Wall clock time and date at job start Wed Apr 1 2020 03:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00410 * 2 1 4 4 O 1.20830 * 119.99649 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00308 * 180.02562 * 3 2 1 6 6 C 1.52993 * 109.47200 * 186.51796 * 5 3 2 7 7 H 1.09000 * 109.58648 * 296.84092 * 6 5 3 8 8 C 1.53187 * 109.70825 * 57.19945 * 6 5 3 9 9 C 1.53107 * 109.33623 * 174.49098 * 8 6 5 10 10 C 1.53043 * 109.50187 * 298.66401 * 9 8 6 11 11 C 1.53186 * 109.34372 * 61.34391 * 10 9 8 12 12 N 1.46927 * 109.58855 * 176.56474 * 6 5 3 13 13 S 1.65602 * 120.62827 * 6.47874 * 12 6 5 14 14 O 1.42097 * 104.27935 * 37.76486 * 13 12 6 15 15 O 1.42106 * 104.27761 * 165.62485 * 13 12 6 16 16 C 1.81401 * 104.44958 * 281.69373 * 13 12 6 17 17 C 1.53001 * 109.47247 * 173.90927 * 16 13 12 18 18 C 1.50707 * 115.54793 * 40.05515 * 17 16 13 19 19 H 1.07996 * 119.99883 * 273.35886 * 18 17 16 20 20 C 1.37875 * 119.99793 * 93.36732 * 18 17 16 21 21 N 1.31517 * 120.00080 * 4.51281 * 20 18 17 22 22 Si 1.86793 * 119.99950 * 184.51367 * 20 18 17 23 23 H 1.48504 * 109.47080 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47353 * 119.99668 * 22 20 18 25 25 H 1.48500 * 109.47442 * 239.99807 * 22 20 18 26 26 C 1.52995 * 117.49937 * 254.35156 * 17 16 13 27 27 C 1.52999 * 117.50065 * 185.72536 * 17 16 13 28 28 H 1.08997 * 109.47766 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47087 * 300.00630 * 1 2 3 30 30 H 1.09002 * 109.47401 * 60.00087 * 1 2 3 31 31 H 1.09004 * 109.47205 * 66.51233 * 5 3 2 32 32 H 1.09003 * 109.46961 * 306.51902 * 5 3 2 33 33 H 1.08999 * 109.49783 * 294.44654 * 8 6 5 34 34 H 1.09007 * 109.49294 * 54.50803 * 8 6 5 35 35 H 1.08991 * 109.50595 * 178.63208 * 9 8 6 36 36 H 1.09006 * 109.44845 * 58.65053 * 9 8 6 37 37 H 1.09004 * 109.49370 * 301.37077 * 10 9 8 38 38 H 1.09003 * 109.49461 * 181.31299 * 10 9 8 39 39 H 1.09003 * 109.58734 * 65.13715 * 11 10 9 40 40 H 1.08998 * 109.58481 * 185.56489 * 11 10 9 41 41 H 1.09000 * 109.47220 * 293.90810 * 16 13 12 42 42 H 1.09001 * 109.47240 * 53.91011 * 16 13 12 43 43 H 0.97000 * 119.99912 * 185.00359 * 21 20 18 44 44 H 1.09003 * 117.50092 * 359.97438 * 26 17 16 45 45 H 1.09003 * 117.50455 * 145.02103 * 26 17 16 46 46 H 1.08999 * 117.50051 * 214.97789 * 27 17 16 47 47 H 1.09000 * 117.49698 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0007 2.7325 0.1633 7 1 3.6541 3.3152 -0.6902 8 6 3.4060 3.3070 1.4528 9 6 3.9551 4.7180 1.6798 10 6 5.4764 4.6555 1.8345 11 6 6.0947 4.0965 0.5492 12 7 5.4660 2.8037 0.2455 13 16 6.3913 1.4524 0.0002 14 8 5.7234 0.7547 -1.0421 15 8 7.7072 1.9571 -0.1820 16 6 6.2724 0.5331 1.5595 17 6 6.9682 -0.8210 1.4076 18 6 8.2562 -0.8058 0.6253 19 1 8.2360 -0.9028 -0.4501 20 6 9.4604 -0.6683 1.2827 21 7 9.4925 -0.6396 2.5971 22 14 11.0461 -0.5227 0.3063 23 1 10.7407 -0.5830 -1.1458 24 1 11.7042 0.7709 0.6208 25 1 11.9543 -1.6407 0.6674 26 6 6.0808 -2.0613 1.2842 27 6 6.8620 -1.8048 2.5746 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.9503 0.8849 -0.9434 32 1 3.9615 0.6829 0.8251 33 1 2.3203 3.3489 1.3656 34 1 3.6791 2.6703 2.2945 35 1 3.5151 5.1388 2.5838 36 1 3.7026 5.3474 0.8263 37 1 5.7304 4.0065 2.6727 38 1 5.8648 5.6571 2.0193 39 1 5.9187 4.7904 -0.2727 40 1 7.1665 3.9575 0.6898 41 1 6.7546 1.1021 2.3544 42 1 5.2232 0.3764 1.8099 43 1 10.3289 -0.4703 3.0582 44 1 5.0014 -1.9126 1.3117 45 1 6.4285 -2.8666 0.6371 46 1 7.7235 -2.4413 2.7763 47 1 6.2961 -1.4874 3.4504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590751124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:15 Heat of formation + Delta-G solvation = -122.782299 kcal Electronic energy + Delta-G solvation = -31069.157647 eV Core-core repulsion = 26959.616211 eV Total energy + Delta-G solvation = -4109.541436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.70432 -38.62064 -36.81714 -36.60490 -36.41832 -35.10462 -33.00710 -32.04599 -32.00206 -28.96495 -28.33712 -27.02585 -25.55848 -23.99750 -22.94444 -21.14163 -20.90370 -20.48015 -19.30726 -18.43892 -17.63991 -17.09324 -16.77233 -16.63695 -16.23974 -15.38715 -15.16146 -14.67722 -14.61289 -14.40676 -14.25903 -14.22266 -13.76112 -13.40501 -13.37797 -13.12665 -13.02842 -12.68794 -12.29481 -12.04462 -11.83342 -11.78347 -11.49237 -11.26498 -11.22320 -11.03988 -10.96440 -10.93291 -10.89713 -10.80312 -10.63309 -10.47048 -10.39513 -10.31349 -10.08816 -9.89022 -9.63685 -9.11552 -8.77518 -8.46643 -8.10205 -6.17032 -4.33120 0.99601 2.15093 2.56044 3.30707 3.37424 3.39494 3.47239 4.39120 4.40232 4.49944 4.68996 4.74396 4.86787 4.97182 4.97324 4.98708 5.04845 5.11004 5.16516 5.24107 5.28027 5.35676 5.42233 5.48951 5.67882 5.78986 5.81582 5.85737 5.90536 5.96148 6.07645 6.09455 6.17514 6.24713 6.29984 6.35882 6.38435 6.48611 6.60016 6.72963 6.85322 6.97691 7.21054 7.54261 7.69423 7.75060 8.15365 8.75668 9.43712 10.88870 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.004770 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.544273 B = 5868.818507 C = 7058.224023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.479 3.521 4 O -0.510 6.510 5 C -0.190 4.190 6 C 0.176 3.824 7 H 0.086 0.914 8 C -0.144 4.144 9 C -0.112 4.112 10 C -0.138 4.138 11 C 0.120 3.880 12 N -1.011 6.011 13 S 2.619 3.381 14 O -0.969 6.969 15 O -0.940 6.940 16 C -0.564 4.564 17 C 0.038 3.962 18 C -0.535 4.535 19 H 0.069 0.931 20 C 0.093 3.907 21 N -0.868 5.868 22 Si 0.891 3.109 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.284 1.284 26 C -0.207 4.207 27 C -0.129 4.129 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.177 0.823 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.098 0.902 43 H 0.264 0.736 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.384 7.090 -0.244 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.322 3.678 4 O -0.398 6.398 5 C -0.228 4.228 6 C 0.069 3.931 7 H 0.104 0.896 8 C -0.183 4.183 9 C -0.149 4.149 10 C -0.177 4.177 11 C -0.005 4.005 12 N -0.847 5.847 13 S 2.718 3.282 14 O -0.959 6.959 15 O -0.930 6.930 16 C -0.696 4.696 17 C 0.036 3.964 18 C -0.572 4.572 19 H 0.087 0.913 20 C -0.114 4.114 21 N -0.503 5.503 22 Si 0.718 3.282 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.210 1.210 26 C -0.244 4.244 27 C -0.168 4.168 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.193 0.807 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.142 0.858 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.113 0.887 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.997 7.181 -0.909 15.758 hybrid contribution 0.363 0.118 0.513 0.639 sum -13.634 7.299 -0.396 15.470 Atomic orbital electron populations 1.23269 0.76473 1.03716 1.02428 1.86556 1.23258 1.33261 1.83940 1.23338 0.91452 0.81258 0.71713 1.90600 1.67324 1.36004 1.45913 1.22978 0.89529 0.99258 1.11002 1.20491 0.79725 0.93525 0.99310 0.89613 1.22247 1.02102 0.97046 0.96899 1.21428 0.95324 0.96601 1.01589 1.21968 0.95983 1.01384 0.98389 1.21402 0.98271 0.84055 0.96755 1.58265 1.14549 1.23946 1.87911 1.04855 0.72911 0.72787 0.77651 1.93329 1.74368 1.74224 1.53973 1.93510 1.36343 1.77752 1.85439 1.30255 1.06139 1.12353 1.20835 1.18234 0.94211 0.82946 1.00996 1.20620 0.88971 1.54377 0.93243 0.91331 1.24913 0.99207 0.92490 0.94776 1.70023 1.27321 1.45960 1.06982 0.86523 0.82762 0.77791 0.81124 1.19061 1.20242 1.20971 1.23187 0.95634 1.02668 1.02888 1.22477 1.00452 1.03926 0.89959 0.88092 0.91942 0.91891 0.80653 0.87375 0.88934 0.91812 0.91978 0.91857 0.91316 0.90947 0.91497 0.88191 0.85787 0.88346 0.92666 0.91379 0.89670 0.88676 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.38 16 2 O -0.35 -4.56 10.56 -39.25 -0.41 -4.97 16 3 C 0.48 6.60 7.57 36.00 0.27 6.88 16 4 O -0.51 -7.35 13.54 -18.75 -0.25 -7.61 16 5 C -0.19 -2.77 4.02 -27.89 -0.11 -2.88 16 6 C 0.18 2.46 2.62 -67.60 -0.18 2.28 16 7 H 0.09 1.16 8.11 -51.93 -0.42 0.74 16 8 C -0.14 -1.77 4.92 -26.58 -0.13 -1.90 16 9 C -0.11 -1.20 5.89 -26.65 -0.16 -1.36 16 10 C -0.14 -1.56 6.08 -26.61 -0.16 -1.72 16 11 C 0.12 1.64 6.39 -3.71 -0.02 1.62 16 12 N -1.01 -15.81 3.21 -106.48 -0.34 -16.15 16 13 S 2.62 52.92 4.02 -107.50 -0.43 52.49 16 14 O -0.97 -20.48 14.12 -57.54 -0.81 -21.29 16 15 O -0.94 -22.31 15.52 -57.54 -0.89 -23.20 16 16 C -0.56 -11.35 6.01 37.16 0.22 -11.12 16 17 C 0.04 0.91 1.88 -155.66 -0.29 0.62 16 18 C -0.53 -14.46 6.95 -34.44 -0.24 -14.70 16 19 H 0.07 1.91 7.82 -52.49 -0.41 1.50 16 20 C 0.09 2.53 5.41 -17.82 -0.10 2.43 16 21 N -0.87 -23.73 11.92 55.43 0.66 -23.07 16 22 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.21 -4.39 9.88 -26.73 -0.26 -4.66 16 27 C -0.13 -2.93 8.88 -26.73 -0.24 -3.17 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 31 H 0.18 2.82 5.28 -52.13 -0.28 2.55 16 32 H 0.11 1.54 4.96 -51.93 -0.26 1.28 16 33 H 0.09 1.16 5.71 -51.93 -0.30 0.86 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.49 6.77 -51.93 -0.35 1.14 16 41 H 0.12 2.50 8.14 -51.92 -0.42 2.08 16 42 H 0.10 1.64 5.47 -51.92 -0.28 1.36 16 43 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 44 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 45 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 46 H 0.09 2.34 7.65 -51.93 -0.40 1.95 16 47 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -31.67 376.68 -9.48 -41.16 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.32 Total: 6.53 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: -0.33 Total: -26.31 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.32 Total: -39.22 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -2.37 Total: -57.07 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 52.92 SS G_CDS: -0.43 Total: 52.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.67 -9.48 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590751124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.625 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds