Wall clock time and date at job start Wed Apr 1 2020 03:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 116.99912 * 2 1 4 4 O 1.20821 * 120.00000 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99914 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46895 * 299.99197 * 5 3 2 7 7 N 1.46507 * 109.46941 * 179.97438 * 5 3 2 8 8 C 1.34776 * 120.00125 * 84.99708 * 7 5 3 9 9 O 1.21277 * 119.99647 * 359.97438 * 8 7 5 10 10 C 1.50698 * 119.99921 * 180.02562 * 8 7 5 11 11 S 1.80996 * 109.47301 * 179.97438 * 10 8 7 12 12 C 1.76204 * 100.00118 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99500 * 0.02562 * 12 11 10 14 14 C 1.38793 * 119.99655 * 180.02562 * 12 11 10 15 15 N 1.31634 * 120.00496 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99624 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47410 * 89.99889 * 16 14 12 18 18 H 1.48506 * 109.47073 * 210.00077 * 16 14 12 19 19 H 1.48494 * 109.47225 * 329.99712 * 16 14 12 20 20 C 1.52998 * 109.47291 * 59.99737 * 5 3 2 21 21 H 1.09006 * 109.46642 * 179.97438 * 20 5 3 22 22 C 1.52996 * 109.47247 * 59.99925 * 20 5 3 23 23 C 1.52998 * 109.47129 * 179.97438 * 22 20 5 24 24 C 1.53006 * 109.46859 * 60.00186 * 23 22 20 25 25 C 1.52996 * 109.47098 * 299.99833 * 24 23 22 26 26 H 1.08998 * 109.47025 * 180.02562 * 25 24 23 27 27 O 1.42899 * 109.47031 * 300.00156 * 25 24 23 28 28 C 1.42905 * 113.99778 * 269.99750 * 27 25 24 29 29 C 1.52998 * 109.47247 * 59.99955 * 25 24 23 30 30 H 1.08999 * 109.47236 * 299.99820 * 1 2 3 31 31 H 1.08997 * 109.47410 * 60.00516 * 1 2 3 32 32 H 1.09003 * 109.46769 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99695 * 264.99696 * 7 5 3 34 34 H 1.09005 * 109.46751 * 300.00035 * 10 8 7 35 35 H 1.08999 * 109.47158 * 59.99430 * 10 8 7 36 36 H 0.96996 * 119.99958 * 180.02562 * 15 14 12 37 37 H 1.09009 * 109.47167 * 60.00169 * 22 20 5 38 38 H 1.09001 * 109.47120 * 300.00232 * 22 20 5 39 39 H 1.09001 * 109.47617 * 300.00304 * 23 22 20 40 40 H 1.09004 * 109.46956 * 180.02562 * 23 22 20 41 41 H 1.08997 * 109.46753 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.46909 * 59.99685 * 24 23 22 43 43 H 1.09000 * 109.47187 * 300.00233 * 28 27 25 44 44 H 1.09001 * 109.46558 * 60.00281 * 28 27 25 45 45 H 1.09001 * 109.47103 * 179.97438 * 28 27 25 46 46 H 1.09001 * 109.47250 * 59.99848 * 29 25 24 47 47 H 1.09003 * 109.47592 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7807 0.8892 7 7 3.9816 2.6798 -0.0011 8 6 4.0755 3.3552 1.1615 9 8 3.8157 2.8000 2.2079 10 6 4.5022 4.8005 1.1608 11 16 4.5306 5.4220 2.8605 12 6 5.0477 7.0814 2.5710 13 1 5.2392 7.4192 1.5633 14 6 5.2087 7.9542 3.6381 15 7 4.9758 7.5422 4.8664 16 14 5.7562 9.7136 3.3311 17 1 4.5636 10.5749 3.1285 18 1 6.5275 10.2034 4.5018 19 1 6.6128 9.7612 2.1190 20 6 4.1129 0.5815 -1.2501 21 1 5.2014 0.6390 -1.2507 22 6 3.5654 1.2752 -2.4990 23 6 4.1125 0.5823 -3.7486 24 6 3.6792 -0.8852 -3.7489 25 6 4.2267 -1.5789 -2.5000 26 1 3.9184 -2.6243 -2.5004 27 8 5.6537 -1.5035 -2.5002 28 6 6.2935 -2.6018 -3.1534 29 6 3.6796 -0.8859 -1.2504 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 4.1891 3.1239 -0.8381 34 1 5.4981 4.8851 0.7259 35 1 3.7974 5.3872 0.5716 36 1 5.0880 8.1523 5.6120 37 1 3.8744 2.3206 -2.4990 38 1 2.4769 1.2182 -2.4986 39 1 5.2010 0.6396 -3.7488 40 1 3.7227 1.0768 -4.6383 41 1 4.0686 -1.3787 -4.6393 42 1 2.5907 -0.9425 -3.7487 43 1 6.0205 -3.5310 -2.6533 44 1 5.9733 -2.6418 -4.1945 45 1 7.3747 -2.4699 -3.1109 46 1 2.5911 -0.9432 -1.2502 47 1 4.0700 -1.3798 -0.3606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570636598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:50 Heat of formation + Delta-G solvation = -177.680104 kcal Electronic energy + Delta-G solvation = -29095.446837 eV Core-core repulsion = 24983.524854 eV Total energy + Delta-G solvation = -4111.921983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.17738 -39.50577 -38.99390 -36.83303 -36.45471 -34.38045 -32.39547 -31.86871 -30.54471 -29.19081 -28.23220 -26.84450 -26.07791 -25.38845 -23.01782 -22.65601 -21.13862 -20.23994 -19.89356 -17.96054 -17.64996 -17.13292 -16.78519 -16.38982 -16.19289 -16.14256 -15.57184 -15.25867 -14.95911 -14.77246 -14.69532 -14.09024 -13.93628 -13.88023 -13.50768 -13.18844 -13.12696 -12.91487 -12.70438 -12.49140 -12.32893 -12.23412 -12.11311 -11.89074 -11.65460 -11.40509 -11.03575 -10.99563 -10.96535 -10.82236 -10.73996 -10.63349 -10.48921 -10.44209 -9.79649 -9.77146 -9.48130 -9.10498 -9.02133 -8.20295 -6.46034 -6.18305 -3.88476 2.19941 2.39222 3.01997 3.19259 3.25240 3.30303 3.34291 3.48814 3.69160 4.18833 4.23514 4.32801 4.45720 4.62933 4.75960 4.84346 4.91011 4.96262 4.97943 5.00359 5.05561 5.05879 5.13096 5.16841 5.20215 5.28264 5.34137 5.38303 5.39129 5.41934 5.54499 5.68056 5.71776 5.79194 5.87188 5.92475 5.94067 5.96906 6.13257 6.17991 6.30925 6.43655 6.90049 7.59912 7.63398 7.72640 8.38763 8.54888 9.26970 10.89183 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.002505 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.999045 B =11175.026219 C =12054.770775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.356 6.356 3 C 0.449 3.551 4 O -0.490 6.490 5 C 0.163 3.837 6 H 0.127 0.873 7 N -0.718 5.718 8 C 0.540 3.460 9 O -0.513 6.513 10 C -0.151 4.151 11 S -0.059 6.059 12 C -0.534 4.534 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.083 4.083 21 H 0.105 0.895 22 C -0.121 4.121 23 C -0.110 4.110 24 C -0.142 4.142 25 C 0.091 3.909 26 H 0.062 0.938 27 O -0.379 6.379 28 C 0.030 3.970 29 C -0.120 4.120 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.404 0.596 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.268 0.732 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.038 0.962 45 H 0.084 0.916 46 H 0.100 0.900 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 -22.474 -20.456 30.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.289 3.711 4 O -0.375 6.375 5 C 0.054 3.946 6 H 0.144 0.856 7 N -0.373 5.373 8 C 0.327 3.673 9 O -0.387 6.387 10 C -0.302 4.302 11 S 0.168 5.832 12 C -0.682 4.682 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.102 4.102 21 H 0.123 0.877 22 C -0.158 4.158 23 C -0.148 4.148 24 C -0.179 4.179 25 C 0.034 3.966 26 H 0.080 0.920 27 O -0.298 6.298 28 C -0.066 4.066 29 C -0.157 4.157 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.241 0.759 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.103 0.897 46 H 0.118 0.882 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.684 -22.874 -18.407 29.591 hybrid contribution 0.254 1.834 -1.921 2.668 sum -3.430 -21.040 -20.328 29.457 Atomic orbital electron populations 1.23254 0.76994 1.03397 1.02652 1.86551 1.22989 1.33454 1.84285 1.24483 0.92623 0.81594 0.72433 1.90697 1.66679 1.36287 1.43835 1.20531 0.86479 0.85080 1.02478 0.85579 1.45835 1.70581 1.10647 1.10253 1.20392 0.75684 0.88358 0.82865 1.90699 1.47500 1.69301 1.31163 1.23509 1.04137 0.93856 1.08688 1.85396 1.89113 1.10905 0.97790 1.22867 1.52871 0.96509 0.95991 0.90889 1.24992 0.94990 0.99212 0.94429 1.70021 1.45969 1.35936 0.98421 0.86161 0.78684 0.82643 0.77967 1.20297 1.20773 1.19680 1.21320 1.02507 0.94787 0.91555 0.87696 1.21677 1.00390 0.99462 0.94296 1.21371 1.01808 0.94520 0.97063 1.22035 1.01011 0.96890 0.97994 1.22114 0.81078 0.98454 0.94992 0.91991 1.87954 1.18671 1.45176 1.77953 1.22769 0.98400 0.89344 0.96112 1.21939 1.02564 0.93891 0.97338 0.91802 0.92122 0.88243 0.75943 0.88963 0.88948 0.92211 0.91428 0.92118 0.90840 0.92006 0.91933 0.91098 0.94178 0.94344 0.89746 0.88163 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.97 7.49 -39.26 -0.29 -4.27 16 3 C 0.45 6.27 5.96 36.01 0.21 6.49 16 4 O -0.49 -8.62 16.07 -18.75 -0.30 -8.92 16 5 C 0.16 2.05 2.35 -69.08 -0.16 1.89 16 6 H 0.13 1.71 7.58 -51.93 -0.39 1.31 16 7 N -0.72 -10.33 4.53 -54.93 -0.25 -10.58 16 8 C 0.54 10.58 7.68 -10.99 -0.08 10.49 16 9 O -0.51 -12.00 15.53 5.56 0.09 -11.91 16 10 C -0.15 -3.18 6.16 36.00 0.22 -2.95 16 11 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 12 C -0.53 -15.48 9.50 30.94 0.29 -15.19 16 13 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 14 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 15 N -0.87 -26.57 13.22 55.49 0.73 -25.83 16 16 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 C -0.08 -0.76 2.03 -90.62 -0.18 -0.95 16 21 H 0.10 1.00 7.68 -51.93 -0.40 0.61 16 22 C -0.12 -1.02 4.78 -26.73 -0.13 -1.15 16 23 C -0.11 -0.80 5.78 -26.73 -0.15 -0.95 16 24 C -0.14 -0.91 5.63 -26.73 -0.15 -1.06 16 25 C 0.09 0.64 2.92 -26.73 -0.08 0.57 16 26 H 0.06 0.37 7.78 -51.93 -0.40 -0.04 16 27 O -0.38 -3.14 9.00 -35.23 -0.32 -3.46 16 28 C 0.03 0.18 10.82 101.05 1.09 1.27 16 29 C -0.12 -0.96 4.43 -26.73 -0.12 -1.08 16 30 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.40 4.71 6.86 -40.82 -0.28 4.43 16 34 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 35 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 36 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 37 H 0.07 0.57 6.50 -51.92 -0.34 0.23 16 38 H 0.06 0.56 7.22 -51.93 -0.37 0.19 16 39 H 0.07 0.58 7.68 -51.93 -0.40 0.18 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.04 0.20 8.08 -51.93 -0.42 -0.22 16 44 H 0.04 0.19 7.87 -51.93 -0.41 -0.22 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.10 0.80 5.33 -51.93 -0.28 0.52 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 391.19 15.07 5.90 5.90 Total: -1.00 -36.88 391.19 -7.40 -44.28 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.45 Total: 1.19 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 1.73 Total: 0.73 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.48 Total: -36.41 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.83 Total: -28.56 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.88 -7.40 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570636598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.402 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds