Wall clock time and date at job start Wed Apr 1 2020 03:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 117.00296 * 2 1 4 4 O 1.20830 * 119.99787 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99982 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.46890 * 299.99809 * 5 3 2 7 7 N 1.46500 * 109.46839 * 179.97438 * 5 3 2 8 8 C 1.34775 * 119.99893 * 84.99863 * 7 5 3 9 9 O 1.21284 * 120.00295 * 0.02562 * 8 7 5 10 10 C 1.50708 * 119.99957 * 179.97438 * 8 7 5 11 11 S 1.80998 * 109.47052 * 180.02562 * 10 8 7 12 12 C 1.76199 * 100.00013 * 180.02562 * 11 10 8 13 13 H 1.07991 * 119.99794 * 0.02562 * 12 11 10 14 14 C 1.38798 * 119.99771 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00311 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99653 * 180.02562 * 14 12 11 17 17 H 1.48511 * 109.47049 * 269.99633 * 16 14 12 18 18 H 1.48494 * 109.47357 * 29.99707 * 16 14 12 19 19 H 1.48502 * 109.47120 * 150.00426 * 16 14 12 20 20 C 1.52997 * 109.46975 * 60.00499 * 5 3 2 21 21 H 1.09000 * 109.47187 * 180.02562 * 20 5 3 22 22 C 1.52995 * 109.47776 * 59.99545 * 20 5 3 23 23 C 1.53001 * 109.47508 * 179.97438 * 22 20 5 24 24 C 1.53005 * 109.46826 * 60.00270 * 23 22 20 25 25 C 1.53005 * 109.47111 * 299.99845 * 24 23 22 26 26 H 1.08994 * 109.46926 * 300.00232 * 25 24 23 27 27 O 1.42893 * 109.47130 * 179.97438 * 25 24 23 28 28 C 1.42897 * 113.99825 * 90.00148 * 27 25 24 29 29 C 1.53002 * 109.46939 * 60.00032 * 25 24 23 30 30 H 1.09001 * 109.46703 * 60.00003 * 1 2 3 31 31 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47084 * 300.00061 * 1 2 3 33 33 H 0.97002 * 120.00447 * 264.99989 * 7 5 3 34 34 H 1.09005 * 109.46512 * 60.00633 * 10 8 7 35 35 H 1.08991 * 109.47135 * 300.00153 * 10 8 7 36 36 H 0.97001 * 119.99662 * 359.97438 * 15 14 12 37 37 H 1.09000 * 109.47274 * 300.00573 * 22 20 5 38 38 H 1.09001 * 109.46999 * 60.00010 * 22 20 5 39 39 H 1.09004 * 109.46849 * 300.00340 * 23 22 20 40 40 H 1.09003 * 109.47289 * 180.02562 * 23 22 20 41 41 H 1.08995 * 109.47060 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.46758 * 59.99930 * 24 23 22 43 43 H 1.09001 * 109.47204 * 60.00276 * 28 27 25 44 44 H 1.09006 * 109.47024 * 180.02562 * 28 27 25 45 45 H 1.09000 * 109.47208 * 299.99982 * 28 27 25 46 46 H 1.08997 * 109.47397 * 179.97438 * 29 25 24 47 47 H 1.09004 * 109.47190 * 60.00152 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9564 0.7805 0.8892 7 7 3.9818 2.6796 -0.0011 8 6 4.0757 3.3550 1.1615 9 8 3.8168 2.7996 2.2081 10 6 4.5036 4.8000 1.1610 11 16 4.5332 5.4210 2.8609 12 6 5.0500 7.0804 2.5715 13 1 5.2407 7.4186 1.5638 14 6 5.2118 7.9530 3.6387 15 7 4.9797 7.5407 4.8671 16 14 5.7590 9.7125 3.3318 17 1 7.2418 9.7837 3.3707 18 1 5.2769 10.1555 1.9990 19 1 5.1933 10.5971 4.3820 20 6 4.1129 0.5815 -1.2502 21 1 5.2014 0.6381 -1.2505 22 6 3.5654 1.2753 -2.4991 23 6 4.1124 0.5824 -3.7487 24 6 3.6790 -0.8850 -3.7492 25 6 4.2266 -1.5789 -2.5003 26 1 5.3150 -1.5215 -2.5005 27 8 3.8213 -2.9491 -2.5004 28 6 4.7404 -3.8269 -3.1536 29 6 3.6796 -0.8859 -1.2506 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.1892 3.1238 -0.8381 34 1 3.7993 5.3872 0.5716 35 1 5.4997 4.8839 0.7266 36 1 4.6953 6.6271 5.0264 37 1 2.4768 1.2183 -2.4987 38 1 3.8744 2.3206 -2.4990 39 1 5.2009 0.6398 -3.7489 40 1 3.7226 1.0770 -4.6385 41 1 4.0690 -1.3788 -4.6391 42 1 2.5905 -0.9423 -3.7489 43 1 5.7077 -3.7777 -2.6537 44 1 4.3605 -4.8478 -3.1111 45 1 4.8536 -3.5250 -4.1948 46 1 4.0693 -1.3804 -0.3609 47 1 2.5911 -0.9433 -1.2504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570636599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:51 Heat of formation + Delta-G solvation = -210.496480 kcal Electronic energy + Delta-G solvation = -28954.788781 eV Core-core repulsion = 24841.443772 eV Total energy + Delta-G solvation = -4113.345008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.29719 -40.56545 -40.08983 -37.97958 -37.59151 -35.66685 -34.75150 -33.01170 -31.27962 -30.55505 -29.16151 -27.41630 -27.22810 -26.84221 -23.76089 -23.34063 -22.28137 -21.58658 -20.89437 -20.46264 -18.75852 -18.54275 -18.11732 -17.51928 -17.48572 -16.96047 -16.60030 -16.41746 -16.00783 -15.96012 -15.69925 -15.52043 -15.13171 -14.91374 -14.65011 -14.60804 -14.49820 -14.12684 -13.95138 -13.79796 -13.71072 -13.22380 -13.12389 -12.92518 -12.74522 -12.59159 -12.25865 -12.08862 -11.94634 -11.82933 -11.73359 -11.60014 -11.51822 -11.41786 -11.30188 -11.21256 -11.10714 -10.53114 -10.34766 -10.33964 -8.93119 -8.88123 -6.28305 1.02065 1.04351 1.26460 1.51174 1.61559 1.70491 1.79947 2.08075 2.33630 2.81393 3.01996 3.11072 3.31372 3.52068 3.67035 3.73830 3.92922 4.01487 4.07742 4.14084 4.19749 4.23452 4.24736 4.34031 4.37092 4.38891 4.45071 4.52751 4.56926 4.59401 4.63006 4.66002 4.90189 4.95509 5.02648 5.07983 5.10041 5.20201 5.20766 5.27904 5.35943 5.47622 5.64499 6.14159 6.21707 6.35934 6.58099 6.98144 7.05864 8.50338 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.002342 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.792832 B =11954.481636 C =12549.812196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.347 6.347 3 C 0.449 3.551 4 O -0.532 6.532 5 C 0.162 3.838 6 H 0.122 0.878 7 N -0.692 5.692 8 C 0.542 3.458 9 O -0.558 6.558 10 C -0.108 4.108 11 S -0.194 6.194 12 C -0.612 4.612 13 H 0.076 0.924 14 C -0.021 4.021 15 N -0.914 5.914 16 Si 1.140 2.860 17 H -0.265 1.265 18 H -0.263 1.263 19 H -0.280 1.280 20 C -0.072 4.072 21 H 0.122 0.878 22 C -0.125 4.125 23 C -0.107 4.107 24 C -0.139 4.139 25 C 0.094 3.906 26 H 0.076 0.924 27 O -0.408 6.408 28 C 0.025 3.975 29 C -0.121 4.121 30 H 0.064 0.936 31 H 0.135 0.865 32 H 0.049 0.951 33 H 0.422 0.578 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.260 0.740 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.050 0.950 46 H 0.074 0.926 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 -21.944 -24.176 32.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.262 6.262 3 C 0.291 3.709 4 O -0.421 6.421 5 C 0.054 3.946 6 H 0.139 0.861 7 N -0.348 5.348 8 C 0.328 3.672 9 O -0.435 6.435 10 C -0.260 4.260 11 S 0.032 5.968 12 C -0.759 4.759 13 H 0.095 0.905 14 C -0.224 4.224 15 N -0.549 5.549 16 Si 0.957 3.043 17 H -0.190 1.190 18 H -0.187 1.187 19 H -0.206 1.206 20 C -0.091 4.091 21 H 0.140 0.860 22 C -0.163 4.163 23 C -0.144 4.144 24 C -0.177 4.177 25 C 0.036 3.964 26 H 0.094 0.906 27 O -0.327 6.327 28 C -0.071 4.071 29 C -0.159 4.159 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.068 0.932 33 H 0.262 0.738 34 H 0.126 0.874 35 H 0.140 0.860 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.110 0.890 45 H 0.069 0.931 46 H 0.093 0.907 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.202 -21.254 -21.625 30.345 hybrid contribution -0.467 -0.434 -1.824 1.932 sum -1.669 -21.688 -23.449 31.985 Atomic orbital electron populations 1.23536 0.75496 1.05686 1.02112 1.86601 1.24421 1.31848 1.83372 1.24688 0.93170 0.81675 0.71327 1.90686 1.67659 1.37633 1.46111 1.20713 0.86028 0.83761 1.04049 0.86071 1.45482 1.68791 1.11244 1.09281 1.20106 0.75566 0.87801 0.83697 1.90699 1.49779 1.69934 1.33084 1.23194 1.06503 0.94798 1.01457 1.85076 1.90029 1.13468 1.08190 1.24048 1.56321 0.96651 0.98905 0.90538 1.27863 0.93511 1.09780 0.91204 1.70892 1.42459 1.19440 1.22095 0.82678 0.77253 0.67917 0.76411 1.19029 1.18740 1.20572 1.21339 1.02910 0.94446 0.90401 0.86041 1.21747 1.00124 1.00070 0.94312 1.21419 1.01992 0.94073 0.96941 1.22028 1.01447 0.96126 0.98071 1.22105 0.98718 0.81097 0.94462 0.90634 1.87888 1.48274 1.17918 1.78651 1.22940 0.93140 0.94346 0.96686 1.21787 1.03534 0.92476 0.98090 0.91691 0.84688 0.93204 0.73838 0.87422 0.85954 0.92879 0.93268 0.90436 0.89856 0.90479 0.90788 0.92331 0.93253 0.89040 0.93149 0.90701 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -7.99 7.49 -51.41 -0.38 -8.38 16 3 C 0.45 12.42 5.96 71.24 0.42 12.85 16 4 O -0.53 -18.75 16.07 21.95 0.35 -18.40 16 5 C 0.16 3.72 2.35 44.24 0.10 3.83 16 6 H 0.12 3.04 7.58 -2.39 -0.02 3.03 16 7 N -0.69 -17.77 4.53 -446.09 -2.02 -19.79 16 8 C 0.54 20.26 7.68 87.66 0.67 20.93 16 9 O -0.56 -25.93 15.53 -3.04 -0.05 -25.97 16 10 C -0.11 -4.34 6.16 71.24 0.44 -3.90 16 11 S -0.19 -10.84 19.60 -56.49 -1.11 -11.95 16 12 C -0.61 -35.51 9.50 67.95 0.65 -34.86 16 13 H 0.08 4.15 7.80 -2.92 -0.02 4.13 16 14 C -0.02 -1.20 5.49 84.86 0.47 -0.74 16 15 N -0.91 -58.58 13.67 21.65 0.30 -58.29 16 16 Si 1.14 49.66 29.92 68.60 2.05 51.71 16 17 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 C -0.07 -1.02 2.18 -10.79 -0.02 -1.04 16 21 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 22 C -0.12 -1.59 4.78 30.59 0.15 -1.45 16 23 C -0.11 -0.95 5.92 30.60 0.18 -0.77 16 24 C -0.14 -1.50 5.54 30.60 0.17 -1.33 16 25 C 0.09 1.17 2.61 30.60 0.08 1.25 16 26 H 0.08 0.72 7.79 -2.39 -0.02 0.71 16 27 O -0.41 -6.43 10.35 -148.98 -1.54 -7.97 16 28 C 0.02 0.24 10.82 113.37 1.23 1.47 16 29 C -0.12 -1.80 4.33 30.60 0.13 -1.67 16 30 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 31 H 0.14 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 33 H 0.42 7.89 6.86 -92.71 -0.64 7.25 16 34 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 35 H 0.12 4.23 8.14 -2.40 -0.02 4.21 16 36 H 0.26 17.38 7.12 -92.71 -0.66 16.72 16 37 H 0.05 0.81 7.22 -2.39 -0.02 0.80 16 38 H 0.08 0.88 6.50 -2.39 -0.02 0.86 16 39 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.66 7.87 -2.39 -0.02 0.64 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.05 0.39 8.09 -2.39 -0.02 0.37 16 44 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.05 0.37 7.87 -2.39 -0.02 0.35 16 46 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 47 H 0.09 1.53 5.33 -2.39 -0.01 1.52 16 Total: -1.00 -84.54 391.91 3.91 -80.63 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.45 Total: 22.19 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 5.86 Total: -3.78 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -1.72 Total: -78.08 kcal Atomic # 8 Polarization: -59.10 SS G_CDS: -1.62 Total: -60.72 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.71 kcal Atomic # 16 Polarization: -10.84 SS G_CDS: -1.11 Total: -11.95 kcal Total: -84.54 3.91 -80.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570636599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.868 kcal (2) G-P(sol) polarization free energy of solvation -84.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds