Wall clock time and date at job start Wed Apr 1 2020 03:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00269 * 2 1 4 4 C 1.50699 * 109.47075 * 180.02562 * 3 2 1 5 5 C 1.46252 * 126.95679 * 269.99552 * 4 3 2 6 6 C 1.39708 * 134.18587 * 0.02562 * 5 4 3 7 7 C 1.36625 * 119.70454 * 180.02562 * 6 5 4 8 8 C 1.38834 * 120.44706 * 0.02562 * 7 6 5 9 9 C 1.37798 * 120.74239 * 359.97438 * 8 7 6 10 10 C 1.39024 * 119.85852 * 0.02562 * 9 8 7 11 11 O 1.34717 * 133.25007 * 179.97438 * 10 9 8 12 12 C 1.34943 * 110.86658 * 180.02562 * 11 10 9 13 13 C 1.46974 * 125.13257 * 179.97438 * 12 11 10 14 14 O 1.21652 * 120.00240 * 180.02562 * 13 12 11 15 15 N 1.34782 * 119.99732 * 0.02562 * 13 12 11 16 16 C 1.47423 * 125.65080 * 359.69073 * 15 13 12 17 17 C 1.55129 * 104.72386 * 155.81870 * 16 15 13 18 18 C 1.55158 * 101.48517 * 37.29635 * 17 16 15 19 19 O 1.42901 * 110.72157 * 82.69527 * 18 17 16 20 20 C 1.50698 * 110.71784 * 205.97150 * 18 17 16 21 21 H 1.08004 * 119.99804 * 354.97361 * 20 18 17 22 22 C 1.37875 * 120.00152 * 174.97388 * 20 18 17 23 23 N 1.31513 * 119.99690 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 120.00416 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46695 * 60.00185 * 24 22 20 26 26 H 1.48494 * 109.47531 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47295 * 300.00370 * 24 22 20 28 28 C 1.47020 * 125.64656 * 179.97438 * 15 13 12 29 29 H 1.09000 * 109.46988 * 300.00483 * 1 2 3 30 30 H 1.08999 * 109.47262 * 60.00022 * 1 2 3 31 31 H 1.08998 * 109.47265 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47081 * 59.99479 * 3 2 1 33 33 H 1.09005 * 109.46444 * 299.99726 * 3 2 1 34 34 H 1.08000 * 120.14778 * 0.29313 * 6 5 4 35 35 H 1.08002 * 119.77566 * 179.97438 * 7 6 5 36 36 H 1.07992 * 119.62985 * 180.02562 * 8 7 6 37 37 H 1.08006 * 120.07019 * 180.02562 * 9 8 7 38 38 H 1.08998 * 110.36271 * 274.75027 * 16 15 13 39 39 H 1.09005 * 110.36505 * 37.06548 * 16 15 13 40 40 H 1.08999 * 111.19071 * 279.18972 * 17 16 15 41 41 H 1.09000 * 110.93209 * 155.28840 * 17 16 15 42 42 H 0.96701 * 113.99708 * 185.02624 * 19 18 17 43 43 H 0.97003 * 119.99761 * 179.97438 * 23 22 20 44 44 H 1.08995 * 109.88555 * 300.43829 * 28 15 13 45 45 H 1.09000 * 109.88465 * 61.44806 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.3896 1.1168 1.1677 6 6 4.1757 1.1332 2.5482 7 6 5.2410 1.0493 3.3994 8 6 6.5331 0.9486 2.9015 9 6 6.7653 0.9308 1.5434 10 6 5.6971 1.0149 0.6574 11 8 5.6114 1.0224 -0.6870 12 6 4.3263 1.1237 -1.0861 13 6 3.8753 1.1605 -2.4844 14 8 2.6894 1.2543 -2.7388 15 7 4.7757 1.0903 -3.4849 16 6 6.2366 0.9814 -3.3200 17 6 6.7338 0.3242 -4.6344 18 6 5.8001 0.9851 -5.6826 19 8 6.2949 2.2713 -6.0608 20 6 5.6411 0.0972 -6.8898 21 1 6.2112 -0.8169 -6.9667 22 6 4.7679 0.4518 -7.8962 23 7 4.0734 1.5647 -7.8023 24 14 4.5713 -0.6484 -9.3930 25 1 4.0981 -1.9888 -8.9632 26 1 3.5809 -0.0478 -10.3222 27 1 5.8790 -0.7830 -10.0836 28 6 4.4640 1.1157 -4.9215 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.1723 1.2074 2.9408 35 1 5.0770 1.0623 4.4668 36 1 7.3655 0.8827 3.5863 37 1 7.7748 0.8517 1.1679 38 1 6.6791 1.9698 -3.1963 39 1 6.4758 0.3482 -2.4656 40 1 6.5934 -0.7564 -4.6122 41 1 7.7768 0.5768 -4.8257 42 1 5.7086 2.7589 -6.6554 43 1 3.4593 1.8143 -8.5105 44 1 3.8104 0.2808 -5.1738 45 1 3.9787 2.0571 -5.1790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:57 Heat of formation + Delta-G solvation = -109.552456 kcal Electronic energy + Delta-G solvation = -30690.971836 eV Core-core repulsion = 26446.560138 eV Total energy + Delta-G solvation = -4244.411698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.70058 -41.04773 -39.25902 -38.91396 -38.64431 -36.22113 -34.44069 -34.26709 -32.13740 -31.46577 -30.91001 -29.68983 -28.77654 -27.35914 -26.42013 -25.10737 -24.12369 -23.50994 -21.72676 -21.37860 -20.86261 -19.23732 -18.93562 -18.28065 -17.92215 -17.50279 -17.25466 -17.11595 -16.82985 -16.45893 -16.42021 -16.19888 -15.83414 -15.49324 -14.93485 -14.88956 -14.86048 -14.73986 -14.40421 -13.90182 -13.54914 -13.43855 -13.39938 -13.25713 -13.19569 -12.87044 -12.81020 -12.57465 -12.47687 -12.38405 -12.33339 -12.13804 -11.92640 -11.51539 -11.21702 -11.20057 -10.68796 -10.64022 -10.34668 -9.86381 -9.67450 -9.28468 -8.28858 -6.44925 -0.59633 0.32842 0.67870 1.24800 1.42351 1.42771 1.50811 1.84999 1.91727 2.36874 2.67074 2.95029 2.97388 3.13747 3.53659 3.55068 3.71246 3.80759 3.99263 4.08075 4.11636 4.17280 4.27700 4.30126 4.35359 4.45161 4.46871 4.51344 4.57816 4.60233 4.66683 4.78075 4.79172 4.93099 5.02674 5.05419 5.12105 5.25042 5.27062 5.36328 5.41571 5.47268 5.56727 5.69969 5.99589 6.02105 6.10459 6.34020 6.61671 6.78743 7.23780 7.31951 8.77405 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014538 B = 0.003161 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.557077 B = 8854.472822 C =10277.457567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.128 3.872 4 C -0.097 4.097 5 C -0.150 4.150 6 C -0.068 4.068 7 C -0.129 4.129 8 C -0.070 4.070 9 C -0.119 4.119 10 C 0.040 3.960 11 O -0.183 6.183 12 C -0.018 4.018 13 C 0.593 3.407 14 O -0.552 6.552 15 N -0.603 5.603 16 C 0.108 3.892 17 C -0.110 4.110 18 C 0.236 3.764 19 O -0.585 6.585 20 C -0.559 4.559 21 H 0.068 0.932 22 C 0.027 3.973 23 N -0.915 5.915 24 Si 0.964 3.036 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.268 1.268 28 C 0.122 3.878 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.177 0.823 37 H 0.154 0.846 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.376 0.624 43 H 0.271 0.729 44 H 0.041 0.959 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.855 -0.586 23.984 24.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C 0.052 3.948 4 C -0.101 4.101 5 C -0.151 4.151 6 C -0.086 4.086 7 C -0.146 4.146 8 C -0.088 4.088 9 C -0.137 4.137 10 C -0.007 4.007 11 O -0.085 6.085 12 C -0.069 4.069 13 C 0.381 3.619 14 O -0.433 6.433 15 N -0.334 5.334 16 C -0.014 4.014 17 C -0.148 4.148 18 C 0.196 3.804 19 O -0.393 6.393 20 C -0.597 4.597 21 H 0.086 0.914 22 C -0.174 4.174 23 N -0.553 5.553 24 Si 0.789 3.211 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.192 1.192 28 C 0.000 4.000 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.163 0.837 35 H 0.186 0.814 36 H 0.195 0.805 37 H 0.172 0.828 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.226 0.774 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.902 -0.781 23.979 24.066 hybrid contribution -1.344 0.090 -1.941 2.363 sum 0.558 -0.691 22.037 22.055 Atomic orbital electron populations 1.22932 0.78992 1.03951 1.00915 1.87883 1.21856 1.27360 1.95618 1.20803 0.86111 0.85696 1.02161 1.21265 0.95884 1.02374 0.90566 1.19905 0.91679 1.08445 0.95054 1.20672 1.01611 0.97353 0.88945 1.21281 0.91601 1.00164 1.01568 1.21553 0.98832 0.95192 0.93200 1.20455 0.96892 1.04673 0.91661 1.20419 0.96901 1.02635 0.80766 1.84139 1.26212 1.76057 1.22104 1.21510 0.82418 1.09218 0.93706 1.16715 0.84930 0.78016 0.82201 1.90784 1.16370 1.53214 1.82965 1.48779 1.08625 1.68976 1.06978 1.22582 0.78055 1.01463 0.99256 1.22801 1.00349 0.99697 0.91917 1.19674 0.87313 0.82037 0.91399 1.86110 1.51463 1.32197 1.69556 1.21773 1.25153 1.08296 1.04509 0.91355 1.25811 0.94045 0.96449 1.01086 1.69793 1.26542 1.24056 1.34946 0.85511 0.78113 0.78807 0.78648 1.19827 1.20865 1.19243 1.22675 1.00910 0.99474 0.76929 0.91488 0.94551 0.88317 0.89249 0.92168 0.83719 0.81398 0.80533 0.82790 0.90835 0.88713 0.89692 0.88665 0.77448 0.91970 0.94032 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.41 -13.01 10.69 -148.98 -1.59 -14.60 16 3 C 0.13 3.91 5.86 71.24 0.42 4.33 16 4 C -0.10 -3.24 6.02 -18.35 -0.11 -3.35 16 5 C -0.15 -4.08 6.37 -20.23 -0.13 -4.21 16 6 C -0.07 -1.27 10.06 22.25 0.22 -1.05 16 7 C -0.13 -1.61 9.98 22.03 0.22 -1.39 16 8 C -0.07 -0.85 10.01 22.31 0.22 -0.63 16 9 C -0.12 -2.18 10.07 22.35 0.23 -1.96 16 10 C 0.04 1.10 7.41 23.07 0.17 1.27 16 11 O -0.18 -6.06 7.68 -12.97 -0.10 -6.16 16 12 C -0.02 -0.69 6.89 24.00 0.17 -0.52 16 13 C 0.59 26.34 7.83 86.53 0.68 27.02 16 14 O -0.55 -27.18 14.94 -4.20 -0.06 -27.25 16 15 N -0.60 -26.94 3.33 -815.73 -2.71 -29.65 16 16 C 0.11 4.08 6.15 86.93 0.53 4.61 16 17 C -0.11 -4.43 6.24 32.06 0.20 -4.23 16 18 C 0.24 11.68 0.85 -10.35 -0.01 11.67 16 19 O -0.59 -29.88 13.08 -148.98 -1.95 -31.83 16 20 C -0.56 -29.63 8.12 25.60 0.21 -29.43 16 21 H 0.07 3.51 7.78 -2.91 -0.02 3.49 16 22 C 0.03 1.44 5.28 84.65 0.45 1.89 16 23 N -0.91 -49.87 10.98 21.45 0.24 -49.63 16 24 Si 0.96 42.29 29.54 68.60 2.03 44.31 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 28 C 0.12 6.25 5.23 86.73 0.45 6.71 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 2.11 6.37 -2.38 -0.02 2.09 16 34 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 38 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.09 3.17 6.17 -2.38 -0.01 3.15 16 40 H 0.08 3.29 8.04 -2.39 -0.02 3.27 16 41 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 42 H 0.38 19.87 7.47 -74.06 -0.55 19.31 16 43 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 44 H 0.04 2.32 7.81 -2.39 -0.02 2.31 16 45 H 0.04 2.32 7.93 -2.39 -0.02 2.30 16 Total: -1.00 -69.83 375.88 1.49 -68.34 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.48 Total: 33.85 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 5.17 Total: 12.62 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -2.48 Total: -79.29 kcal Atomic # 8 Polarization: -76.13 SS G_CDS: -3.70 Total: -79.84 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -69.83 1.49 -68.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.214 kcal (2) G-P(sol) polarization free energy of solvation -69.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds