Wall clock time and date at job start Wed Apr 1 2020 02:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.95306 * 2 1 4 4 O 1.43425 * 109.86091 * 238.97001 * 2 1 3 5 5 C 1.43714 * 109.93521 * 242.73867 * 4 2 1 6 6 C 1.55061 * 105.20612 * 335.68232 * 5 4 2 7 7 C 1.53646 * 109.86307 * 121.02482 * 2 1 3 8 8 C 1.52445 * 110.69319 * 257.81618 * 7 2 1 9 9 N 1.47318 * 108.39569 * 174.24459 * 8 7 2 10 10 S 1.65600 * 121.07129 * 130.68521 * 9 8 7 11 11 O 1.42096 * 104.27571 * 333.92177 * 10 9 8 12 12 O 1.42103 * 104.27745 * 206.06765 * 10 9 8 13 13 C 1.81392 * 104.45203 * 89.99584 * 10 9 8 14 14 C 1.53002 * 109.47232 * 176.33876 * 13 10 9 15 15 C 1.50697 * 115.55022 * 65.04129 * 14 13 10 16 16 H 1.08002 * 120.00000 * 264.75856 * 15 14 13 17 17 C 1.37878 * 120.00098 * 84.75877 * 15 14 13 18 18 N 1.31523 * 119.99777 * 353.94243 * 17 15 14 19 19 Si 1.86797 * 120.00332 * 173.94576 * 17 15 14 20 20 H 1.48503 * 109.47089 * 89.99811 * 19 17 15 21 21 H 1.48499 * 109.47300 * 209.99937 * 19 17 15 22 22 H 1.48497 * 109.46917 * 329.99917 * 19 17 15 23 23 C 1.52997 * 117.49777 * 279.37022 * 14 13 10 24 24 C 1.53002 * 117.49914 * 210.71311 * 14 13 10 25 25 C 1.47165 * 117.86442 * 310.95089 * 9 8 7 26 26 C 1.52859 * 108.77841 * 50.86023 * 25 9 8 27 27 O 1.41981 * 111.02718 * 21.91565 * 7 2 1 28 28 H 1.09004 * 109.46824 * 298.97036 * 1 2 3 29 29 H 1.08991 * 109.47284 * 58.97368 * 1 2 3 30 30 H 1.09001 * 109.46936 * 178.97432 * 1 2 3 31 31 H 1.09001 * 110.29620 * 216.75112 * 5 4 2 32 32 H 1.08993 * 110.29544 * 94.61350 * 5 4 2 33 33 H 1.08997 * 111.14116 * 277.86731 * 6 5 4 34 34 H 1.09000 * 111.13853 * 153.67120 * 6 5 4 35 35 H 1.08995 * 109.68573 * 54.51169 * 8 7 2 36 36 H 1.09005 * 109.70823 * 293.98035 * 8 7 2 37 37 H 1.09004 * 109.47426 * 56.33730 * 13 10 9 38 38 H 1.09004 * 109.47350 * 296.33708 * 13 10 9 39 39 H 0.96998 * 119.99310 * 185.03361 * 18 17 15 40 40 H 1.09008 * 117.50041 * 0.02562 * 23 14 13 41 41 H 1.08999 * 117.50141 * 145.01725 * 23 14 13 42 42 H 1.08996 * 117.49872 * 214.97810 * 24 14 13 43 43 H 1.09007 * 117.49643 * 359.97245 * 24 14 13 44 44 H 1.08997 * 109.62699 * 170.63220 * 25 9 8 45 45 H 1.09003 * 109.62493 * 291.19593 * 25 9 8 46 46 H 1.09004 * 109.58124 * 187.29203 * 26 25 9 47 47 H 1.08990 * 109.40970 * 67.20919 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9020 1.0246 0.0000 4 8 2.0173 -0.6954 -1.1559 5 6 2.7658 -1.8536 -0.7516 6 6 3.2576 -1.5390 0.6849 7 6 2.0521 -0.7448 1.2383 8 6 2.5182 0.2414 2.3033 9 7 2.8760 -0.5171 3.5145 10 16 4.3174 -0.2611 4.2886 11 8 5.1802 0.2263 3.2703 12 8 4.5842 -1.4911 4.9483 13 6 3.9572 1.0437 5.4961 14 6 5.2013 1.3096 6.3461 15 6 6.3867 1.8721 5.6049 16 1 7.1587 1.2108 5.2398 17 6 6.4859 3.2308 5.3928 18 7 5.4920 4.0233 5.7305 19 14 8.0316 3.9462 4.6258 20 1 7.8823 3.9777 3.1487 21 1 8.2420 5.3265 5.1316 22 1 9.1993 3.1031 4.9875 23 6 5.4826 0.3520 7.5056 24 6 4.9859 1.7719 7.7886 25 6 1.9140 -1.5139 4.0111 26 6 1.5121 -2.4288 2.8543 27 8 1.0688 -1.6309 1.7520 28 1 -0.3633 0.4978 0.8991 29 1 -0.3633 0.5296 -0.8806 30 1 -0.3633 -1.0275 -0.0184 31 1 3.6154 -2.0061 -1.4172 32 1 2.1250 -2.7353 -0.7472 33 1 4.1579 -0.9250 0.6666 34 1 3.4199 -2.4543 1.2541 35 1 1.7147 0.9412 2.5325 36 1 3.3892 0.7881 1.9420 37 1 3.1378 0.7260 6.1409 38 1 3.6738 1.9562 4.9715 39 1 5.5307 4.9683 5.5152 40 1 4.7815 -0.4679 7.6627 41 1 6.5251 0.1289 7.7326 42 1 5.7017 2.4825 8.2016 43 1 3.9577 1.8869 8.1320 44 1 2.3754 -2.1062 4.8012 45 1 1.0295 -1.0080 4.3982 46 1 0.7054 -3.0887 3.1737 47 1 2.3715 -3.0257 2.5492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574520683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:16 Heat of formation + Delta-G solvation = -146.012989 kcal Electronic energy + Delta-G solvation = -30890.849537 eV Core-core repulsion = 26780.300743 eV Total energy + Delta-G solvation = -4110.548794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.80689 -38.87433 -38.59482 -38.07004 -36.87023 -35.85989 -34.10551 -33.61184 -32.45683 -30.16218 -29.86537 -27.90084 -27.45416 -25.54147 -24.32029 -23.02249 -22.50385 -21.43159 -20.97057 -19.81810 -18.81737 -18.43763 -18.13115 -17.57620 -17.06123 -16.84440 -16.68511 -16.43893 -15.96567 -15.69626 -15.67087 -15.37674 -15.25272 -14.90108 -14.87235 -14.14680 -13.79034 -13.71422 -13.64785 -13.49098 -13.20472 -13.13436 -13.01910 -12.94261 -12.88413 -12.80702 -12.65839 -12.50212 -12.45452 -12.25272 -12.04079 -11.95510 -11.90933 -11.60716 -11.31995 -11.17015 -10.92130 -10.57246 -10.56329 -10.10678 -9.68935 -8.21555 -6.36418 -0.63258 1.36783 1.39401 1.47548 1.78076 2.37523 2.49052 2.78236 2.93008 3.04847 3.19360 3.35097 3.39837 3.50611 3.66968 3.80025 3.95057 4.02565 4.13844 4.17145 4.22861 4.30859 4.31672 4.38284 4.45511 4.48692 4.55452 4.59431 4.62467 4.70837 4.74857 4.80666 4.87449 4.92825 4.94423 5.00405 5.06282 5.11184 5.18389 5.41549 5.43045 5.49804 5.56354 5.69261 5.92622 6.13996 6.19577 6.69795 7.36134 8.85555 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014759 B = 0.004071 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.663644 B = 6877.109841 C = 7776.871175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.089 3.911 3 H 0.099 0.901 4 O -0.392 6.392 5 C 0.060 3.940 6 C -0.193 4.193 7 C 0.087 3.913 8 C 0.096 3.904 9 N -1.004 6.004 10 S 2.621 3.379 11 O -0.983 6.983 12 O -0.986 6.986 13 C -0.551 4.551 14 C 0.008 3.992 15 C -0.532 4.532 16 H 0.048 0.952 17 C 0.043 3.957 18 N -0.893 5.893 19 Si 0.933 3.067 20 H -0.276 1.276 21 H -0.273 1.273 22 H -0.270 1.270 23 C -0.197 4.197 24 C -0.137 4.137 25 C 0.073 3.927 26 C 0.044 3.956 27 O -0.353 6.353 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.266 0.734 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.142 0.858 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.259 -10.294 -7.045 18.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.031 3.969 3 H 0.117 0.883 4 O -0.312 6.312 5 C -0.016 4.016 6 C -0.231 4.231 7 C 0.045 3.955 8 C -0.029 4.029 9 N -0.843 5.843 10 S 2.720 3.280 11 O -0.974 6.974 12 O -0.976 6.976 13 C -0.684 4.684 14 C 0.006 3.994 15 C -0.569 4.569 16 H 0.066 0.934 17 C -0.159 4.159 18 N -0.529 5.529 19 Si 0.759 3.241 20 H -0.202 1.202 21 H -0.198 1.198 22 H -0.194 1.194 23 C -0.234 4.234 24 C -0.177 4.177 25 C -0.052 4.052 26 C -0.033 4.033 27 O -0.272 6.272 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.149 0.851 38 H 0.138 0.862 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.122 0.878 45 H 0.117 0.883 46 H 0.160 0.840 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.705 -10.515 -7.461 18.101 hybrid contribution 1.080 1.104 0.390 1.593 sum -11.625 -9.411 -7.071 16.544 Atomic orbital electron populations 1.21830 0.92416 1.03107 1.02672 1.22755 0.96617 0.95707 0.81853 0.88306 1.88446 1.71786 1.40645 1.30352 1.23402 0.95503 0.88662 0.94042 1.23866 0.98880 1.02293 0.98013 1.22471 0.88746 0.90741 0.93542 1.22000 1.02541 0.94098 0.84286 1.57905 1.37505 1.50667 1.38239 1.04547 0.72912 0.75420 0.75127 1.93475 1.64116 1.82882 1.56894 1.93450 1.83601 1.42915 1.77650 1.29914 1.06353 1.16893 1.15193 1.18443 0.92209 1.00978 0.87789 1.20679 1.05941 0.92484 1.37789 0.93390 1.25498 0.98540 0.97153 0.94751 1.70024 1.32011 1.05352 1.45524 0.85924 0.81064 0.78118 0.79029 1.20184 1.19838 1.19422 1.23258 1.01587 0.93237 1.05312 1.22503 1.00075 0.95376 0.99699 1.22327 0.93623 0.90906 0.98308 1.23142 1.02030 0.92631 0.85507 1.87822 1.36570 1.53779 1.48985 0.90401 0.91619 0.91882 0.88508 0.90955 0.90342 0.89103 0.88398 0.89039 0.85095 0.86151 0.92522 0.88161 0.89953 0.91557 0.89372 0.87751 0.88260 0.84042 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.87 71.98 0.64 -2.00 16 2 C 0.09 1.97 3.76 30.81 0.12 2.08 16 3 H 0.10 2.09 7.78 -2.39 -0.02 2.07 16 4 O -0.39 -9.79 11.03 -148.98 -1.64 -11.43 16 5 C 0.06 1.30 7.78 72.69 0.57 1.86 16 6 C -0.19 -4.77 6.01 31.85 0.19 -4.58 16 7 C 0.09 2.04 0.70 -10.21 -0.01 2.03 16 8 C 0.10 2.52 5.22 86.04 0.45 2.97 16 9 N -1.00 -28.28 3.18 -513.49 -1.63 -29.92 16 10 S 2.62 101.01 5.24 -56.49 -0.30 100.71 16 11 O -0.98 -45.59 16.15 -127.65 -2.06 -47.65 16 12 O -0.99 -40.11 16.62 -127.65 -2.12 -42.23 16 13 C -0.55 -22.06 6.03 71.98 0.43 -21.62 16 14 C 0.01 0.38 1.33 -52.93 -0.07 0.31 16 15 C -0.53 -29.08 8.06 25.60 0.21 -28.87 16 16 H 0.05 2.74 7.82 -2.91 -0.02 2.71 16 17 C 0.04 2.36 5.39 84.65 0.46 2.81 16 18 N -0.89 -48.64 12.93 21.45 0.28 -48.37 16 19 Si 0.93 43.63 29.55 68.60 2.03 45.66 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 23 C -0.20 -8.25 9.96 30.62 0.30 -7.95 16 24 C -0.14 -6.05 9.44 30.62 0.29 -5.76 16 25 C 0.07 1.52 6.62 86.21 0.57 2.10 16 26 C 0.04 0.80 6.75 71.94 0.49 1.29 16 27 O -0.35 -7.38 8.63 -148.97 -1.29 -8.67 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.23 7.49 -2.39 -0.02 1.21 16 31 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 2.24 7.85 -2.39 -0.02 2.22 16 34 H 0.09 2.17 6.02 -2.39 -0.01 2.15 16 35 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.09 2.75 6.66 -2.38 -0.02 2.73 16 37 H 0.13 4.21 8.09 -2.39 -0.02 4.19 16 38 H 0.12 5.12 8.14 -2.39 -0.02 5.10 16 39 H 0.27 13.75 8.32 -92.71 -0.77 12.98 16 40 H 0.10 3.65 8.14 -2.38 -0.02 3.63 16 41 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 42 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 43 H 0.09 3.44 8.14 -2.38 -0.02 3.42 16 44 H 0.10 2.20 6.88 -2.39 -0.02 2.18 16 45 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.14 1.59 8.14 -2.38 -0.02 1.57 16 47 H 0.05 1.04 6.16 -2.39 -0.01 1.03 16 Total: -1.00 -68.44 381.35 -1.15 -69.59 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.96 Total: 27.64 kcal Atomic # 6 Polarization: -59.97 SS G_CDS: 4.63 Total: -55.34 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -1.36 Total: -78.28 kcal Atomic # 8 Polarization: -102.87 SS G_CDS: -7.11 Total: -109.98 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 101.01 SS G_CDS: -0.30 Total: 100.71 kcal Total: -68.44 -1.15 -69.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574520683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.422 kcal (2) G-P(sol) polarization free energy of solvation -68.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds