Wall clock time and date at job start Wed Apr 1 2020 03:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 117.00296 * 2 1 4 4 O 1.20830 * 119.99787 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99982 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.46890 * 299.99809 * 5 3 2 7 7 N 1.46500 * 109.46839 * 179.97438 * 5 3 2 8 8 C 1.34775 * 119.99893 * 84.99863 * 7 5 3 9 9 O 1.21284 * 120.00295 * 0.02562 * 8 7 5 10 10 C 1.50708 * 119.99957 * 179.97438 * 8 7 5 11 11 S 1.80998 * 109.47052 * 180.02562 * 10 8 7 12 12 C 1.76199 * 100.00013 * 180.02562 * 11 10 8 13 13 H 1.07991 * 119.99794 * 0.02562 * 12 11 10 14 14 C 1.38798 * 119.99771 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00311 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99653 * 180.02562 * 14 12 11 17 17 H 1.48511 * 109.47049 * 269.99633 * 16 14 12 18 18 H 1.48494 * 109.47357 * 29.99707 * 16 14 12 19 19 H 1.48502 * 109.47120 * 150.00426 * 16 14 12 20 20 C 1.52997 * 109.46975 * 60.00499 * 5 3 2 21 21 H 1.09000 * 109.47187 * 180.02562 * 20 5 3 22 22 C 1.52995 * 109.47776 * 59.99545 * 20 5 3 23 23 C 1.53001 * 109.47508 * 179.97438 * 22 20 5 24 24 C 1.53005 * 109.46826 * 60.00270 * 23 22 20 25 25 C 1.53005 * 109.47111 * 299.99845 * 24 23 22 26 26 H 1.08994 * 109.46926 * 300.00232 * 25 24 23 27 27 O 1.42893 * 109.47130 * 179.97438 * 25 24 23 28 28 C 1.42897 * 113.99825 * 90.00148 * 27 25 24 29 29 C 1.53002 * 109.46939 * 60.00032 * 25 24 23 30 30 H 1.09001 * 109.46703 * 60.00003 * 1 2 3 31 31 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47084 * 300.00061 * 1 2 3 33 33 H 0.97002 * 120.00447 * 264.99989 * 7 5 3 34 34 H 1.09005 * 109.46512 * 60.00633 * 10 8 7 35 35 H 1.08991 * 109.47135 * 300.00153 * 10 8 7 36 36 H 0.97001 * 119.99662 * 359.97438 * 15 14 12 37 37 H 1.09000 * 109.47274 * 300.00573 * 22 20 5 38 38 H 1.09001 * 109.46999 * 60.00010 * 22 20 5 39 39 H 1.09004 * 109.46849 * 300.00340 * 23 22 20 40 40 H 1.09003 * 109.47289 * 180.02562 * 23 22 20 41 41 H 1.08995 * 109.47060 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.46758 * 59.99930 * 24 23 22 43 43 H 1.09001 * 109.47204 * 60.00276 * 28 27 25 44 44 H 1.09006 * 109.47024 * 180.02562 * 28 27 25 45 45 H 1.09000 * 109.47208 * 299.99982 * 28 27 25 46 46 H 1.08997 * 109.47397 * 179.97438 * 29 25 24 47 47 H 1.09004 * 109.47190 * 60.00152 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9564 0.7805 0.8892 7 7 3.9818 2.6796 -0.0011 8 6 4.0757 3.3550 1.1615 9 8 3.8168 2.7996 2.2081 10 6 4.5036 4.8000 1.1610 11 16 4.5332 5.4210 2.8609 12 6 5.0500 7.0804 2.5715 13 1 5.2407 7.4186 1.5638 14 6 5.2118 7.9530 3.6387 15 7 4.9797 7.5407 4.8671 16 14 5.7590 9.7125 3.3318 17 1 7.2418 9.7837 3.3707 18 1 5.2769 10.1555 1.9990 19 1 5.1933 10.5971 4.3820 20 6 4.1129 0.5815 -1.2502 21 1 5.2014 0.6381 -1.2505 22 6 3.5654 1.2753 -2.4991 23 6 4.1124 0.5824 -3.7487 24 6 3.6790 -0.8850 -3.7492 25 6 4.2266 -1.5789 -2.5003 26 1 5.3150 -1.5215 -2.5005 27 8 3.8213 -2.9491 -2.5004 28 6 4.7404 -3.8269 -3.1536 29 6 3.6796 -0.8859 -1.2506 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.1892 3.1238 -0.8381 34 1 3.7993 5.3872 0.5716 35 1 5.4997 4.8839 0.7266 36 1 4.6953 6.6271 5.0264 37 1 2.4768 1.2183 -2.4987 38 1 3.8744 2.3206 -2.4990 39 1 5.2009 0.6398 -3.7489 40 1 3.7226 1.0770 -4.6385 41 1 4.0690 -1.3788 -4.6391 42 1 2.5905 -0.9423 -3.7489 43 1 5.7077 -3.7777 -2.6537 44 1 4.3605 -4.8478 -3.1111 45 1 4.8536 -3.5250 -4.1948 46 1 4.0693 -1.3804 -0.3609 47 1 2.5911 -0.9433 -1.2504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570636599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:52 Heat of formation + Delta-G solvation = -184.591951 kcal Electronic energy + Delta-G solvation = -28953.665476 eV Core-core repulsion = 24841.443772 eV Total energy + Delta-G solvation = -4112.221703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25553 -39.46694 -39.12116 -37.18535 -36.53612 -34.58615 -32.52269 -32.01569 -30.52007 -29.33584 -28.26936 -26.85139 -26.16004 -24.79944 -23.05979 -22.60167 -21.28796 -20.45376 -20.10034 -18.40148 -17.74613 -17.34557 -16.98127 -16.55034 -16.35939 -16.15998 -15.50642 -15.45808 -14.94202 -14.83955 -14.41282 -14.33624 -13.99799 -13.84382 -13.64845 -13.44881 -13.31909 -13.05538 -12.67980 -12.40344 -12.36326 -12.27457 -12.12598 -11.98512 -11.85734 -11.57906 -11.44868 -11.03776 -10.95250 -10.90439 -10.83022 -10.62861 -10.58816 -10.18618 -9.84437 -9.66015 -9.57940 -9.24877 -9.00163 -8.22245 -6.66610 -6.61781 -3.99519 2.12172 2.30762 2.83119 3.06191 3.27792 3.35938 3.39947 3.53249 3.58311 4.06079 4.21389 4.25000 4.46594 4.55251 4.62367 4.71297 4.77756 4.90383 4.95281 4.95468 4.98184 5.02077 5.03149 5.06032 5.14338 5.15922 5.22949 5.26265 5.30157 5.38041 5.49800 5.54815 5.57186 5.66117 5.72894 5.75744 5.80495 5.90874 6.00464 6.04908 6.21574 6.32043 6.85647 7.44104 7.66204 7.93083 8.38456 8.50616 9.27540 10.82207 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.002342 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.792832 B =11954.481636 C =12549.812196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.352 6.352 3 C 0.448 3.552 4 O -0.490 6.490 5 C 0.164 3.836 6 H 0.128 0.872 7 N -0.717 5.717 8 C 0.539 3.461 9 O -0.512 6.512 10 C -0.129 4.129 11 S -0.114 6.114 12 C -0.607 4.607 13 H 0.066 0.934 14 C 0.035 3.965 15 N -0.884 5.884 16 Si 1.087 2.913 17 H -0.284 1.284 18 H -0.287 1.287 19 H -0.280 1.280 20 C -0.085 4.085 21 H 0.098 0.902 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.142 4.142 25 C 0.093 3.907 26 H 0.061 0.939 27 O -0.383 6.383 28 C 0.031 3.969 29 C -0.123 4.123 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.405 0.595 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.278 0.722 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.077 0.923 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 -21.668 -21.135 30.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.269 6.269 3 C 0.288 3.712 4 O -0.376 6.376 5 C 0.056 3.944 6 H 0.146 0.854 7 N -0.373 5.373 8 C 0.326 3.674 9 O -0.385 6.385 10 C -0.280 4.280 11 S 0.112 5.888 12 C -0.755 4.755 13 H 0.085 0.915 14 C -0.176 4.176 15 N -0.519 5.519 16 Si 0.914 3.086 17 H -0.210 1.210 18 H -0.213 1.213 19 H -0.205 1.205 20 C -0.104 4.104 21 H 0.116 0.884 22 C -0.162 4.162 23 C -0.151 4.151 24 C -0.180 4.180 25 C 0.035 3.965 26 H 0.079 0.921 27 O -0.302 6.302 28 C -0.066 4.066 29 C -0.160 4.160 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.241 0.759 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.103 0.897 45 H 0.058 0.942 46 H 0.096 0.904 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.506 -20.918 -18.510 28.044 hybrid contribution 0.023 -0.328 -2.676 2.696 sum -2.482 -21.246 -21.186 30.107 Atomic orbital electron populations 1.23270 0.76809 1.03565 1.02575 1.86583 1.23122 1.33087 1.84075 1.24358 0.92512 0.81738 0.72574 1.90703 1.66661 1.36321 1.43867 1.20447 0.86900 0.84886 1.02136 0.85421 1.45797 1.70618 1.10654 1.10217 1.20380 0.75778 0.88328 0.82942 1.90709 1.47447 1.69237 1.31145 1.23289 1.04413 0.93739 1.06539 1.84833 1.89752 1.12802 1.01407 1.23723 1.57103 0.96253 0.98393 0.91528 1.26064 0.94314 1.05351 0.91859 1.70770 1.40168 1.20269 1.20653 0.83283 0.76564 0.73316 0.75478 1.21047 1.21295 1.20516 1.21342 1.01846 0.94966 0.92257 0.88385 1.21729 1.01096 0.99501 0.93881 1.21446 1.01097 0.94825 0.97711 1.22056 1.02258 0.95636 0.98009 1.22085 0.97986 0.81485 0.94912 0.92114 1.87924 1.47041 1.17161 1.78062 1.22783 0.93216 0.94404 0.96197 1.21835 1.04399 0.92427 0.97364 0.92093 0.88091 0.91831 0.75873 0.88650 0.88709 0.90963 0.91561 0.91141 0.91475 0.91209 0.91836 0.90989 0.94005 0.89708 0.94216 0.90393 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.35 -4.09 7.49 -39.26 -0.29 -4.38 16 3 C 0.45 6.20 5.96 36.01 0.21 6.42 16 4 O -0.49 -8.52 16.07 -18.75 -0.30 -8.82 16 5 C 0.16 1.96 2.35 -69.08 -0.16 1.80 16 6 H 0.13 1.62 7.58 -51.93 -0.39 1.23 16 7 N -0.72 -9.70 4.53 -54.93 -0.25 -9.95 16 8 C 0.54 10.18 7.68 -10.98 -0.08 10.10 16 9 O -0.51 -11.64 15.53 5.55 0.09 -11.56 16 10 C -0.13 -2.64 6.16 36.01 0.22 -2.42 16 11 S -0.11 -3.12 19.60 -107.50 -2.11 -5.22 16 12 C -0.61 -17.63 9.50 30.94 0.29 -17.33 16 13 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 14 C 0.03 1.01 5.49 -17.43 -0.10 0.92 16 15 N -0.88 -27.76 13.67 55.49 0.76 -27.00 16 16 Si 1.09 25.18 29.92 -169.99 -5.09 20.09 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.09 -0.69 2.18 -90.62 -0.20 -0.89 16 21 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 22 C -0.12 -0.94 4.78 -26.73 -0.13 -1.06 16 23 C -0.11 -0.68 5.92 -26.73 -0.16 -0.84 16 24 C -0.14 -0.93 5.54 -26.73 -0.15 -1.08 16 25 C 0.09 0.69 2.61 -26.73 -0.07 0.62 16 26 H 0.06 0.39 7.79 -51.93 -0.40 -0.01 16 27 O -0.38 -3.34 10.35 -35.23 -0.36 -3.70 16 28 C 0.03 0.18 10.82 101.05 1.09 1.27 16 29 C -0.12 -1.01 4.33 -26.73 -0.12 -1.12 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 33 H 0.40 4.29 6.86 -40.82 -0.28 4.01 16 34 H 0.10 1.87 8.14 -51.91 -0.42 1.45 16 35 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 36 H 0.28 8.92 7.12 -40.82 -0.29 8.63 16 37 H 0.07 0.59 7.22 -51.93 -0.37 0.22 16 38 H 0.07 0.50 6.50 -51.93 -0.34 0.16 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.37 7.87 -51.93 -0.41 -0.03 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.04 0.21 8.09 -51.93 -0.42 -0.21 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.04 0.19 7.87 -51.93 -0.41 -0.22 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.93 5.33 -51.93 -0.28 0.66 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -37.56 391.91 -7.37 -44.93 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.45 Total: 1.96 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 1.73 Total: -2.25 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.51 Total: -36.95 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.87 Total: -28.47 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.09 Total: 20.09 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.11 Total: -5.22 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.56 -7.37 -44.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570636599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.660 kcal (2) G-P(sol) polarization free energy of solvation -37.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds