Wall clock time and date at job start Wed Apr 1 2020 03:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 116.99912 * 2 1 4 4 O 1.20821 * 120.00000 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99914 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46895 * 299.99197 * 5 3 2 7 7 N 1.46507 * 109.46941 * 179.97438 * 5 3 2 8 8 C 1.34776 * 120.00125 * 84.99708 * 7 5 3 9 9 O 1.21277 * 119.99647 * 359.97438 * 8 7 5 10 10 C 1.50698 * 119.99921 * 180.02562 * 8 7 5 11 11 S 1.80996 * 109.47301 * 179.97438 * 10 8 7 12 12 C 1.76204 * 100.00118 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99500 * 0.02562 * 12 11 10 14 14 C 1.38793 * 119.99655 * 180.02562 * 12 11 10 15 15 N 1.31634 * 120.00496 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99624 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47410 * 89.99889 * 16 14 12 18 18 H 1.48506 * 109.47073 * 210.00077 * 16 14 12 19 19 H 1.48494 * 109.47225 * 329.99712 * 16 14 12 20 20 C 1.52998 * 109.47291 * 59.99737 * 5 3 2 21 21 H 1.09006 * 109.46642 * 179.97438 * 20 5 3 22 22 C 1.52996 * 109.47247 * 59.99925 * 20 5 3 23 23 C 1.52998 * 109.47129 * 179.97438 * 22 20 5 24 24 C 1.53006 * 109.46859 * 60.00186 * 23 22 20 25 25 C 1.52996 * 109.47098 * 299.99833 * 24 23 22 26 26 H 1.08998 * 109.47025 * 180.02562 * 25 24 23 27 27 O 1.42899 * 109.47031 * 300.00156 * 25 24 23 28 28 C 1.42905 * 113.99778 * 269.99750 * 27 25 24 29 29 C 1.52998 * 109.47247 * 59.99955 * 25 24 23 30 30 H 1.08999 * 109.47236 * 299.99820 * 1 2 3 31 31 H 1.08997 * 109.47410 * 60.00516 * 1 2 3 32 32 H 1.09003 * 109.46769 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99695 * 264.99696 * 7 5 3 34 34 H 1.09005 * 109.46751 * 300.00035 * 10 8 7 35 35 H 1.08999 * 109.47158 * 59.99430 * 10 8 7 36 36 H 0.96996 * 119.99958 * 180.02562 * 15 14 12 37 37 H 1.09009 * 109.47167 * 60.00169 * 22 20 5 38 38 H 1.09001 * 109.47120 * 300.00232 * 22 20 5 39 39 H 1.09001 * 109.47617 * 300.00304 * 23 22 20 40 40 H 1.09004 * 109.46956 * 180.02562 * 23 22 20 41 41 H 1.08997 * 109.46753 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.46909 * 59.99685 * 24 23 22 43 43 H 1.09000 * 109.47187 * 300.00233 * 28 27 25 44 44 H 1.09001 * 109.46558 * 60.00281 * 28 27 25 45 45 H 1.09001 * 109.47103 * 179.97438 * 28 27 25 46 46 H 1.09001 * 109.47250 * 59.99848 * 29 25 24 47 47 H 1.09003 * 109.47592 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7807 0.8892 7 7 3.9816 2.6798 -0.0011 8 6 4.0755 3.3552 1.1615 9 8 3.8157 2.8000 2.2079 10 6 4.5022 4.8005 1.1608 11 16 4.5306 5.4220 2.8605 12 6 5.0477 7.0814 2.5710 13 1 5.2392 7.4192 1.5633 14 6 5.2087 7.9542 3.6381 15 7 4.9758 7.5422 4.8664 16 14 5.7562 9.7136 3.3311 17 1 4.5636 10.5749 3.1285 18 1 6.5275 10.2034 4.5018 19 1 6.6128 9.7612 2.1190 20 6 4.1129 0.5815 -1.2501 21 1 5.2014 0.6390 -1.2507 22 6 3.5654 1.2752 -2.4990 23 6 4.1125 0.5823 -3.7486 24 6 3.6792 -0.8852 -3.7489 25 6 4.2267 -1.5789 -2.5000 26 1 3.9184 -2.6243 -2.5004 27 8 5.6537 -1.5035 -2.5002 28 6 6.2935 -2.6018 -3.1534 29 6 3.6796 -0.8859 -1.2504 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 4.1891 3.1239 -0.8381 34 1 5.4981 4.8851 0.7259 35 1 3.7974 5.3872 0.5716 36 1 5.0880 8.1523 5.6120 37 1 3.8744 2.3206 -2.4990 38 1 2.4769 1.2182 -2.4986 39 1 5.2010 0.6396 -3.7488 40 1 3.7227 1.0768 -4.6383 41 1 4.0686 -1.3787 -4.6393 42 1 2.5907 -0.9425 -3.7487 43 1 6.0205 -3.5310 -2.6533 44 1 5.9733 -2.6418 -4.1945 45 1 7.3747 -2.4699 -3.1109 46 1 2.5911 -0.9432 -1.2502 47 1 4.0700 -1.3798 -0.3606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570636598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:49 Heat of formation + Delta-G solvation = -202.746552 kcal Electronic energy + Delta-G solvation = -29096.533800 eV Core-core repulsion = 24983.524854 eV Total energy + Delta-G solvation = -4113.008946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.23638 -40.48079 -40.13975 -37.76269 -37.42971 -35.47542 -34.59004 -32.90516 -31.28253 -30.50313 -29.10661 -27.73544 -27.34025 -26.89210 -23.71714 -23.47146 -22.20776 -21.46994 -20.62600 -19.91229 -18.68423 -18.31580 -18.04305 -17.43487 -17.24940 -16.88555 -16.79751 -16.42637 -16.17997 -16.07819 -15.75443 -15.59169 -14.98105 -14.72947 -14.60893 -14.48746 -14.32974 -14.01034 -13.62893 -13.46838 -13.24356 -13.17835 -13.07793 -12.89750 -12.84576 -12.82275 -12.60661 -12.21576 -12.13770 -11.77869 -11.74383 -11.69775 -11.52611 -11.23978 -11.17883 -11.14823 -11.00788 -10.40989 -10.30512 -10.29767 -8.68015 -8.35123 -6.13546 1.07797 1.15278 1.31903 1.42513 1.45917 1.56150 1.79316 2.19944 2.26674 2.98719 2.99018 3.28337 3.37545 3.61729 3.68429 3.85256 3.90240 4.10192 4.17302 4.26690 4.29140 4.30582 4.31640 4.38711 4.46689 4.48502 4.52396 4.63229 4.65608 4.68762 4.72022 4.73657 4.91877 5.00456 5.07112 5.15090 5.18289 5.24021 5.28711 5.34737 5.37475 5.41489 5.54872 6.19526 6.29813 6.41690 6.63815 7.05860 7.07609 8.74286 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.002505 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.999045 B =11175.026219 C =12054.770775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.347 6.347 3 C 0.452 3.548 4 O -0.531 6.531 5 C 0.160 3.840 6 H 0.118 0.882 7 N -0.696 5.696 8 C 0.542 3.458 9 O -0.558 6.558 10 C -0.129 4.129 11 S -0.148 6.148 12 C -0.546 4.546 13 H 0.083 0.917 14 C 0.012 3.988 15 N -0.912 5.912 16 Si 1.000 3.000 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.257 1.257 20 C -0.070 4.070 21 H 0.105 0.895 22 C -0.120 4.120 23 C -0.106 4.106 24 C -0.140 4.140 25 C 0.092 3.908 26 H 0.077 0.923 27 O -0.400 6.400 28 C 0.026 3.974 29 C -0.118 4.118 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.139 0.861 33 H 0.420 0.580 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.271 0.729 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 -23.051 -23.244 32.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.262 6.262 3 C 0.294 3.706 4 O -0.420 6.420 5 C 0.052 3.948 6 H 0.135 0.865 7 N -0.351 5.351 8 C 0.329 3.671 9 O -0.435 6.435 10 C -0.280 4.280 11 S 0.079 5.921 12 C -0.694 4.694 13 H 0.101 0.899 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.822 3.178 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.181 1.181 20 C -0.089 4.089 21 H 0.123 0.877 22 C -0.157 4.157 23 C -0.144 4.144 24 C -0.177 4.177 25 C 0.035 3.965 26 H 0.095 0.905 27 O -0.319 6.319 28 C -0.071 4.071 29 C -0.156 4.156 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.259 0.741 34 H 0.136 0.864 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.120 0.880 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.348 -23.499 -21.260 31.865 hybrid contribution 0.092 1.847 -1.128 2.166 sum -3.256 -21.652 -22.388 31.315 Atomic orbital electron populations 1.23564 0.75382 1.05868 1.02110 1.86553 1.24468 1.31710 1.83476 1.24610 0.92928 0.81743 0.71287 1.90684 1.67580 1.37679 1.46049 1.20774 0.86196 0.83779 1.04039 0.86477 1.45552 1.68895 1.11355 1.09304 1.20154 0.75473 0.87929 0.83570 1.90684 1.49818 1.70009 1.33038 1.23348 1.06109 0.94806 1.03722 1.85567 1.89536 1.12303 1.04696 1.23200 1.52926 0.96550 0.96683 0.89853 1.26152 0.94709 1.04413 0.93955 1.70186 1.47150 1.37871 0.99615 0.84928 0.78512 0.75956 0.78420 1.19438 1.20167 1.18056 1.21282 1.02218 0.95411 0.90028 0.87695 1.21678 0.99950 0.99579 0.94525 1.21336 1.01375 0.95144 0.96498 1.22037 1.01460 0.96156 0.98085 1.22136 0.80745 0.99191 0.94458 0.90485 1.87921 1.19250 1.46288 1.78468 1.22897 0.98528 0.89002 0.96633 1.21936 1.02695 0.92833 0.98135 0.93458 0.91625 0.84250 0.74121 0.86431 0.87593 0.91967 0.91448 0.92758 0.91385 0.91172 0.90899 0.90389 0.93415 0.93304 0.89442 0.87978 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.56 113.37 1.20 1.59 16 2 O -0.35 -7.38 7.49 -51.42 -0.38 -7.77 16 3 C 0.45 12.54 5.96 71.24 0.42 12.97 16 4 O -0.53 -18.84 16.07 21.98 0.35 -18.49 16 5 C 0.16 3.98 2.35 44.24 0.10 4.09 16 6 H 0.12 3.21 7.58 -2.39 -0.02 3.19 16 7 N -0.70 -19.69 4.53 -446.09 -2.02 -21.71 16 8 C 0.54 21.42 7.68 87.66 0.67 22.09 16 9 O -0.56 -26.97 15.53 -3.02 -0.05 -27.02 16 10 C -0.13 -5.39 6.16 71.24 0.44 -4.95 16 11 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 12 C -0.55 -31.86 9.50 67.95 0.65 -31.21 16 13 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 14 C 0.01 0.72 5.49 84.86 0.47 1.18 16 15 N -0.91 -56.99 13.22 21.65 0.29 -56.70 16 16 Si 1.00 44.38 29.55 68.60 2.03 46.41 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 20 C -0.07 -1.21 2.03 -10.80 -0.02 -1.24 16 21 H 0.10 1.87 7.68 -2.38 -0.02 1.85 16 22 C -0.12 -1.84 4.78 30.59 0.15 -1.69 16 23 C -0.11 -1.30 5.78 30.60 0.18 -1.12 16 24 C -0.14 -1.42 5.63 30.59 0.17 -1.25 16 25 C 0.09 1.08 2.92 30.59 0.09 1.17 16 26 H 0.08 0.69 7.78 -2.39 -0.02 0.67 16 27 O -0.40 -5.84 9.00 -148.98 -1.34 -7.18 16 28 C 0.03 0.24 10.82 113.37 1.23 1.47 16 29 C -0.12 -1.70 4.43 30.59 0.14 -1.57 16 30 H 0.05 0.96 8.13 -2.39 -0.02 0.94 16 31 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 32 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.42 9.22 6.86 -92.71 -0.64 8.59 16 34 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 35 H 0.11 4.15 8.14 -2.40 -0.02 4.13 16 36 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 37 H 0.07 1.02 6.50 -2.38 -0.02 1.00 16 38 H 0.05 0.92 7.22 -2.39 -0.02 0.91 16 39 H 0.07 0.93 7.68 -2.39 -0.02 0.92 16 40 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.07 0.62 7.87 -2.39 -0.02 0.60 16 42 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.05 0.37 8.08 -2.39 -0.02 0.35 16 44 H 0.05 0.36 7.87 -2.39 -0.02 0.34 16 45 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 46 H 0.10 1.43 5.33 -2.39 -0.01 1.41 16 47 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -82.42 391.19 3.93 -78.50 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.34 Total: 22.09 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 5.87 Total: 1.53 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -1.73 Total: -78.42 kcal Atomic # 8 Polarization: -59.04 SS G_CDS: -1.42 Total: -60.46 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -82.42 3.93 -78.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570636598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.248 kcal (2) G-P(sol) polarization free energy of solvation -82.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds