Wall clock time and date at job start Wed Apr 1 2020 03:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.46957 * 299.99389 * 5 3 2 7 7 N 1.46504 * 109.46911 * 179.97438 * 5 3 2 8 8 C 1.34777 * 120.00347 * 84.99885 * 7 5 3 9 9 O 1.21283 * 119.99348 * 359.97438 * 8 7 5 10 10 C 1.50692 * 120.00201 * 179.97438 * 8 7 5 11 11 S 1.81006 * 109.47091 * 179.97438 * 10 8 7 12 12 C 1.76201 * 100.00030 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00049 * 359.97438 * 12 11 10 14 14 C 1.38795 * 120.00035 * 180.02562 * 12 11 10 15 15 N 1.31628 * 120.00258 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00126 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46944 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47312 * 119.99485 * 16 14 12 19 19 H 1.48504 * 109.47259 * 239.99998 * 16 14 12 20 20 C 1.52994 * 109.47379 * 59.99724 * 5 3 2 21 21 H 1.09007 * 109.47443 * 60.00087 * 20 5 3 22 22 C 1.53003 * 109.47554 * 179.97438 * 20 5 3 23 23 C 1.52994 * 109.47554 * 179.97438 * 22 20 5 24 24 C 1.53010 * 109.46935 * 299.99991 * 23 22 20 25 25 C 1.53003 * 109.46802 * 60.00007 * 24 23 22 26 26 H 1.08998 * 109.47049 * 60.00113 * 25 24 23 27 27 O 1.42900 * 109.46596 * 179.97438 * 25 24 23 28 28 C 1.42900 * 113.99987 * 269.99818 * 27 25 24 29 29 C 1.52994 * 109.47370 * 299.99727 * 25 24 23 30 30 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 31 31 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 33 33 H 0.97005 * 120.00162 * 264.99439 * 7 5 3 34 34 H 1.09001 * 109.47399 * 300.00007 * 10 8 7 35 35 H 1.08996 * 109.47486 * 59.99898 * 10 8 7 36 36 H 0.96995 * 120.00313 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.47227 * 300.00772 * 22 20 5 38 38 H 1.09007 * 109.46480 * 59.99735 * 22 20 5 39 39 H 1.08998 * 109.47350 * 60.00143 * 23 22 20 40 40 H 1.09003 * 109.47266 * 180.02562 * 23 22 20 41 41 H 1.08998 * 109.46707 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.47226 * 300.00228 * 24 23 22 43 43 H 1.09000 * 109.47140 * 60.00608 * 28 27 25 44 44 H 1.09000 * 109.47256 * 180.02562 * 28 27 25 45 45 H 1.08994 * 109.47533 * 300.00188 * 28 27 25 46 46 H 1.09001 * 109.47088 * 300.00639 * 29 25 24 47 47 H 1.08993 * 109.47259 * 179.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7806 0.8892 7 7 3.9817 2.6797 -0.0011 8 6 4.0756 3.3552 1.1614 9 8 3.8158 2.7999 2.2079 10 6 4.5034 4.8001 1.1609 11 16 4.5316 5.4216 2.8607 12 6 5.0501 7.0806 2.5714 13 1 5.2431 7.4181 1.5638 14 6 5.2114 7.9533 3.6385 15 7 4.9766 7.5419 4.8666 16 14 5.7603 9.7123 3.3317 17 1 5.9560 9.9228 1.8748 18 1 4.7228 10.6492 3.8327 19 1 7.0392 9.9631 4.0438 20 6 4.1129 0.5815 -1.2501 21 1 3.7229 1.0757 -2.1399 22 6 5.6408 0.6621 -1.2510 23 6 6.1874 -0.0318 -2.5002 24 6 5.7541 -1.4993 -2.4993 25 6 4.2262 -1.5798 -2.4984 26 1 3.8359 -1.0863 -3.3884 27 8 3.8216 -2.9503 -2.4981 28 6 3.6562 -3.5078 -3.8035 29 6 3.6796 -0.8859 -1.2492 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.1892 3.1239 -0.8381 34 1 5.4996 4.8840 0.7265 35 1 3.7994 5.3873 0.5714 36 1 5.0890 8.1519 5.6123 37 1 5.9495 1.7074 -1.2511 38 1 6.0312 0.1681 -0.3612 39 1 5.7971 0.4617 -3.3902 40 1 7.2760 0.0252 -2.5006 41 1 6.1439 -1.9937 -3.3890 42 1 6.1444 -1.9929 -1.6093 43 1 4.6005 -3.4515 -4.3449 44 1 3.3481 -4.5498 -3.7172 45 1 2.8935 -2.9474 -4.3440 46 1 4.0700 -1.3795 -0.3592 47 1 2.5912 -0.9429 -1.2489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570636596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:44 Heat of formation + Delta-G solvation = -205.921537 kcal Electronic energy + Delta-G solvation = -28788.658390 eV Core-core repulsion = 24675.511766 eV Total energy + Delta-G solvation = -4113.146624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.15291 -40.51256 -40.07450 -37.91496 -37.58442 -35.60542 -34.58641 -32.93910 -31.18855 -30.44168 -29.17092 -27.72980 -27.31216 -26.95286 -23.76809 -22.90247 -22.19668 -21.69164 -20.85236 -19.86330 -18.86738 -18.33843 -18.02706 -17.45507 -17.35057 -16.95435 -16.87954 -16.33718 -16.24881 -16.04540 -15.83138 -15.24159 -15.04814 -14.85003 -14.53952 -14.49379 -14.44077 -14.05507 -13.66445 -13.50939 -13.24004 -13.16530 -13.14649 -13.01225 -12.91579 -12.59614 -12.55967 -12.07720 -12.00104 -11.86943 -11.77267 -11.71850 -11.46722 -11.35226 -11.31582 -11.16014 -11.08763 -10.45377 -10.29645 -10.27681 -8.67184 -8.34906 -6.12936 1.03175 1.15016 1.32393 1.41578 1.46609 1.57149 1.79608 2.17477 2.26820 2.83971 2.99408 3.27520 3.35459 3.62170 3.76531 3.89601 3.91214 4.09892 4.17151 4.26314 4.27918 4.29166 4.31093 4.32521 4.41531 4.49380 4.50229 4.54001 4.59584 4.62457 4.66759 4.75649 4.91982 5.04079 5.11910 5.14173 5.17986 5.23936 5.27193 5.31391 5.42351 5.45640 5.50383 6.20142 6.32293 6.37178 6.60770 7.06451 7.09911 8.74637 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.002402 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.033997 B =11653.626473 C =12739.216402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.347 6.347 3 C 0.447 3.553 4 O -0.531 6.531 5 C 0.165 3.835 6 H 0.118 0.882 7 N -0.693 5.693 8 C 0.543 3.457 9 O -0.559 6.559 10 C -0.127 4.127 11 S -0.151 6.151 12 C -0.544 4.544 13 H 0.084 0.916 14 C 0.011 3.989 15 N -0.912 5.912 16 Si 1.000 3.000 17 H -0.256 1.256 18 H -0.276 1.276 19 H -0.273 1.273 20 C -0.069 4.069 21 H 0.101 0.899 22 C -0.116 4.116 23 C -0.109 4.109 24 C -0.140 4.140 25 C 0.094 3.906 26 H 0.072 0.928 27 O -0.408 6.408 28 C 0.025 3.975 29 C -0.118 4.118 30 H 0.066 0.934 31 H 0.136 0.864 32 H 0.048 0.952 33 H 0.423 0.577 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.271 0.729 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.092 0.908 45 H 0.048 0.952 46 H 0.069 0.931 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 -21.307 -23.434 31.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.263 6.263 3 C 0.289 3.711 4 O -0.419 6.419 5 C 0.057 3.943 6 H 0.135 0.865 7 N -0.348 5.348 8 C 0.330 3.670 9 O -0.436 6.436 10 C -0.278 4.278 11 S 0.076 5.924 12 C -0.691 4.691 13 H 0.102 0.898 14 C -0.193 4.193 15 N -0.548 5.548 16 Si 0.822 3.178 17 H -0.179 1.179 18 H -0.201 1.201 19 H -0.198 1.198 20 C -0.088 4.088 21 H 0.119 0.881 22 C -0.154 4.154 23 C -0.146 4.146 24 C -0.178 4.178 25 C 0.037 3.963 26 H 0.090 0.910 27 O -0.327 6.327 28 C -0.071 4.071 29 C -0.156 4.156 30 H 0.085 0.915 31 H 0.154 0.846 32 H 0.067 0.933 33 H 0.262 0.738 34 H 0.138 0.862 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.782 -22.011 -21.369 30.729 hybrid contribution 0.115 2.013 -1.151 2.322 sum -1.667 -19.998 -22.520 30.164 Atomic orbital electron populations 1.23551 0.75403 1.05718 1.02191 1.86598 1.24512 1.31797 1.83345 1.24760 0.93191 0.81679 0.71513 1.90688 1.67659 1.37649 1.45950 1.20657 0.85688 0.83921 1.04013 0.86478 1.45435 1.68892 1.11034 1.09415 1.20134 0.75452 0.87868 0.83536 1.90698 1.49759 1.69990 1.33141 1.23336 1.06221 0.94735 1.03544 1.85606 1.89504 1.12362 1.04927 1.23229 1.52666 0.96568 0.96673 0.89779 1.26150 0.94782 1.04386 0.94000 1.70190 1.47188 1.37832 0.99632 0.84886 0.77877 0.75931 0.79124 1.17926 1.20120 1.19798 1.21242 0.97593 0.95599 0.94398 0.88121 1.21649 0.92037 1.02146 0.99532 1.21442 1.01402 0.94148 0.97645 1.22047 0.95369 0.97621 1.02742 1.22102 0.94194 0.81970 0.98055 0.91019 1.87890 1.89119 1.26319 1.29391 1.22934 1.00549 0.99638 0.83958 1.21762 1.02801 0.92543 0.98512 0.91501 0.84644 0.93275 0.73843 0.86187 0.87598 0.92013 0.90420 0.91782 0.90413 0.90457 0.91015 0.91960 0.93204 0.88987 0.93313 0.91232 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -7.85 7.48 -51.38 -0.38 -8.23 16 3 C 0.45 12.32 7.22 71.24 0.51 12.84 16 4 O -0.53 -18.69 16.07 21.96 0.35 -18.33 16 5 C 0.16 3.84 2.09 44.24 0.09 3.93 16 6 H 0.12 3.08 7.58 -2.39 -0.02 3.06 16 7 N -0.69 -17.83 3.91 -446.11 -1.75 -19.57 16 8 C 0.54 20.42 7.68 87.65 0.67 21.09 16 9 O -0.56 -26.27 15.53 -3.04 -0.05 -26.32 16 10 C -0.13 -5.10 6.16 71.23 0.44 -4.66 16 11 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 12 C -0.54 -31.23 9.50 67.95 0.65 -30.59 16 13 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 14 C 0.01 0.65 5.49 84.86 0.47 1.12 16 15 N -0.91 -56.53 13.22 21.65 0.29 -56.25 16 16 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 17 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 C -0.07 -1.01 1.81 -10.79 -0.02 -1.03 16 21 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 22 C -0.12 -1.50 5.05 30.59 0.15 -1.34 16 23 C -0.11 -1.04 5.92 30.60 0.18 -0.86 16 24 C -0.14 -1.59 5.54 30.60 0.17 -1.42 16 25 C 0.09 1.23 2.61 30.59 0.08 1.31 16 26 H 0.07 0.75 7.78 -2.39 -0.02 0.73 16 27 O -0.41 -6.59 10.35 -148.98 -1.54 -8.13 16 28 C 0.03 0.25 10.82 113.37 1.23 1.48 16 29 C -0.12 -1.82 4.33 30.59 0.13 -1.69 16 30 H 0.07 1.12 8.13 -2.39 -0.02 1.11 16 31 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.05 1.03 8.13 -2.39 -0.02 1.01 16 33 H 0.42 7.77 8.39 -92.70 -0.78 6.99 16 34 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 35 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 36 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.08 0.96 7.44 -2.39 -0.02 0.95 16 38 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 0.69 7.87 -2.39 -0.02 0.67 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.05 0.38 7.87 -2.39 -0.02 0.36 16 44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.05 0.39 8.08 -2.39 -0.02 0.37 16 46 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.09 1.50 5.32 -2.39 -0.01 1.49 16 Total: -1.00 -82.89 396.93 3.93 -78.96 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.19 Total: 19.79 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 5.95 Total: 1.81 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -1.46 Total: -75.82 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -1.62 Total: -61.02 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -82.89 3.93 -78.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570636596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.961 kcal (2) G-P(sol) polarization free energy of solvation -82.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds