Wall clock time and date at job start Wed Apr 1 2020 03:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35987 * 116.99477 * 2 1 4 4 C 1.38993 * 119.88801 * 359.97438 * 3 2 1 5 5 C 1.38218 * 120.58358 * 180.02562 * 4 3 2 6 6 C 1.38334 * 119.92825 * 0.03154 * 5 4 3 7 7 C 1.40543 * 119.72039 * 359.92476 * 6 5 4 8 8 C 1.38396 * 119.88451 * 179.97438 * 3 2 1 9 9 C 1.47123 * 118.49440 * 180.11271 * 7 6 5 10 10 C 1.35591 * 117.88901 * 16.11461 * 9 7 6 11 11 C 1.46237 * 120.14898 * 180.90691 * 10 9 7 12 12 O 1.21724 * 119.99948 * 259.20694 * 11 10 9 13 13 N 1.34775 * 120.00026 * 79.20699 * 11 10 9 14 14 C 1.47019 * 125.64816 * 354.95457 * 13 11 10 15 15 C 1.54368 * 107.28670 * 181.13039 * 14 13 11 16 16 C 1.55156 * 102.92173 * 22.14126 * 15 14 13 17 17 O 1.42902 * 111.00728 * 82.63882 * 16 15 14 18 18 C 1.50703 * 111.00193 * 206.45115 * 16 15 14 19 19 H 1.08004 * 119.99501 * 115.41937 * 18 16 15 20 20 C 1.37872 * 120.00093 * 295.14068 * 18 16 15 21 21 N 1.31509 * 120.00278 * 0.27703 * 20 18 16 22 22 Si 1.86805 * 119.99793 * 180.27823 * 20 18 16 23 23 H 1.48498 * 109.47101 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47125 * 120.00075 * 22 20 18 25 25 H 1.48496 * 109.46828 * 239.99827 * 22 20 18 26 26 C 1.47424 * 125.64660 * 175.00366 * 13 11 10 27 27 C 1.50653 * 119.70408 * 1.17595 * 10 9 7 28 28 O 1.35669 * 121.24298 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.46793 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47471 * 299.99627 * 1 2 3 31 31 H 1.08998 * 109.47292 * 60.00412 * 1 2 3 32 32 H 1.07999 * 119.71086 * 0.04018 * 4 3 2 33 33 H 1.07994 * 120.03302 * 180.02562 * 5 4 3 34 34 H 1.07995 * 120.26354 * 359.96980 * 8 3 2 35 35 H 1.08006 * 121.05774 * 196.14176 * 9 7 6 36 36 H 1.09000 * 109.88314 * 300.51047 * 14 13 11 37 37 H 1.08999 * 109.88231 * 61.68072 * 14 13 11 38 38 H 1.08996 * 110.70674 * 263.79624 * 15 14 13 39 39 H 1.09010 * 110.75778 * 140.50615 * 15 14 13 40 40 H 0.96706 * 113.99770 * 64.57935 * 17 16 15 41 41 H 0.97003 * 120.00173 * 180.02562 * 21 20 18 42 42 H 1.08992 * 110.37011 * 36.99272 * 26 13 11 43 43 H 1.09005 * 110.36292 * 274.66627 * 26 13 11 44 44 H 1.09005 * 109.29975 * 88.53999 * 27 10 9 45 45 H 1.08997 * 109.30488 * 207.91926 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2869 2.3759 -0.0005 5 6 1.8992 3.6150 -0.0011 6 6 3.2798 3.7025 -0.0017 7 6 4.0524 2.5285 -0.0003 8 6 3.4285 1.2815 0.0005 9 6 5.5184 2.6530 0.0015 10 6 6.0525 3.8541 0.3343 11 6 7.5032 4.0385 0.3329 12 8 8.1212 4.0110 1.3811 13 7 8.1558 4.2390 -0.8292 14 6 7.5535 4.1916 -2.1694 15 6 8.6826 4.4522 -3.1893 16 6 9.9609 4.0721 -2.3964 17 8 10.1844 2.6610 -2.4307 18 6 11.1617 4.8190 -2.9172 19 1 11.6708 5.5311 -2.2845 20 6 11.6137 4.5893 -4.1992 21 7 10.9938 3.7222 -4.9696 22 14 13.1069 5.5095 -4.8421 23 1 13.6182 6.4214 -3.7875 24 1 14.1662 4.5369 -5.2124 25 1 12.7229 6.3021 -6.0376 26 6 9.5922 4.5411 -0.9668 27 6 5.1450 4.9959 0.7115 28 8 3.9087 4.9047 -0.0028 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2088 2.3117 -0.0003 33 1 1.3006 4.5138 -0.0011 34 1 4.0191 0.3773 0.0014 35 1 6.1491 1.8145 -0.2545 36 1 7.1161 3.2087 -2.3448 37 1 6.7875 4.9619 -2.2591 38 1 8.7061 5.5030 -3.4781 39 1 8.5675 3.8130 -4.0648 40 1 10.3703 2.3137 -3.3139 41 1 11.3121 3.5603 -5.8715 42 1 10.1689 3.9881 -0.2255 43 1 9.7662 5.6121 -0.8623 44 1 4.9494 4.9618 1.7833 45 1 5.6327 5.9396 0.4673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:56 Heat of formation + Delta-G solvation = -105.353426 kcal Electronic energy + Delta-G solvation = -30023.239722 eV Core-core repulsion = 25779.010107 eV Total energy + Delta-G solvation = -4244.229615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.04424 -39.80394 -39.17214 -37.29059 -36.55992 -34.45355 -34.08798 -32.21443 -31.10921 -30.21486 -29.69260 -28.35698 -27.53370 -26.08585 -25.48519 -23.85910 -22.84494 -22.23776 -20.42345 -19.66572 -18.53797 -18.35230 -17.56023 -17.34686 -17.08374 -16.30944 -16.00715 -15.74658 -15.42067 -15.07202 -14.98544 -14.76128 -14.48725 -14.11786 -13.86019 -13.57905 -13.43957 -13.34654 -13.03516 -12.91233 -12.48452 -12.23446 -12.16872 -11.92288 -11.77242 -11.61219 -11.38501 -11.34943 -11.24662 -10.92526 -10.83637 -10.62440 -10.48474 -10.12691 -10.07816 -9.56668 -9.43124 -8.72341 -8.68659 -8.25270 -8.08506 -7.88634 -6.32561 -4.40469 0.39876 1.13425 1.93996 2.76739 2.93394 3.16804 3.19736 3.26092 3.29975 3.46276 3.54453 4.23814 4.40712 4.44608 4.55914 4.63006 4.74492 4.80669 4.82218 4.94981 5.00955 5.10615 5.12479 5.22694 5.43086 5.49456 5.52096 5.61827 5.70929 5.79172 5.85042 5.99153 5.99798 6.07087 6.19733 6.25499 6.36848 6.38469 6.58320 6.83198 6.90339 6.98092 7.20747 7.25779 7.29401 7.70011 7.94447 8.00667 8.44762 8.62383 9.27972 9.38973 10.75142 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.002434 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.982638 B =11501.216728 C =12039.908047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.099 3.901 4 C -0.172 4.172 5 C -0.104 4.104 6 C 0.097 3.903 7 C -0.087 4.087 8 C -0.099 4.099 9 C -0.059 4.059 10 C -0.180 4.180 11 C 0.569 3.431 12 O -0.545 6.545 13 N -0.596 5.596 14 C 0.100 3.900 15 C -0.137 4.137 16 C 0.248 3.752 17 O -0.583 6.583 18 C -0.535 4.535 19 H 0.066 0.934 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.904 3.096 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.118 3.882 27 C 0.119 3.881 28 O -0.305 6.305 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.384 0.616 41 H 0.268 0.732 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.294 -2.524 6.546 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.054 3.946 4 C -0.190 4.190 5 C -0.122 4.122 6 C 0.053 3.947 7 C -0.088 4.088 8 C -0.117 4.117 9 C -0.077 4.077 10 C -0.183 4.183 11 C 0.356 3.644 12 O -0.424 6.424 13 N -0.327 5.327 14 C -0.023 4.023 15 C -0.176 4.176 16 C 0.208 3.792 17 O -0.393 6.393 18 C -0.573 4.573 19 H 0.084 0.916 20 C -0.130 4.130 21 N -0.535 5.535 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.004 4.004 27 C 0.044 3.956 28 O -0.219 6.219 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.234 0.766 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.072 -2.563 7.532 22.524 hybrid contribution 0.737 0.336 -1.159 1.414 sum -20.335 -2.227 6.373 21.426 Atomic orbital electron populations 1.23056 0.78442 1.03992 1.01304 1.86101 1.21290 1.26514 1.89163 1.18798 0.91976 0.84346 0.99441 1.21140 1.00113 0.91343 1.06435 1.20285 0.91467 0.97991 1.02486 1.18970 0.91545 0.84228 1.00005 1.18846 0.93062 0.92416 1.04468 1.20291 0.91459 0.97224 1.02753 1.22014 0.92104 0.96765 0.96862 1.22514 0.94778 0.96640 1.04365 1.17399 0.86170 0.77639 0.83205 1.90834 1.68498 1.52071 1.31038 1.48642 1.11348 1.67149 1.05591 1.22211 0.97337 1.00250 0.82475 1.23213 0.94686 1.02205 0.97491 1.19604 0.91508 0.80303 0.87807 1.86119 1.93581 1.23415 1.36154 1.21487 1.13111 1.24012 0.98704 0.91579 1.24992 0.96934 0.94764 0.96331 1.69653 1.40337 1.34395 1.09144 0.86349 0.82170 0.79625 0.78762 1.19557 1.20756 1.20821 1.22460 0.78604 0.99694 0.99605 1.21526 0.80729 0.97146 0.96168 1.86075 1.35527 1.28940 1.71388 0.88228 0.92673 0.92611 0.84730 0.84485 0.84197 0.84052 0.92344 0.92623 0.91243 0.89605 0.76562 0.92174 0.90827 0.90721 0.90302 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.13 10.49 -19.70 -0.21 -3.33 16 3 C 0.10 1.06 6.68 -39.24 -0.26 0.80 16 4 C -0.17 -1.57 9.02 -39.31 -0.35 -1.93 16 5 C -0.10 -1.06 10.00 -39.55 -0.40 -1.45 16 6 C 0.10 1.23 6.46 -38.68 -0.25 0.98 16 7 C -0.09 -1.13 5.80 -104.97 -0.61 -1.74 16 8 C -0.10 -1.16 9.79 -39.07 -0.38 -1.54 16 9 C -0.06 -0.84 9.72 -36.92 -0.36 -1.20 16 10 C -0.18 -2.77 4.89 -102.38 -0.50 -3.27 16 11 C 0.57 10.82 7.19 -13.05 -0.09 10.73 16 12 O -0.55 -12.07 17.34 5.17 0.09 -11.98 16 13 N -0.60 -11.75 3.33 -172.20 -0.57 -12.32 16 14 C 0.10 1.83 6.43 -3.04 -0.02 1.81 16 15 C -0.14 -2.91 5.52 -24.87 -0.14 -3.05 16 16 C 0.25 5.89 0.88 -89.62 -0.08 5.81 16 17 O -0.58 -14.72 13.17 -35.23 -0.46 -15.18 16 18 C -0.53 -13.66 8.25 -34.44 -0.28 -13.94 16 19 H 0.07 1.68 7.78 -52.48 -0.41 1.28 16 20 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 21 N -0.90 -22.72 10.76 55.43 0.60 -22.12 16 22 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.12 2.59 6.11 -2.53 -0.02 2.57 16 27 C 0.12 1.54 6.95 35.98 0.25 1.79 16 28 O -0.31 -4.02 10.42 -18.71 -0.19 -4.21 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.25 7.65 -51.93 -0.40 -0.15 16 31 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 32 H 0.13 0.84 6.25 -52.49 -0.33 0.51 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.14 1.97 8.06 -52.48 -0.42 1.55 16 36 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.47 8.03 -51.93 -0.42 1.06 16 39 H 0.09 1.91 7.69 -51.92 -0.40 1.51 16 40 H 0.38 9.71 7.24 45.56 0.33 10.04 16 41 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 42 H 0.07 1.72 7.99 -51.93 -0.41 1.31 16 43 H 0.07 1.57 8.03 -51.93 -0.42 1.15 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.12 1.39 8.10 -51.93 -0.42 0.97 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -29.91 376.61 -8.06 -37.96 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.36 Total: 11.37 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.60 Total: -0.75 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.02 Total: -34.45 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.78 Total: -34.71 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.91 -8.06 -37.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.391 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds