Wall clock time and date at job start Wed Apr 1 2020 03:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35987 * 116.99477 * 2 1 4 4 C 1.38993 * 119.88801 * 359.97438 * 3 2 1 5 5 C 1.38218 * 120.58358 * 180.02562 * 4 3 2 6 6 C 1.38334 * 119.92825 * 0.03154 * 5 4 3 7 7 C 1.40543 * 119.72039 * 359.92476 * 6 5 4 8 8 C 1.38396 * 119.88451 * 179.97438 * 3 2 1 9 9 C 1.47123 * 118.49440 * 180.11271 * 7 6 5 10 10 C 1.35591 * 117.88901 * 16.11461 * 9 7 6 11 11 C 1.46237 * 120.14898 * 180.90691 * 10 9 7 12 12 O 1.21724 * 119.99948 * 259.20694 * 11 10 9 13 13 N 1.34775 * 120.00026 * 79.20699 * 11 10 9 14 14 C 1.47019 * 125.64816 * 354.95457 * 13 11 10 15 15 C 1.54368 * 107.28670 * 181.13039 * 14 13 11 16 16 C 1.55156 * 102.92173 * 22.14126 * 15 14 13 17 17 O 1.42902 * 111.00728 * 82.63882 * 16 15 14 18 18 C 1.50703 * 111.00193 * 206.45115 * 16 15 14 19 19 H 1.08004 * 119.99501 * 115.41937 * 18 16 15 20 20 C 1.37872 * 120.00093 * 295.14068 * 18 16 15 21 21 N 1.31509 * 120.00278 * 0.27703 * 20 18 16 22 22 Si 1.86805 * 119.99793 * 180.27823 * 20 18 16 23 23 H 1.48498 * 109.47101 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47125 * 120.00075 * 22 20 18 25 25 H 1.48496 * 109.46828 * 239.99827 * 22 20 18 26 26 C 1.47424 * 125.64660 * 175.00366 * 13 11 10 27 27 C 1.50653 * 119.70408 * 1.17595 * 10 9 7 28 28 O 1.35669 * 121.24298 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.46793 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47471 * 299.99627 * 1 2 3 31 31 H 1.08998 * 109.47292 * 60.00412 * 1 2 3 32 32 H 1.07999 * 119.71086 * 0.04018 * 4 3 2 33 33 H 1.07994 * 120.03302 * 180.02562 * 5 4 3 34 34 H 1.07995 * 120.26354 * 359.96980 * 8 3 2 35 35 H 1.08006 * 121.05774 * 196.14176 * 9 7 6 36 36 H 1.09000 * 109.88314 * 300.51047 * 14 13 11 37 37 H 1.08999 * 109.88231 * 61.68072 * 14 13 11 38 38 H 1.08996 * 110.70674 * 263.79624 * 15 14 13 39 39 H 1.09010 * 110.75778 * 140.50615 * 15 14 13 40 40 H 0.96706 * 113.99770 * 64.57935 * 17 16 15 41 41 H 0.97003 * 120.00173 * 180.02562 * 21 20 18 42 42 H 1.08992 * 110.37011 * 36.99272 * 26 13 11 43 43 H 1.09005 * 110.36292 * 274.66627 * 26 13 11 44 44 H 1.09005 * 109.29975 * 88.53999 * 27 10 9 45 45 H 1.08997 * 109.30488 * 207.91926 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2869 2.3759 -0.0005 5 6 1.8992 3.6150 -0.0011 6 6 3.2798 3.7025 -0.0017 7 6 4.0524 2.5285 -0.0003 8 6 3.4285 1.2815 0.0005 9 6 5.5184 2.6530 0.0015 10 6 6.0525 3.8541 0.3343 11 6 7.5032 4.0385 0.3329 12 8 8.1212 4.0110 1.3811 13 7 8.1558 4.2390 -0.8292 14 6 7.5535 4.1916 -2.1694 15 6 8.6826 4.4522 -3.1893 16 6 9.9609 4.0721 -2.3964 17 8 10.1844 2.6610 -2.4307 18 6 11.1617 4.8190 -2.9172 19 1 11.6708 5.5311 -2.2845 20 6 11.6137 4.5893 -4.1992 21 7 10.9938 3.7222 -4.9696 22 14 13.1069 5.5095 -4.8421 23 1 13.6182 6.4214 -3.7875 24 1 14.1662 4.5369 -5.2124 25 1 12.7229 6.3021 -6.0376 26 6 9.5922 4.5411 -0.9668 27 6 5.1450 4.9959 0.7115 28 8 3.9087 4.9047 -0.0028 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2088 2.3117 -0.0003 33 1 1.3006 4.5138 -0.0011 34 1 4.0191 0.3773 0.0014 35 1 6.1491 1.8145 -0.2545 36 1 7.1161 3.2087 -2.3448 37 1 6.7875 4.9619 -2.2591 38 1 8.7061 5.5030 -3.4781 39 1 8.5675 3.8130 -4.0648 40 1 10.3703 2.3137 -3.3139 41 1 11.3121 3.5603 -5.8715 42 1 10.1689 3.9881 -0.2255 43 1 9.7662 5.6121 -0.8623 44 1 4.9494 4.9618 1.7833 45 1 5.6327 5.9396 0.4673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:55 Heat of formation + Delta-G solvation = -125.190571 kcal Electronic energy + Delta-G solvation = -30024.099925 eV Core-core repulsion = 25779.010107 eV Total energy + Delta-G solvation = -4245.089818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00850 -41.07283 -40.19345 -38.99340 -37.37600 -36.16690 -35.27873 -34.18684 -32.15813 -31.31684 -30.98093 -30.06579 -28.13432 -27.26935 -26.96523 -25.19425 -23.69643 -23.62618 -21.81369 -21.27562 -19.77639 -19.23329 -19.13809 -18.47570 -18.34883 -17.51041 -16.95985 -16.90495 -16.64218 -16.61409 -16.33432 -16.08263 -15.67211 -15.39606 -15.26469 -14.83383 -14.59933 -14.36344 -14.10720 -14.02110 -13.85970 -13.61215 -13.59723 -13.24492 -13.08549 -13.01736 -12.84217 -12.66471 -12.52181 -12.42363 -12.25555 -12.02489 -11.91743 -11.76974 -11.32691 -11.02878 -10.94738 -10.65502 -10.17663 -9.72285 -9.59650 -8.76343 -8.25307 -6.39956 -0.56611 0.30656 0.94116 1.30978 1.41241 1.45833 1.55606 1.93662 2.20183 2.38768 2.40195 2.69184 2.99315 3.27702 3.49368 3.57425 3.73731 3.80738 3.93141 3.98631 4.07693 4.18687 4.25124 4.28689 4.30794 4.42421 4.46564 4.55627 4.56165 4.61697 4.63745 4.75514 4.80572 4.84140 4.93347 5.06359 5.12272 5.18121 5.21561 5.34408 5.41356 5.46072 5.49352 5.75834 6.04423 6.16520 6.42923 6.44608 6.64058 6.90722 7.30630 7.39919 8.81160 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.002434 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.982638 B =11501.216728 C =12039.908047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.335 6.335 3 C 0.095 3.905 4 C -0.157 4.157 5 C -0.100 4.100 6 C 0.079 3.921 7 C -0.107 4.107 8 C -0.110 4.110 9 C -0.046 4.046 10 C -0.199 4.199 11 C 0.572 3.428 12 O -0.582 6.582 13 N -0.599 5.599 14 C 0.111 3.889 15 C -0.127 4.127 16 C 0.235 3.765 17 O -0.594 6.594 18 C -0.559 4.559 19 H 0.058 0.942 20 C 0.036 3.964 21 N -0.909 5.909 22 Si 0.962 3.038 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.275 1.275 26 C 0.122 3.878 27 C 0.124 3.876 28 O -0.309 6.309 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.170 0.830 33 H 0.162 0.838 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.380 0.620 41 H 0.271 0.729 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.176 -2.141 6.226 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.249 6.249 3 C 0.050 3.950 4 C -0.175 4.175 5 C -0.119 4.119 6 C 0.035 3.965 7 C -0.108 4.108 8 C -0.129 4.129 9 C -0.065 4.065 10 C -0.202 4.202 11 C 0.362 3.638 12 O -0.464 6.464 13 N -0.330 5.330 14 C -0.011 4.011 15 C -0.165 4.165 16 C 0.194 3.806 17 O -0.404 6.404 18 C -0.597 4.597 19 H 0.076 0.924 20 C -0.166 4.166 21 N -0.548 5.548 22 Si 0.787 3.213 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.201 1.201 26 C 0.000 4.000 27 C 0.049 3.951 28 O -0.223 6.223 29 H 0.134 0.866 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.187 0.813 33 H 0.179 0.821 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.230 0.770 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.987 -2.186 7.204 25.141 hybrid contribution 1.516 0.071 -1.058 1.850 sum -22.471 -2.115 6.146 23.392 Atomic orbital electron populations 1.23396 0.76165 1.05701 1.02599 1.86090 1.23686 1.26207 1.88959 1.18916 0.91758 0.85353 0.98944 1.21523 1.01756 0.90252 1.03980 1.20629 0.90602 0.99393 1.01228 1.19281 0.92545 0.83764 1.00943 1.18795 0.92078 0.93320 1.06573 1.20398 0.92516 0.96902 1.03063 1.22122 0.93290 0.96065 0.94991 1.22340 0.92559 0.98269 1.07048 1.17922 0.87566 0.76166 0.82174 1.90803 1.69761 1.53603 1.32217 1.48679 1.10396 1.67368 1.06506 1.22151 0.96616 1.01536 0.80827 1.23001 0.94461 1.01657 0.97413 1.19787 0.92277 0.79340 0.89147 1.86110 1.93744 1.24546 1.35965 1.21697 1.14252 1.24554 0.99197 0.92356 1.25620 0.99099 0.95453 0.96400 1.69716 1.41038 1.34722 1.09307 0.85454 0.79205 0.78462 0.78148 1.19695 1.20752 1.20097 1.22265 0.80057 0.99653 0.98016 1.21549 0.80376 0.96388 0.96756 1.86062 1.35306 1.29261 1.71664 0.86583 0.91216 0.91314 0.81301 0.82053 0.84096 0.84582 0.91764 0.89888 0.91375 0.90821 0.76991 0.91901 0.93110 0.90024 0.89228 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.34 -5.84 10.49 -93.40 -0.98 -6.82 16 3 C 0.10 1.82 6.68 22.49 0.15 1.97 16 4 C -0.16 -2.31 9.02 22.45 0.20 -2.11 16 5 C -0.10 -1.72 10.00 22.29 0.22 -1.50 16 6 C 0.08 1.85 6.46 22.86 0.15 2.00 16 7 C -0.11 -2.68 5.80 -20.09 -0.12 -2.79 16 8 C -0.11 -2.48 9.79 22.60 0.22 -2.26 16 9 C -0.05 -1.30 9.72 23.99 0.23 -1.07 16 10 C -0.20 -6.08 4.89 -18.41 -0.09 -6.17 16 11 C 0.57 22.08 7.19 86.32 0.62 22.71 16 12 O -0.58 -26.50 17.34 -4.42 -0.08 -26.58 16 13 N -0.60 -23.84 3.33 -816.93 -2.72 -26.55 16 14 C 0.11 4.00 6.43 86.75 0.56 4.56 16 15 C -0.13 -5.39 5.52 31.80 0.18 -5.21 16 16 C 0.23 11.37 0.88 -10.15 -0.01 11.36 16 17 O -0.59 -30.83 13.17 -148.98 -1.96 -32.79 16 18 C -0.56 -29.01 8.25 25.60 0.21 -28.79 16 19 H 0.06 3.03 7.78 -2.91 -0.02 3.01 16 20 C 0.04 1.80 5.29 84.65 0.45 2.24 16 21 N -0.91 -46.23 10.76 21.44 0.23 -46.00 16 22 Si 0.96 40.84 29.54 68.60 2.03 42.87 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 26 C 0.12 5.53 6.11 86.85 0.53 6.06 16 27 C 0.12 3.07 6.95 71.22 0.50 3.57 16 28 O -0.31 -7.58 10.42 -89.86 -0.94 -8.52 16 29 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.36 7.65 -2.39 -0.02 0.34 16 31 H 0.07 0.38 7.65 -2.39 -0.02 0.36 16 32 H 0.17 1.28 6.25 -2.91 -0.02 1.26 16 33 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 35 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 36 H 0.06 2.25 8.11 -2.39 -0.02 2.23 16 37 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.07 2.88 8.03 -2.39 -0.02 2.86 16 39 H 0.07 3.30 7.69 -2.38 -0.02 3.28 16 40 H 0.38 19.78 7.24 -74.05 -0.54 19.24 16 41 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 42 H 0.05 2.49 7.99 -2.39 -0.02 2.47 16 43 H 0.08 3.52 8.03 -2.38 -0.02 3.50 16 44 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 45 H 0.13 2.84 8.10 -2.39 -0.02 2.82 16 Total: -1.00 -64.95 376.61 1.19 -63.76 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: 0.49 Total: 34.85 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.11 Total: 5.79 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -2.49 Total: -72.55 kcal Atomic # 8 Polarization: -70.75 SS G_CDS: -3.95 Total: -74.71 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -64.95 1.19 -63.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.433 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds