Wall clock time and date at job start Wed Apr 1 2020 03:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.46957 * 299.99389 * 5 3 2 7 7 N 1.46504 * 109.46911 * 179.97438 * 5 3 2 8 8 C 1.34777 * 120.00347 * 84.99885 * 7 5 3 9 9 O 1.21283 * 119.99348 * 359.97438 * 8 7 5 10 10 C 1.50692 * 120.00201 * 179.97438 * 8 7 5 11 11 S 1.81006 * 109.47091 * 179.97438 * 10 8 7 12 12 C 1.76201 * 100.00030 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00049 * 359.97438 * 12 11 10 14 14 C 1.38795 * 120.00035 * 180.02562 * 12 11 10 15 15 N 1.31628 * 120.00258 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00126 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46944 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47312 * 119.99485 * 16 14 12 19 19 H 1.48504 * 109.47259 * 239.99998 * 16 14 12 20 20 C 1.52994 * 109.47379 * 59.99724 * 5 3 2 21 21 H 1.09007 * 109.47443 * 60.00087 * 20 5 3 22 22 C 1.53003 * 109.47554 * 179.97438 * 20 5 3 23 23 C 1.52994 * 109.47554 * 179.97438 * 22 20 5 24 24 C 1.53010 * 109.46935 * 299.99991 * 23 22 20 25 25 C 1.53003 * 109.46802 * 60.00007 * 24 23 22 26 26 H 1.08998 * 109.47049 * 60.00113 * 25 24 23 27 27 O 1.42900 * 109.46596 * 179.97438 * 25 24 23 28 28 C 1.42900 * 113.99987 * 269.99818 * 27 25 24 29 29 C 1.52994 * 109.47370 * 299.99727 * 25 24 23 30 30 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 31 31 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 33 33 H 0.97005 * 120.00162 * 264.99439 * 7 5 3 34 34 H 1.09001 * 109.47399 * 300.00007 * 10 8 7 35 35 H 1.08996 * 109.47486 * 59.99898 * 10 8 7 36 36 H 0.96995 * 120.00313 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.47227 * 300.00772 * 22 20 5 38 38 H 1.09007 * 109.46480 * 59.99735 * 22 20 5 39 39 H 1.08998 * 109.47350 * 60.00143 * 23 22 20 40 40 H 1.09003 * 109.47266 * 180.02562 * 23 22 20 41 41 H 1.08998 * 109.46707 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.47226 * 300.00228 * 24 23 22 43 43 H 1.09000 * 109.47140 * 60.00608 * 28 27 25 44 44 H 1.09000 * 109.47256 * 180.02562 * 28 27 25 45 45 H 1.08994 * 109.47533 * 300.00188 * 28 27 25 46 46 H 1.09001 * 109.47088 * 300.00639 * 29 25 24 47 47 H 1.08993 * 109.47259 * 179.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7806 0.8892 7 7 3.9817 2.6797 -0.0011 8 6 4.0756 3.3552 1.1614 9 8 3.8158 2.7999 2.2079 10 6 4.5034 4.8001 1.1609 11 16 4.5316 5.4216 2.8607 12 6 5.0501 7.0806 2.5714 13 1 5.2431 7.4181 1.5638 14 6 5.2114 7.9533 3.6385 15 7 4.9766 7.5419 4.8666 16 14 5.7603 9.7123 3.3317 17 1 5.9560 9.9228 1.8748 18 1 4.7228 10.6492 3.8327 19 1 7.0392 9.9631 4.0438 20 6 4.1129 0.5815 -1.2501 21 1 3.7229 1.0757 -2.1399 22 6 5.6408 0.6621 -1.2510 23 6 6.1874 -0.0318 -2.5002 24 6 5.7541 -1.4993 -2.4993 25 6 4.2262 -1.5798 -2.4984 26 1 3.8359 -1.0863 -3.3884 27 8 3.8216 -2.9503 -2.4981 28 6 3.6562 -3.5078 -3.8035 29 6 3.6796 -0.8859 -1.2492 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.1892 3.1239 -0.8381 34 1 5.4996 4.8840 0.7265 35 1 3.7994 5.3873 0.5714 36 1 5.0890 8.1519 5.6123 37 1 5.9495 1.7074 -1.2511 38 1 6.0312 0.1681 -0.3612 39 1 5.7971 0.4617 -3.3902 40 1 7.2760 0.0252 -2.5006 41 1 6.1439 -1.9937 -3.3890 42 1 6.1444 -1.9929 -1.6093 43 1 4.6005 -3.4515 -4.3449 44 1 3.3481 -4.5498 -3.7172 45 1 2.8935 -2.9474 -4.3440 46 1 4.0700 -1.3795 -0.3592 47 1 2.5912 -0.9429 -1.2489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570636596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:44 Heat of formation + Delta-G solvation = -180.835692 kcal Electronic energy + Delta-G solvation = -28787.570586 eV Core-core repulsion = 24675.511766 eV Total energy + Delta-G solvation = -4112.058820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08846 -39.50774 -39.01531 -37.11925 -36.51542 -34.51542 -32.42027 -31.93439 -30.42409 -29.23093 -28.26502 -26.80148 -26.13916 -25.41820 -23.05453 -22.21172 -21.09919 -20.60718 -20.02483 -17.98220 -17.80550 -17.19272 -16.91413 -16.47505 -16.19714 -16.02823 -15.59257 -15.38279 -14.90705 -14.79601 -14.56873 -14.35774 -13.97696 -13.78062 -13.58660 -13.35203 -13.21747 -12.82484 -12.69403 -12.54726 -12.34579 -12.22810 -12.08228 -11.93789 -11.41159 -11.35851 -11.06446 -11.06145 -11.01272 -10.90722 -10.79327 -10.73274 -10.64558 -10.54133 -9.81137 -9.76913 -9.52401 -9.15495 -9.05519 -8.22655 -6.48806 -6.20801 -3.91118 2.14298 2.35895 2.94490 3.15740 3.22471 3.26560 3.31404 3.39679 3.68094 4.12342 4.20954 4.34452 4.53441 4.56712 4.73338 4.76436 4.88566 4.96984 4.98299 4.99472 5.03123 5.04942 5.07858 5.12980 5.13928 5.14554 5.27943 5.31166 5.37391 5.41125 5.61943 5.66106 5.70492 5.73534 5.82811 5.88204 5.89152 6.05575 6.07550 6.13929 6.25643 6.37997 6.88379 7.54242 7.61169 7.69274 8.36470 8.50099 9.24644 10.86717 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.002402 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.033997 B =11653.626473 C =12739.216402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.353 6.353 3 C 0.445 3.555 4 O -0.489 6.489 5 C 0.165 3.835 6 H 0.128 0.872 7 N -0.717 5.717 8 C 0.541 3.459 9 O -0.512 6.512 10 C -0.151 4.151 11 S -0.059 6.059 12 C -0.534 4.534 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.083 4.083 21 H 0.082 0.918 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.143 4.143 25 C 0.093 3.907 26 H 0.059 0.941 27 O -0.383 6.383 28 C 0.031 3.969 29 C -0.121 4.121 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.405 0.595 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.268 0.732 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.084 0.916 45 H 0.040 0.960 46 H 0.080 0.920 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.826 -21.315 -20.264 29.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.269 6.269 3 C 0.285 3.715 4 O -0.375 6.375 5 C 0.057 3.943 6 H 0.146 0.854 7 N -0.372 5.372 8 C 0.328 3.672 9 O -0.385 6.385 10 C -0.301 4.301 11 S 0.168 5.832 12 C -0.682 4.682 13 H 0.092 0.908 14 C -0.137 4.137 15 N -0.503 5.503 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.103 4.103 21 H 0.100 0.900 22 C -0.154 4.154 23 C -0.153 4.153 24 C -0.181 4.181 25 C 0.036 3.964 26 H 0.077 0.923 27 O -0.302 6.302 28 C -0.066 4.066 29 C -0.159 4.159 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.240 0.760 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.103 0.897 45 H 0.059 0.941 46 H 0.099 0.901 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.534 -21.975 -18.131 28.602 hybrid contribution 0.429 2.201 -2.065 3.048 sum -2.106 -19.775 -20.196 28.343 Atomic orbital electron populations 1.23268 0.76848 1.03516 1.02597 1.86583 1.23108 1.33145 1.84085 1.24465 0.92608 0.81693 0.72704 1.90702 1.66686 1.36337 1.43737 1.20440 0.86478 0.85018 1.02342 0.85402 1.45774 1.70684 1.10503 1.10283 1.20388 0.75710 0.88331 0.82814 1.90710 1.47377 1.69249 1.31133 1.23503 1.04103 0.93800 1.08738 1.85418 1.89083 1.11002 0.97724 1.22901 1.52777 0.96519 0.96024 0.90837 1.24997 0.94988 0.99229 0.94441 1.70025 1.45910 1.35916 0.98433 0.86109 0.78329 0.82567 0.78435 1.19616 1.20581 1.20573 1.21280 0.97071 0.95968 0.95945 0.89996 1.21635 0.92932 1.01809 0.98997 1.21474 1.01007 0.94758 0.98026 1.22075 0.95975 0.97177 1.02825 1.22093 0.93747 0.82256 0.98349 0.92339 1.87925 1.88901 1.25760 1.27596 1.22771 0.99683 0.99173 0.84929 1.21822 1.03334 0.92596 0.98138 0.92117 0.88139 0.91792 0.76007 0.88979 0.88936 0.92241 0.90758 0.90781 0.91856 0.91124 0.91994 0.90778 0.94196 0.89727 0.94150 0.90144 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.09 7.48 -39.25 -0.29 -4.39 16 3 C 0.45 6.21 7.22 36.01 0.26 6.47 16 4 O -0.49 -8.59 16.07 -18.75 -0.30 -8.89 16 5 C 0.17 1.98 2.09 -69.08 -0.14 1.84 16 6 H 0.13 1.65 7.58 -51.93 -0.39 1.26 16 7 N -0.72 -9.64 3.91 -54.94 -0.21 -9.86 16 8 C 0.54 10.18 7.68 -10.99 -0.08 10.09 16 9 O -0.51 -11.66 15.53 5.55 0.09 -11.58 16 10 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 11 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 12 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 13 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 14 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 16 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.08 -0.69 1.81 -90.62 -0.16 -0.85 16 21 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 22 C -0.12 -0.87 5.05 -26.73 -0.13 -1.00 16 23 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 24 C -0.14 -0.96 5.54 -26.72 -0.15 -1.11 16 25 C 0.09 0.71 2.61 -26.73 -0.07 0.64 16 26 H 0.06 0.40 7.78 -51.93 -0.40 -0.01 16 27 O -0.38 -3.40 10.35 -35.23 -0.36 -3.77 16 28 C 0.03 0.19 10.82 101.05 1.09 1.28 16 29 C -0.12 -1.01 4.33 -26.73 -0.12 -1.13 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.40 4.21 8.39 -40.82 -0.34 3.87 16 34 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 35 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.07 0.56 7.44 -51.93 -0.39 0.17 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.04 0.20 7.87 -51.93 -0.41 -0.21 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.04 0.21 8.08 -51.93 -0.42 -0.21 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.10 0.88 5.32 -51.93 -0.28 0.60 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -36.86 396.93 -7.45 -44.31 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.66 Total: 0.24 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 1.82 Total: 0.85 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.52 Total: -35.45 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.87 Total: -28.62 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.86 -7.45 -44.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570636596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.525 kcal (2) G-P(sol) polarization free energy of solvation -36.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds