Wall clock time and date at job start Wed Apr 1 2020 03:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00269 * 2 1 4 4 C 1.50699 * 109.47075 * 180.02562 * 3 2 1 5 5 C 1.46252 * 126.95679 * 269.99552 * 4 3 2 6 6 C 1.39708 * 134.18587 * 0.02562 * 5 4 3 7 7 C 1.36625 * 119.70454 * 180.02562 * 6 5 4 8 8 C 1.38834 * 120.44706 * 0.02562 * 7 6 5 9 9 C 1.37798 * 120.74239 * 359.97438 * 8 7 6 10 10 C 1.39024 * 119.85852 * 0.02562 * 9 8 7 11 11 O 1.34717 * 133.25007 * 179.97438 * 10 9 8 12 12 C 1.34943 * 110.86658 * 180.02562 * 11 10 9 13 13 C 1.46974 * 125.13257 * 179.97438 * 12 11 10 14 14 O 1.21652 * 120.00240 * 180.02562 * 13 12 11 15 15 N 1.34782 * 119.99732 * 0.02562 * 13 12 11 16 16 C 1.47423 * 125.65080 * 359.69073 * 15 13 12 17 17 C 1.55129 * 104.72386 * 155.81870 * 16 15 13 18 18 C 1.55158 * 101.48517 * 37.29635 * 17 16 15 19 19 O 1.42901 * 110.72157 * 82.69527 * 18 17 16 20 20 C 1.50698 * 110.71784 * 205.97150 * 18 17 16 21 21 H 1.08004 * 119.99804 * 354.97361 * 20 18 17 22 22 C 1.37875 * 120.00152 * 174.97388 * 20 18 17 23 23 N 1.31513 * 119.99690 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 120.00416 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46695 * 60.00185 * 24 22 20 26 26 H 1.48494 * 109.47531 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47295 * 300.00370 * 24 22 20 28 28 C 1.47020 * 125.64656 * 179.97438 * 15 13 12 29 29 H 1.09000 * 109.46988 * 300.00483 * 1 2 3 30 30 H 1.08999 * 109.47262 * 60.00022 * 1 2 3 31 31 H 1.08998 * 109.47265 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47081 * 59.99479 * 3 2 1 33 33 H 1.09005 * 109.46444 * 299.99726 * 3 2 1 34 34 H 1.08000 * 120.14778 * 0.29313 * 6 5 4 35 35 H 1.08002 * 119.77566 * 179.97438 * 7 6 5 36 36 H 1.07992 * 119.62985 * 180.02562 * 8 7 6 37 37 H 1.08006 * 120.07019 * 180.02562 * 9 8 7 38 38 H 1.08998 * 110.36271 * 274.75027 * 16 15 13 39 39 H 1.09005 * 110.36505 * 37.06548 * 16 15 13 40 40 H 1.08999 * 111.19071 * 279.18972 * 17 16 15 41 41 H 1.09000 * 110.93209 * 155.28840 * 17 16 15 42 42 H 0.96701 * 113.99708 * 185.02624 * 19 18 17 43 43 H 0.97003 * 119.99761 * 179.97438 * 23 22 20 44 44 H 1.08995 * 109.88555 * 300.43829 * 28 15 13 45 45 H 1.09000 * 109.88465 * 61.44806 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.3896 1.1168 1.1677 6 6 4.1757 1.1332 2.5482 7 6 5.2410 1.0493 3.3994 8 6 6.5331 0.9486 2.9015 9 6 6.7653 0.9308 1.5434 10 6 5.6971 1.0149 0.6574 11 8 5.6114 1.0224 -0.6870 12 6 4.3263 1.1237 -1.0861 13 6 3.8753 1.1605 -2.4844 14 8 2.6894 1.2543 -2.7388 15 7 4.7757 1.0903 -3.4849 16 6 6.2366 0.9814 -3.3200 17 6 6.7338 0.3242 -4.6344 18 6 5.8001 0.9851 -5.6826 19 8 6.2949 2.2713 -6.0608 20 6 5.6411 0.0972 -6.8898 21 1 6.2112 -0.8169 -6.9667 22 6 4.7679 0.4518 -7.8962 23 7 4.0734 1.5647 -7.8023 24 14 4.5713 -0.6484 -9.3930 25 1 4.0981 -1.9888 -8.9632 26 1 3.5809 -0.0478 -10.3222 27 1 5.8790 -0.7830 -10.0836 28 6 4.4640 1.1157 -4.9215 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.1723 1.2074 2.9408 35 1 5.0770 1.0623 4.4668 36 1 7.3655 0.8827 3.5863 37 1 7.7748 0.8517 1.1679 38 1 6.6791 1.9698 -3.1963 39 1 6.4758 0.3482 -2.4656 40 1 6.5934 -0.7564 -4.6122 41 1 7.7768 0.5768 -4.8257 42 1 5.7086 2.7589 -6.6554 43 1 3.4593 1.8143 -8.5105 44 1 3.8104 0.2808 -5.1738 45 1 3.9787 2.0571 -5.1790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:58 Heat of formation + Delta-G solvation = -89.159806 kcal Electronic energy + Delta-G solvation = -30690.087545 eV Core-core repulsion = 26446.560138 eV Total energy + Delta-G solvation = -4243.527406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.60423 -39.41469 -37.97699 -37.85074 -37.21113 -34.41089 -33.32854 -32.26604 -30.75394 -30.39005 -29.74485 -28.01288 -27.53132 -25.83570 -25.11396 -23.74835 -22.97116 -22.28955 -20.51481 -19.69190 -19.47010 -17.76159 -17.19352 -17.15981 -16.70617 -16.27884 -15.98792 -15.60277 -15.44770 -15.20031 -14.82326 -14.75062 -14.60515 -14.27969 -13.96978 -13.53924 -13.19228 -12.98774 -12.90232 -12.48155 -12.43607 -12.30076 -12.12759 -11.96311 -11.67640 -11.50788 -11.44981 -11.10003 -11.04796 -10.82111 -10.67594 -10.53412 -10.21673 -10.16511 -9.98357 -9.44185 -9.34956 -8.80484 -8.70828 -8.41088 -8.37525 -7.96412 -6.31408 -4.40111 0.50194 1.18317 1.74112 2.44859 3.21502 3.27218 3.29082 3.36595 3.41778 3.50006 4.01185 4.24791 4.34921 4.49674 4.67642 4.77908 4.91332 4.97287 5.07669 5.18156 5.22610 5.26310 5.37071 5.38602 5.47384 5.62550 5.68437 5.73879 5.76045 5.79310 5.91115 6.02133 6.10335 6.19453 6.20560 6.24254 6.41059 6.45890 6.70803 6.79887 6.81483 6.97699 7.16761 7.19326 7.31073 7.69713 7.93834 8.01024 8.41607 8.63521 9.25411 9.34556 10.76461 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014538 B = 0.003161 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.557077 B = 8854.472822 C =10277.457567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.381 6.381 3 C 0.129 3.871 4 C -0.109 4.109 5 C -0.124 4.124 6 C -0.062 4.062 7 C -0.139 4.139 8 C -0.091 4.091 9 C -0.106 4.106 10 C 0.061 3.939 11 O -0.173 6.173 12 C 0.022 3.978 13 C 0.595 3.405 14 O -0.518 6.518 15 N -0.594 5.594 16 C 0.098 3.902 17 C -0.117 4.117 18 C 0.249 3.751 19 O -0.583 6.583 20 C -0.538 4.538 21 H 0.067 0.933 22 C 0.071 3.929 23 N -0.895 5.895 24 Si 0.904 3.096 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.103 3.897 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.382 0.618 43 H 0.271 0.729 44 H 0.072 0.928 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 0.156 20.310 20.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.053 3.947 4 C -0.112 4.112 5 C -0.125 4.125 6 C -0.080 4.080 7 C -0.157 4.157 8 C -0.109 4.109 9 C -0.125 4.125 10 C 0.013 3.987 11 O -0.074 6.074 12 C -0.029 4.029 13 C 0.381 3.619 14 O -0.397 6.397 15 N -0.325 5.325 16 C -0.024 4.024 17 C -0.155 4.155 18 C 0.208 3.792 19 O -0.392 6.392 20 C -0.576 4.576 21 H 0.085 0.915 22 C -0.132 4.132 23 N -0.533 5.533 24 Si 0.732 3.268 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.017 4.017 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.232 0.768 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.468 -0.037 20.279 20.284 hybrid contribution -0.905 -0.151 -1.059 1.402 sum -0.437 -0.187 19.219 19.225 Atomic orbital electron populations 1.22715 0.80929 1.02659 0.99970 1.87935 1.19626 1.26991 1.95432 1.20766 0.86519 0.85694 1.01744 1.20861 0.95215 1.05240 0.89865 1.19730 0.92301 1.06264 0.94170 1.20318 0.99673 0.97720 0.90263 1.20758 0.92309 1.02753 0.99894 1.20959 0.97437 0.98782 0.93716 1.20002 0.96829 1.04477 0.91144 1.19813 0.95527 1.01837 0.81550 1.84256 1.27343 1.75251 1.20527 1.22203 0.80954 1.04587 0.95170 1.16322 0.85368 0.79215 0.80980 1.90826 1.15089 1.51948 1.81882 1.48769 1.07356 1.68300 1.08091 1.22555 0.79762 1.00880 0.99214 1.22808 1.00295 0.99600 0.92755 1.19499 0.86362 0.82404 0.90898 1.86123 1.51591 1.31787 1.69709 1.21455 1.24831 1.07843 1.03518 0.91469 1.25073 0.94343 0.95265 0.98556 1.69685 1.26320 1.22929 1.34376 0.86445 0.78049 0.80569 0.81773 1.19983 1.21067 1.19966 1.23166 1.01405 1.02472 0.74688 0.94432 0.93554 0.89714 0.92631 0.89754 0.85496 0.85283 0.84693 0.84676 0.91277 0.90925 0.90297 0.90281 0.76758 0.91898 0.90919 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.03 10.69 -35.23 -0.38 -6.41 16 3 C 0.13 1.93 5.86 36.01 0.21 2.14 16 4 C -0.11 -1.77 6.02 -102.28 -0.62 -2.39 16 5 C -0.12 -1.76 6.37 -105.19 -0.67 -2.43 16 6 C -0.06 -0.68 10.06 -39.62 -0.40 -1.08 16 7 C -0.14 -1.23 9.98 -39.94 -0.40 -1.63 16 8 C -0.09 -0.79 10.01 -39.52 -0.40 -1.18 16 9 C -0.11 -1.15 10.07 -39.45 -0.40 -1.55 16 10 C 0.06 0.87 7.41 -38.35 -0.28 0.58 16 11 O -0.17 -2.83 7.68 2.78 0.02 -2.81 16 12 C 0.02 0.39 6.89 -36.92 -0.25 0.14 16 13 C 0.60 12.41 7.83 -12.72 -0.10 12.31 16 14 O -0.52 -11.82 14.94 5.23 0.08 -11.74 16 15 N -0.59 -12.59 3.33 -171.81 -0.57 -13.16 16 16 C 0.10 1.83 6.15 -2.41 -0.01 1.82 16 17 C -0.12 -2.34 6.24 -24.46 -0.15 -2.49 16 18 C 0.25 5.95 0.85 -89.94 -0.08 5.87 16 19 O -0.58 -14.42 13.08 -35.23 -0.46 -14.88 16 20 C -0.54 -13.91 8.12 -34.44 -0.28 -14.19 16 21 H 0.07 1.71 7.78 -52.48 -0.41 1.30 16 22 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 23 N -0.89 -23.48 10.98 55.43 0.61 -22.87 16 24 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 26 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 C 0.10 2.48 5.23 -3.06 -0.02 2.46 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.38 6.37 -51.93 -0.33 1.05 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.22 6.17 -51.93 -0.32 0.90 16 40 H 0.08 1.53 8.04 -51.93 -0.42 1.11 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.38 9.62 7.47 45.56 0.34 9.96 16 43 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.07 1.89 7.81 -51.93 -0.41 1.48 16 45 H 0.07 1.82 7.93 -51.93 -0.41 1.41 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -30.02 375.88 -8.20 -38.22 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -5.32 Total: 11.08 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.82 Total: 1.62 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.04 Total: -36.03 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.74 Total: -35.84 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.02 -8.20 -38.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.942 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds