Wall clock time and date at job start Wed Apr 1 2020 02:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.95306 * 2 1 4 4 O 1.43425 * 109.86091 * 238.97001 * 2 1 3 5 5 C 1.43714 * 109.93521 * 242.73867 * 4 2 1 6 6 C 1.55061 * 105.20612 * 335.68232 * 5 4 2 7 7 C 1.53646 * 109.86307 * 121.02482 * 2 1 3 8 8 C 1.52445 * 110.69319 * 257.81618 * 7 2 1 9 9 N 1.47318 * 108.39569 * 174.24459 * 8 7 2 10 10 S 1.65600 * 121.07129 * 130.68521 * 9 8 7 11 11 O 1.42096 * 104.27571 * 333.92177 * 10 9 8 12 12 O 1.42103 * 104.27745 * 206.06765 * 10 9 8 13 13 C 1.81392 * 104.45203 * 89.99584 * 10 9 8 14 14 C 1.53002 * 109.47232 * 176.33876 * 13 10 9 15 15 C 1.50697 * 115.55022 * 65.04129 * 14 13 10 16 16 H 1.08002 * 120.00000 * 264.75856 * 15 14 13 17 17 C 1.37878 * 120.00098 * 84.75877 * 15 14 13 18 18 N 1.31523 * 119.99777 * 353.94243 * 17 15 14 19 19 Si 1.86797 * 120.00332 * 173.94576 * 17 15 14 20 20 H 1.48503 * 109.47089 * 89.99811 * 19 17 15 21 21 H 1.48499 * 109.47300 * 209.99937 * 19 17 15 22 22 H 1.48497 * 109.46917 * 329.99917 * 19 17 15 23 23 C 1.52997 * 117.49777 * 279.37022 * 14 13 10 24 24 C 1.53002 * 117.49914 * 210.71311 * 14 13 10 25 25 C 1.47165 * 117.86442 * 310.95089 * 9 8 7 26 26 C 1.52859 * 108.77841 * 50.86023 * 25 9 8 27 27 O 1.41981 * 111.02718 * 21.91565 * 7 2 1 28 28 H 1.09004 * 109.46824 * 298.97036 * 1 2 3 29 29 H 1.08991 * 109.47284 * 58.97368 * 1 2 3 30 30 H 1.09001 * 109.46936 * 178.97432 * 1 2 3 31 31 H 1.09001 * 110.29620 * 216.75112 * 5 4 2 32 32 H 1.08993 * 110.29544 * 94.61350 * 5 4 2 33 33 H 1.08997 * 111.14116 * 277.86731 * 6 5 4 34 34 H 1.09000 * 111.13853 * 153.67120 * 6 5 4 35 35 H 1.08995 * 109.68573 * 54.51169 * 8 7 2 36 36 H 1.09005 * 109.70823 * 293.98035 * 8 7 2 37 37 H 1.09004 * 109.47426 * 56.33730 * 13 10 9 38 38 H 1.09004 * 109.47350 * 296.33708 * 13 10 9 39 39 H 0.96998 * 119.99310 * 185.03361 * 18 17 15 40 40 H 1.09008 * 117.50041 * 0.02562 * 23 14 13 41 41 H 1.08999 * 117.50141 * 145.01725 * 23 14 13 42 42 H 1.08996 * 117.49872 * 214.97810 * 24 14 13 43 43 H 1.09007 * 117.49643 * 359.97245 * 24 14 13 44 44 H 1.08997 * 109.62699 * 170.63220 * 25 9 8 45 45 H 1.09003 * 109.62493 * 291.19593 * 25 9 8 46 46 H 1.09004 * 109.58124 * 187.29203 * 26 25 9 47 47 H 1.08990 * 109.40970 * 67.20919 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9020 1.0246 0.0000 4 8 2.0173 -0.6954 -1.1559 5 6 2.7658 -1.8536 -0.7516 6 6 3.2576 -1.5390 0.6849 7 6 2.0521 -0.7448 1.2383 8 6 2.5182 0.2414 2.3033 9 7 2.8760 -0.5171 3.5145 10 16 4.3174 -0.2611 4.2886 11 8 5.1802 0.2263 3.2703 12 8 4.5842 -1.4911 4.9483 13 6 3.9572 1.0437 5.4961 14 6 5.2013 1.3096 6.3461 15 6 6.3867 1.8721 5.6049 16 1 7.1587 1.2108 5.2398 17 6 6.4859 3.2308 5.3928 18 7 5.4920 4.0233 5.7305 19 14 8.0316 3.9462 4.6258 20 1 7.8823 3.9777 3.1487 21 1 8.2420 5.3265 5.1316 22 1 9.1993 3.1031 4.9875 23 6 5.4826 0.3520 7.5056 24 6 4.9859 1.7719 7.7886 25 6 1.9140 -1.5139 4.0111 26 6 1.5121 -2.4288 2.8543 27 8 1.0688 -1.6309 1.7520 28 1 -0.3633 0.4978 0.8991 29 1 -0.3633 0.5296 -0.8806 30 1 -0.3633 -1.0275 -0.0184 31 1 3.6154 -2.0061 -1.4172 32 1 2.1250 -2.7353 -0.7472 33 1 4.1579 -0.9250 0.6666 34 1 3.4199 -2.4543 1.2541 35 1 1.7147 0.9412 2.5325 36 1 3.3892 0.7881 1.9420 37 1 3.1378 0.7260 6.1409 38 1 3.6738 1.9562 4.9715 39 1 5.5307 4.9683 5.5152 40 1 4.7815 -0.4679 7.6627 41 1 6.5251 0.1289 7.7326 42 1 5.7017 2.4825 8.2016 43 1 3.9577 1.8869 8.1320 44 1 2.3754 -2.1062 4.8012 45 1 1.0295 -1.0080 4.3982 46 1 0.7054 -3.0887 3.1737 47 1 2.3715 -3.0257 2.5492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574520683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:17 Heat of formation + Delta-G solvation = -124.067433 kcal Electronic energy + Delta-G solvation = -30889.897906 eV Core-core repulsion = 26780.300743 eV Total energy + Delta-G solvation = -4109.597163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.85582 -37.91302 -36.82308 -36.45378 -35.27683 -34.75750 -32.67016 -32.09056 -31.54941 -29.19883 -28.25001 -26.85171 -25.49725 -24.59142 -23.34288 -21.56001 -21.27396 -20.02132 -19.58734 -18.48311 -17.44508 -17.21073 -16.68479 -16.39258 -15.82354 -15.59231 -15.11377 -14.83736 -14.76029 -14.68835 -14.26796 -14.21992 -13.96356 -13.82323 -13.27382 -13.15982 -12.73627 -12.40259 -12.14229 -12.03723 -11.90276 -11.85591 -11.75399 -11.61518 -11.39759 -11.18555 -11.14577 -11.08010 -10.99623 -10.97392 -10.64948 -10.52529 -10.33593 -10.24221 -10.13839 -9.75330 -9.64920 -9.03581 -8.79423 -8.61507 -8.13370 -6.18640 -4.29827 0.88161 3.11192 3.27441 3.33192 3.38059 3.38797 3.69801 4.24794 4.33051 4.45357 4.49244 4.64121 4.74025 4.81321 4.88785 5.06697 5.08239 5.09531 5.13470 5.18952 5.25696 5.28310 5.36819 5.43355 5.54774 5.58246 5.60291 5.66344 5.73287 5.86038 5.87187 5.93616 5.94614 6.06076 6.19164 6.24135 6.30697 6.54420 6.59298 6.65582 6.83344 6.93098 7.05348 7.17300 7.33891 7.75487 8.14243 8.75869 9.41749 10.89017 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014759 B = 0.004071 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.663644 B = 6877.109841 C = 7776.871175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.094 3.906 3 H 0.096 0.904 4 O -0.376 6.376 5 C 0.058 3.942 6 C -0.187 4.187 7 C 0.082 3.918 8 C 0.103 3.897 9 N -1.012 6.012 10 S 2.604 3.396 11 O -0.943 6.943 12 O -0.970 6.970 13 C -0.550 4.550 14 C 0.041 3.959 15 C -0.515 4.515 16 H 0.068 0.932 17 C 0.082 3.918 18 N -0.875 5.875 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.270 1.270 23 C -0.210 4.210 24 C -0.139 4.139 25 C 0.083 3.917 26 C 0.047 3.953 27 O -0.355 6.355 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.133 0.867 39 H 0.263 0.737 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.074 0.926 46 H 0.106 0.894 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.260 -9.396 -7.042 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.036 3.964 3 H 0.114 0.886 4 O -0.296 6.296 5 C -0.018 4.018 6 C -0.225 4.225 7 C 0.040 3.960 8 C -0.023 4.023 9 N -0.848 5.848 10 S 2.703 3.297 11 O -0.933 6.933 12 O -0.961 6.961 13 C -0.684 4.684 14 C 0.038 3.962 15 C -0.552 4.552 16 H 0.086 0.914 17 C -0.123 4.123 18 N -0.511 5.511 19 Si 0.718 3.282 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.247 4.247 24 C -0.178 4.178 25 C -0.043 4.043 26 C -0.031 4.031 27 O -0.274 6.274 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.151 0.849 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.122 0.878 45 H 0.092 0.908 46 H 0.124 0.876 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.716 -9.617 -7.478 16.225 hybrid contribution 0.489 0.891 0.387 1.088 sum -10.228 -8.726 -7.090 15.199 Atomic orbital electron populations 1.21875 0.93780 1.03217 1.01852 1.22624 0.95555 0.95714 0.82502 0.88640 1.88469 1.71486 1.40033 1.29613 1.23328 0.95030 0.88749 0.94725 1.23867 0.99345 1.02460 0.96834 1.22570 0.88721 0.90908 0.93791 1.21834 1.02586 0.93446 0.84458 1.58322 1.38126 1.49950 1.38399 1.05367 0.72321 0.76227 0.75784 1.93528 1.61707 1.82356 1.55735 1.93482 1.82692 1.42650 1.77231 1.30006 1.06864 1.16806 1.14707 1.18310 0.91640 0.99213 0.86991 1.20510 1.05011 0.92303 1.37357 0.91376 1.24954 0.96446 0.96804 0.94114 1.69983 1.31082 1.05212 1.44792 0.86576 0.83513 0.78244 0.79849 1.20000 1.21037 1.19411 1.23211 1.01132 0.93000 1.07344 1.22547 0.99393 0.95236 1.00613 1.21961 0.93646 0.91128 0.97593 1.22936 1.00810 0.92859 0.86471 1.87809 1.36990 1.53929 1.48640 0.91359 0.92286 0.91395 0.89583 0.92100 0.88360 0.89285 0.90527 0.87214 0.88393 0.84876 0.92691 0.90727 0.89480 0.89465 0.91519 0.87847 0.90818 0.87555 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.87 37.16 0.33 -1.22 16 2 C 0.09 1.11 3.76 -26.39 -0.10 1.01 16 3 H 0.10 1.05 7.78 -51.93 -0.40 0.64 16 4 O -0.38 -4.91 11.03 -35.23 -0.39 -5.30 16 5 C 0.06 0.66 7.78 38.25 0.30 0.96 16 6 C -0.19 -2.36 6.01 -24.80 -0.15 -2.51 16 7 C 0.08 1.02 0.70 -89.72 -0.06 0.95 16 8 C 0.10 1.40 5.22 -3.88 -0.02 1.38 16 9 N -1.01 -14.96 3.18 -113.65 -0.36 -15.32 16 10 S 2.60 50.59 5.24 -107.50 -0.56 50.03 16 11 O -0.94 -21.28 16.15 -57.54 -0.93 -22.21 16 12 O -0.97 -20.13 16.62 -57.54 -0.96 -21.09 16 13 C -0.55 -11.26 6.03 37.16 0.22 -11.03 16 14 C 0.04 0.98 1.33 -155.66 -0.21 0.77 16 15 C -0.51 -13.82 8.06 -34.44 -0.28 -14.10 16 16 H 0.07 1.88 7.82 -52.49 -0.41 1.46 16 17 C 0.08 2.19 5.39 -17.82 -0.10 2.10 16 18 N -0.88 -23.69 12.93 55.43 0.72 -22.97 16 19 Si 0.89 21.08 29.55 -169.99 -5.02 16.06 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.21 -4.51 9.96 -26.70 -0.27 -4.77 16 24 C -0.14 -3.11 9.44 -26.69 -0.25 -3.36 16 25 C 0.08 0.98 6.62 -3.75 -0.02 0.96 16 26 C 0.05 0.50 6.75 37.09 0.25 0.75 16 27 O -0.36 -4.20 8.63 -35.23 -0.30 -4.50 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.75 7.49 -51.93 -0.39 0.36 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.35 7.85 -51.93 -0.41 0.95 16 34 H 0.09 1.09 6.02 -51.93 -0.31 0.78 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.11 1.61 6.66 -51.93 -0.35 1.27 16 37 H 0.10 1.69 8.09 -51.92 -0.42 1.27 16 38 H 0.13 2.84 8.14 -51.92 -0.42 2.42 16 39 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 40 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 41 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 42 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.10 1.23 6.88 -51.93 -0.36 0.87 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.06 0.64 6.16 -51.93 -0.32 0.32 16 LS Contribution 381.35 15.07 5.75 5.75 Total: -1.00 -31.81 381.35 -9.99 -41.80 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.58 Total: 5.88 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: -0.35 Total: -28.12 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.36 Total: -38.29 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -2.58 Total: -53.10 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 50.59 SS G_CDS: -0.56 Total: 50.03 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.81 -9.99 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574520683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.265 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds