.15665 * 7 6 4 33 33 H 1.08996 * 109.58750 * 6.43850 * 7 6 4 34 34 H 1.08997 * 109.49914 * 174.65962 * 8 7 6 35 35 H 1.09002 * 109.49585 * 294.75599 * 8 7 6 36 36 H 1.09001 * 109.42242 * 58.75065 * 9 8 7 37 37 H 1.09004 * 109.46883 * 299.99668 * 13 12 10 38 38 H 1.08994 * 109.47278 * 59.99706 * 13 12 10 39 39 H 1.08994 * 109.47542 * 300.00189 * 14 13 12 40 40 H 1.09004 * 109.47172 * 59.99786 * 14 13 12 41 41 H 1.08995 * 109.47767 * 300.00042 * 15 14 13 42 42 H 1.09004 * 109.46729 * 60.00187 * 15 14 13 43 43 H 0.97003 * 119.99851 * 180.02562 * 20 19 17 44 44 H 1.08994 * 109.50232 * 301.42239 * 25 9 8 45 45 H 1.09007 * 109.52628 * 181.33900 * 25 9 8 46 46 H 1.08994 * 109.58580 * 353.42544 * 26 6 4 47 47 H 1.09006 * 109.57831 * 113.70037 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0890 0.5818 -0.0015 6 7 3.8639 2.7908 0.0000 7 6 5.3183 2.9993 -0.0001 8 6 5.6874 3.9196 -1.1679 9 6 4.8644 5.2098 -1.0712 10 6 5.2464 6.1335 -2.1990 11 8 4.4124 6.4888 -2.9978 12 8 6.5133 6.5615 -2.3162 13 6 6.8092 7.4487 -3.4268 14 6 8.2911 7.8279 -3.3958 15 6 8.6031 8.7623 -4.5664 16 16 10.3562 9.2114 -4.5292 17 6 10.4335 10.2598 -5.9434 18 1 9.5447 10.4431 -6.5289 19 6 11.6369 10.8490 -6.3055 20 7 12.7204 10.6243 -5.5927 21 14 11.7190 11.9598 -7.8050 22 1 11.4405 13.3608 -7.3992 23 1 13.0740 11.8789 -8.4074 24 1 10.7078 11.5227 -8.8009 25 6 3.3739 4.8767 -1.1676 26 6 2.9817 3.9658 0.0005 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.6211 3.4617 0.9394 33 1 5.8248 2.0412 -0.1156 34 1 6.7501 4.1575 -1.1217 35 1 5.4671 3.4178 -2.1101 36 1 5.0664 5.6980 -0.1177 37 1 6.5826 6.9435 -4.3658 38 1 6.2021 8.3501 -3.3436 39 1 8.5173 8.3331 -2.4569 40 1 8.8986 6.9266 -3.4788 41 1 8.3771 8.2567 -5.5052 42 1 7.9957 9.6635 -4.4837 43 1 13.5614 11.0364 -5.8456 44 1 3.1753 4.3662 -2.1099 45 1 2.7912 5.7969 -1.1226 46 1 1.9466 3.6455 -0.1172 47 1 3.0926 4.5054 0.9411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497227259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:37 Heat of formation + Delta-G solvation = -210.276871 kcal Electronic energy + Delta-G solvation = -27043.797969 eV Core-core repulsion = 22930.462484 eV Total energy + Delta-G solvation = -4113.335485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.99114 -41.46088 -39.25912 -37.88767 -37.36985 -34.97610 -34.60244 -34.29497 -32.53813 -32.05847 -28.59244 -27.78162 -26.90333 -24.71998 -24.15334 -23.25896 -22.69838 -21.84731 -20.86571 -19.59159 -19.21310 -18.72174 -18.09247 -17.83429 -17.68660 -17.40675 -16.90274 -16.17089 -16.07655 -15.93365 -15.69011 -15.14090 -15.06500 -14.86258 -14.58366 -14.34386 -14.23581 -13.84159 -13.78398 -13.64062 -13.36202 -13.19125 -13.04072 -12.95017 -12.87767 -12.62360 -12.52029 -12.40209 -12.39101 -12.33747 -11.96088 -11.83145 -11.63603 -11.55854 -11.52691 -11.49833 -11.32079 -11.15356 -10.36638 -9.89479 -8.68314 -8.38670 -6.15097 1.06037 1.13011 1.27505 1.39294 1.43078 1.52004 1.66540 1.85997 2.26656 2.81343 2.96101 3.27021 3.42099 3.61521 3.65673 3.84727 3.93570 3.98526 4.02999 4.07704 4.11216 4.16114 4.24303 4.27949 4.32059 4.36455 4.49091 4.59544 4.65460 4.67385 4.69602 4.77405 4.81210 4.93233 4.93979 5.01857 5.03919 5.13411 5.14900 5.20261 5.38302 5.39324 5.41910 5.46339 6.17115 6.18877 6.66995 7.04051 7.14349 8.70666 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.033661 B = 0.001443 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.627745 B =19395.886184 C =19711.893225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 O -0.370 6.370 4 C 0.645 3.355 5 O -0.609 6.609 6 N -0.594 5.594 7 C 0.130 3.870 8 C -0.122 4.122 9 C -0.074 4.074 10 C 0.463 3.537 11 O -0.539 6.539 12 O -0.353 6.353 13 C 0.080 3.920 14 C -0.085 4.085 15 C -0.093 4.093 16 S -0.183 6.183 17 C -0.543 4.543 18 H 0.073 0.927 19 C 0.018 3.982 20 N -0.906 5.906 21 Si 0.993 3.007 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.264 1.264 25 C -0.115 4.115 26 C 0.117 3.883 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.145 0.855 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.272 0.728 44 H 0.057 0.943 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.188 -17.917 15.798 34.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.000 4.000 3 O -0.284 6.284 4 C 0.400 3.600 5 O -0.501 6.501 6 N -0.334 5.334 7 C 0.009 3.991 8 C -0.160 4.160 9 C -0.092 4.092 10 C 0.308 3.692 11 O -0.429 6.429 12 O -0.270 6.270 13 C 0.005 3.995 14 C -0.124 4.124 15 C -0.242 4.242 16 S 0.046 5.954 17 C -0.690 4.690 18 H 0.091 0.909 19 C -0.187 4.187 20 N -0.542 5.542 21 Si 0.815 3.185 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.189 1.189 25 C -0.153 4.153 26 C -0.004 4.004 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.163 0.837 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.115 0.885 46 H 0.120 0.880 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.236 -18.407 16.284 34.517 hybrid contribution -0.492 1.011 -2.194 2.465 sum -24.729 -17.396 14.090 33.357 Atomic orbital electron populations 1.21836 0.90202 1.04451 1.03754 1.23201 0.96561 0.77791 1.02459 1.86238 1.21108 1.34396 1.86645 1.18246 0.81498 0.84274 0.76009 1.90970 1.60668 1.40679 1.57825 1.47162 1.08217 1.02993 1.75043 1.21757 0.76942 1.00932 0.99470 1.21982 1.01563 0.93256 0.99200 1.21282 0.97300 0.94126 0.96535 1.24378 0.79688 0.79044 0.86130 1.90665 1.51640 1.56653 1.43924 1.86471 1.30651 1.60206 1.49636 1.22996 0.96378 0.92636 0.87516 1.21097 0.93605 0.99551 0.98115 1.23080 0.98883 1.01363 1.00858 1.84608 1.08029 1.62501 1.40297 1.23062 0.98655 1.33610 1.13703 0.90861 1.26029 0.94133 0.97833 1.00721 1.70139 1.00534 1.43330 1.40220 0.85033 0.78032 0.78141 0.77320 1.19230 1.19882 1.18854 1.21823 0.93183 1.01097 0.99236 1.21922 0.94543 0.84693 0.99245 0.88098 0.90965 0.91442 0.91872 0.91283 0.87423 0.89321 0.87434 0.92401 0.83700 0.91286 0.90844 0.90017 0.90262 0.91561 0.91350 0.91884 0.92419 0.88529 0.87987 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 71.98 0.74 -0.18 16 2 C 0.07 0.93 6.19 71.98 0.45 1.38 16 3 O -0.37 -6.07 8.86 -55.46 -0.49 -6.56 16 4 C 0.64 12.76 8.43 129.79 1.09 13.85 16 5 O -0.61 -16.08 15.54 19.81 0.31 -15.77 16 6 N -0.59 -8.39 2.97 -949.17 -2.82 -11.22 16 7 C 0.13 1.53 6.42 86.36 0.55 2.09 16 8 C -0.12 -1.54 5.33 30.78 0.16 -1.37 16 9 C -0.07 -0.94 2.59 -11.41 -0.03 -0.97 16 10 C 0.46 10.01 7.26 71.24 0.52 10.53 16 11 O -0.54 -15.06 15.73 21.97 0.35 -14.71 16 12 O -0.35 -8.36 10.10 -51.45 -0.52 -8.88 16 13 C 0.08 2.12 5.47 71.98 0.39 2.52 16 14 C -0.09 -2.61 5.60 30.59 0.17 -2.44 16 15 C -0.09 -3.61 5.67 71.98 0.41 -3.20 16 16 S -0.18 -9.53 21.44 -56.49 -1.21 -10.75 16 17 C -0.54 -31.04 9.50 67.95 0.65 -30.39 16 18 H 0.07 4.04 7.80 -2.91 -0.02 4.02 16 19 C 0.02 1.02 5.49 84.86 0.47 1.49 16 20 N -0.91 -54.10 13.22 21.65 0.29 -53.82 16 21 Si 0.99 43.58 29.55 68.60 2.03 45.60 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 25 C -0.12 -1.37 4.66 30.68 0.14 -1.22 16 26 C 0.12 1.04 6.45 86.37 0.56 1.60 16 27 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 1.37 7.00 -2.39 -0.02 1.35 16 34 H 0.11 1.23 8.09 -2.39 -0.02 1.21 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.85 8.13 -2.38 -0.02 1.83 16 38 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 39 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 41 H 0.07 2.54 8.14 -2.40 -0.02 2.52 16 42 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 44 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 45 H 0.10 1.06 8.07 -2.38 -0.02 1.04 16 46 H 0.10 0.88 6.93 -2.39 -0.02 0.87 16 47 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 Total: -1.00 -76.24 404.52 5.14 -71.10 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.94 Total: 11.33 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 6.27 Total: -6.32 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -2.54 Total: -65.03 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -0.36 Total: -45.93 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -9.53 SS G_CDS: -1.21 Total: -10.75 kcal Total: -76.24 5.14 -71.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497227259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.175 kcal (2) G-P(sol) polarization free energy of solvation -76.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds