Wall clock time and date at job start Wed Apr 1 2020 03:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35979 * 117.00153 * 2 1 4 4 C 1.38999 * 119.88631 * 359.97438 * 3 2 1 5 5 C 1.38215 * 120.58031 * 180.02562 * 4 3 2 6 6 C 1.38327 * 119.93436 * 0.02851 * 5 4 3 7 7 C 1.40553 * 119.71724 * 359.92693 * 6 5 4 8 8 C 1.38390 * 119.88467 * 179.97438 * 3 2 1 9 9 C 1.47123 * 118.49104 * 180.35364 * 7 6 5 10 10 C 1.35449 * 117.97780 * 15.62954 * 9 7 6 11 11 C 1.46239 * 120.17872 * 181.10296 * 10 9 7 12 12 O 1.21726 * 119.99710 * 255.25089 * 11 10 9 13 13 N 1.34777 * 120.00379 * 75.25316 * 11 10 9 14 14 C 1.47020 * 125.64308 * 4.82599 * 13 11 10 15 15 C 1.54334 * 107.26452 * 178.84921 * 14 13 11 16 16 C 1.55163 * 103.02203 * 338.14365 * 15 14 13 17 17 O 1.42900 * 111.00170 * 277.23212 * 16 15 14 18 18 C 1.50696 * 111.03692 * 153.39484 * 16 15 14 19 19 H 1.08002 * 119.99631 * 247.77897 * 18 16 15 20 20 C 1.37875 * 120.00282 * 67.78708 * 18 16 15 21 21 N 1.31511 * 119.99767 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00116 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46766 * 89.99783 * 22 20 18 24 24 H 1.48498 * 109.47422 * 209.99986 * 22 20 18 25 25 H 1.48505 * 109.46986 * 329.99930 * 22 20 18 26 26 C 1.47419 * 125.65255 * 185.13370 * 13 11 10 27 27 C 1.50648 * 119.67736 * 1.38295 * 10 9 7 28 28 O 1.35668 * 121.24887 * 179.97438 * 6 5 4 29 29 H 1.08997 * 109.46847 * 299.99626 * 1 2 3 30 30 H 1.08997 * 109.46939 * 59.99995 * 1 2 3 31 31 H 1.09001 * 109.47599 * 179.97438 * 1 2 3 32 32 H 1.07997 * 119.70650 * 0.04173 * 4 3 2 33 33 H 1.08003 * 120.03091 * 179.97438 * 5 4 3 34 34 H 1.07993 * 120.26592 * 0.02562 * 8 3 2 35 35 H 1.08005 * 121.05224 * 195.84070 * 9 7 6 36 36 H 1.08995 * 109.88776 * 298.39414 * 14 13 11 37 37 H 1.08999 * 109.88425 * 59.56406 * 14 13 11 38 38 H 1.08993 * 110.85382 * 219.67542 * 15 14 13 39 39 H 1.09008 * 110.51651 * 96.45289 * 15 14 13 40 40 H 0.96699 * 114.00390 * 292.19543 * 17 16 15 41 41 H 0.97004 * 119.99899 * 180.02562 * 21 20 18 42 42 H 1.09002 * 110.36530 * 322.93575 * 26 13 11 43 43 H 1.09005 * 110.36495 * 85.14187 * 26 13 11 44 44 H 1.09004 * 109.30803 * 207.94311 * 27 10 9 45 45 H 1.09003 * 109.30666 * 88.55148 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2871 2.3758 -0.0005 5 6 1.8996 3.6148 -0.0011 6 6 3.2801 3.7023 -0.0017 7 6 4.0527 2.5282 -0.0002 8 6 3.4285 1.2812 0.0005 9 6 5.5186 2.6526 0.0071 10 6 6.0528 3.8536 0.3342 11 6 7.5035 4.0378 0.3333 12 8 8.1114 4.0872 1.3868 13 7 8.1675 4.1528 -0.8339 14 6 7.5518 4.2112 -2.1677 15 6 8.6942 4.3717 -3.1929 16 6 9.8511 4.9548 -2.3389 17 8 9.7174 6.3701 -2.1936 18 6 11.1914 4.5994 -2.9289 19 1 11.8493 3.9216 -2.4053 20 6 11.5779 5.1396 -4.1371 21 7 10.7766 5.9647 -4.7749 22 14 13.2396 4.6997 -4.8682 23 1 13.0983 3.5001 -5.7321 24 1 13.7405 5.8380 -5.6797 25 1 14.2010 4.4110 -3.7738 26 6 9.6317 4.2345 -0.9851 27 6 5.1453 4.9974 0.7053 28 8 3.9091 4.9044 -0.0027 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2090 2.3117 -0.0003 33 1 1.3010 4.5138 -0.0019 34 1 4.0191 0.3770 0.0005 35 1 6.1503 1.8133 -0.2440 36 1 7.0025 3.2903 -2.3631 37 1 6.8790 5.0666 -2.2283 38 1 8.4110 5.0660 -3.9839 39 1 8.9725 3.4036 -3.6095 40 1 9.8463 6.8637 -3.0151 41 1 11.0483 6.3446 -5.6251 42 1 10.0652 4.8160 -0.1714 43 1 10.0668 3.2354 -1.0102 44 1 5.6332 5.9399 0.4567 45 1 4.9489 4.9685 1.7771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:58 Heat of formation + Delta-G solvation = -105.359599 kcal Electronic energy + Delta-G solvation = -29994.022903 eV Core-core repulsion = 25749.793021 eV Total energy + Delta-G solvation = -4244.229882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.06035 -39.81625 -39.18084 -37.28791 -36.57507 -34.47989 -34.10089 -32.17477 -31.12064 -30.22141 -29.72215 -28.35347 -27.55090 -26.08197 -25.49292 -23.87021 -22.85781 -22.24456 -20.44183 -19.64329 -18.54762 -18.37365 -17.55921 -17.37198 -17.05245 -16.35788 -16.02716 -15.75096 -15.47216 -15.02207 -14.89936 -14.74481 -14.60391 -14.11709 -13.91730 -13.49803 -13.44331 -13.33579 -13.07510 -12.91629 -12.43596 -12.36822 -12.08455 -11.87893 -11.82736 -11.62046 -11.37964 -11.36590 -11.25634 -10.90262 -10.81230 -10.64872 -10.51934 -10.14849 -10.07288 -9.57595 -9.44239 -8.72713 -8.70049 -8.25510 -8.08272 -7.88932 -6.33480 -4.41423 0.38329 1.12685 1.91662 2.77179 2.91935 3.17228 3.20840 3.25251 3.28886 3.46548 3.53710 4.23064 4.39440 4.43525 4.54861 4.61381 4.73761 4.79238 4.80806 4.93966 5.03876 5.09186 5.11233 5.25254 5.43240 5.49611 5.51624 5.60504 5.70683 5.78297 5.83814 5.98119 5.99473 6.05068 6.18701 6.25286 6.34411 6.38945 6.58465 6.81913 6.90290 6.97903 7.21789 7.25819 7.28279 7.69846 7.93009 7.99973 8.44185 8.60929 9.27680 9.43982 10.74260 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.002392 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.405328 B =11703.623508 C =12121.783799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.098 3.902 4 C -0.171 4.171 5 C -0.104 4.104 6 C 0.099 3.901 7 C -0.088 4.088 8 C -0.099 4.099 9 C -0.062 4.062 10 C -0.175 4.175 11 C 0.568 3.432 12 O -0.545 6.545 13 N -0.596 5.596 14 C 0.101 3.899 15 C -0.139 4.139 16 C 0.250 3.750 17 O -0.584 6.584 18 C -0.536 4.536 19 H 0.066 0.934 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.905 3.095 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.117 3.883 27 C 0.118 3.882 28 O -0.304 6.304 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.386 0.614 41 H 0.270 0.730 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.121 0.879 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.614 -7.676 6.105 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.054 3.946 4 C -0.190 4.190 5 C -0.122 4.122 6 C 0.054 3.946 7 C -0.089 4.089 8 C -0.118 4.118 9 C -0.081 4.081 10 C -0.178 4.178 11 C 0.355 3.645 12 O -0.424 6.424 13 N -0.327 5.327 14 C -0.022 4.022 15 C -0.178 4.178 16 C 0.209 3.791 17 O -0.394 6.394 18 C -0.574 4.574 19 H 0.084 0.916 20 C -0.130 4.130 21 N -0.537 5.537 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.004 4.004 27 C 0.043 3.957 28 O -0.218 6.218 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.238 0.762 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.139 0.861 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.419 -7.706 7.085 22.946 hybrid contribution 0.817 -0.151 -1.172 1.437 sum -19.602 -7.856 5.912 21.930 Atomic orbital electron populations 1.23055 0.78429 1.03980 1.01329 1.86092 1.21300 1.26535 1.89192 1.18791 0.91977 0.84339 0.99540 1.21144 1.00122 0.91338 1.06370 1.20293 0.91484 0.98019 1.02426 1.18991 0.91571 0.84265 0.99793 1.18833 0.93029 0.92415 1.04592 1.20263 0.91444 0.97144 1.02948 1.21920 0.92138 0.96710 0.97343 1.22505 0.94847 0.96606 1.03845 1.17400 0.86090 0.77750 0.83227 1.90835 1.69215 1.51777 1.30614 1.48628 1.09082 1.69297 1.05682 1.22191 0.97444 0.99944 0.82623 1.23223 0.95016 1.02204 0.97328 1.19564 0.92180 0.79630 0.87701 1.86094 1.94493 1.19196 1.39664 1.21465 1.02063 1.28638 1.05230 0.91594 1.24995 0.97651 0.94148 0.96231 1.69560 1.36581 1.30973 1.16568 0.86385 0.83282 0.78073 0.79068 1.20446 1.20984 1.19650 1.22468 0.77812 1.00115 1.00009 1.21508 0.80660 0.97310 0.96241 1.86013 1.35334 1.28875 1.71596 0.92661 0.92605 0.88237 0.84725 0.84444 0.84278 0.84221 0.92787 0.92154 0.89735 0.91329 0.76165 0.92020 0.90775 0.90837 0.86113 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.04 10.49 -19.67 -0.21 -3.24 16 3 C 0.10 1.02 6.68 -39.24 -0.26 0.76 16 4 C -0.17 -1.55 9.02 -39.31 -0.35 -1.91 16 5 C -0.10 -1.06 10.00 -39.56 -0.40 -1.46 16 6 C 0.10 1.25 6.47 -38.68 -0.25 1.00 16 7 C -0.09 -1.11 5.80 -104.97 -0.61 -1.72 16 8 C -0.10 -1.12 9.79 -39.08 -0.38 -1.51 16 9 C -0.06 -0.85 9.63 -36.97 -0.36 -1.21 16 10 C -0.17 -2.69 4.88 -102.43 -0.50 -3.19 16 11 C 0.57 10.82 7.20 -13.05 -0.09 10.72 16 12 O -0.55 -12.06 17.34 5.17 0.09 -11.97 16 13 N -0.60 -11.75 3.33 -172.22 -0.57 -12.33 16 14 C 0.10 1.85 6.45 -3.06 -0.02 1.83 16 15 C -0.14 -2.95 5.64 -24.89 -0.14 -3.09 16 16 C 0.25 5.94 0.89 -89.62 -0.08 5.86 16 17 O -0.58 -14.84 13.18 -35.23 -0.46 -15.30 16 18 C -0.54 -13.67 8.25 -34.44 -0.28 -13.96 16 19 H 0.07 1.67 7.77 -52.49 -0.41 1.26 16 20 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 21 N -0.90 -22.79 10.79 55.43 0.60 -22.19 16 22 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 C 0.12 2.58 6.10 -2.53 -0.02 2.57 16 27 C 0.12 1.59 6.94 35.98 0.25 1.84 16 28 O -0.30 -4.13 10.40 -18.70 -0.19 -4.32 16 29 H 0.05 0.24 7.65 -51.93 -0.40 -0.16 16 30 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.14 0.83 6.25 -52.49 -0.33 0.50 16 33 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 34 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.05 0.87 8.00 -51.93 -0.42 0.46 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.88 7.85 -51.93 -0.41 1.47 16 39 H 0.07 1.44 8.03 -51.92 -0.42 1.03 16 40 H 0.39 9.90 6.93 45.56 0.32 10.22 16 41 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 42 H 0.07 1.74 7.99 -51.93 -0.41 1.32 16 43 H 0.07 1.55 8.02 -51.93 -0.42 1.13 16 44 H 0.12 1.58 8.10 -51.93 -0.42 1.16 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -29.83 376.40 -8.08 -37.91 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -5.38 Total: 11.49 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -2.60 Total: -0.59 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.03 Total: -34.51 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.78 Total: -34.84 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.83 -8.08 -37.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.453 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds