Wall clock time and date at job start Wed Apr 1 2020 03:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35979 * 117.00153 * 2 1 4 4 C 1.38999 * 119.88631 * 359.97438 * 3 2 1 5 5 C 1.38215 * 120.58031 * 180.02562 * 4 3 2 6 6 C 1.38327 * 119.93436 * 0.02851 * 5 4 3 7 7 C 1.40553 * 119.71724 * 359.92693 * 6 5 4 8 8 C 1.38390 * 119.88467 * 179.97438 * 3 2 1 9 9 C 1.47123 * 118.49104 * 180.35364 * 7 6 5 10 10 C 1.35449 * 117.97780 * 15.62954 * 9 7 6 11 11 C 1.46239 * 120.17872 * 181.10296 * 10 9 7 12 12 O 1.21726 * 119.99710 * 255.25089 * 11 10 9 13 13 N 1.34777 * 120.00379 * 75.25316 * 11 10 9 14 14 C 1.47020 * 125.64308 * 4.82599 * 13 11 10 15 15 C 1.54334 * 107.26452 * 178.84921 * 14 13 11 16 16 C 1.55163 * 103.02203 * 338.14365 * 15 14 13 17 17 O 1.42900 * 111.00170 * 277.23212 * 16 15 14 18 18 C 1.50696 * 111.03692 * 153.39484 * 16 15 14 19 19 H 1.08002 * 119.99631 * 247.77897 * 18 16 15 20 20 C 1.37875 * 120.00282 * 67.78708 * 18 16 15 21 21 N 1.31511 * 119.99767 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00116 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46766 * 89.99783 * 22 20 18 24 24 H 1.48498 * 109.47422 * 209.99986 * 22 20 18 25 25 H 1.48505 * 109.46986 * 329.99930 * 22 20 18 26 26 C 1.47419 * 125.65255 * 185.13370 * 13 11 10 27 27 C 1.50648 * 119.67736 * 1.38295 * 10 9 7 28 28 O 1.35668 * 121.24887 * 179.97438 * 6 5 4 29 29 H 1.08997 * 109.46847 * 299.99626 * 1 2 3 30 30 H 1.08997 * 109.46939 * 59.99995 * 1 2 3 31 31 H 1.09001 * 109.47599 * 179.97438 * 1 2 3 32 32 H 1.07997 * 119.70650 * 0.04173 * 4 3 2 33 33 H 1.08003 * 120.03091 * 179.97438 * 5 4 3 34 34 H 1.07993 * 120.26592 * 0.02562 * 8 3 2 35 35 H 1.08005 * 121.05224 * 195.84070 * 9 7 6 36 36 H 1.08995 * 109.88776 * 298.39414 * 14 13 11 37 37 H 1.08999 * 109.88425 * 59.56406 * 14 13 11 38 38 H 1.08993 * 110.85382 * 219.67542 * 15 14 13 39 39 H 1.09008 * 110.51651 * 96.45289 * 15 14 13 40 40 H 0.96699 * 114.00390 * 292.19543 * 17 16 15 41 41 H 0.97004 * 119.99899 * 180.02562 * 21 20 18 42 42 H 1.09002 * 110.36530 * 322.93575 * 26 13 11 43 43 H 1.09005 * 110.36495 * 85.14187 * 26 13 11 44 44 H 1.09004 * 109.30803 * 207.94311 * 27 10 9 45 45 H 1.09003 * 109.30666 * 88.55148 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2871 2.3758 -0.0005 5 6 1.8996 3.6148 -0.0011 6 6 3.2801 3.7023 -0.0017 7 6 4.0527 2.5282 -0.0002 8 6 3.4285 1.2812 0.0005 9 6 5.5186 2.6526 0.0071 10 6 6.0528 3.8536 0.3342 11 6 7.5035 4.0378 0.3333 12 8 8.1114 4.0872 1.3868 13 7 8.1675 4.1528 -0.8339 14 6 7.5518 4.2112 -2.1677 15 6 8.6942 4.3717 -3.1929 16 6 9.8511 4.9548 -2.3389 17 8 9.7174 6.3701 -2.1936 18 6 11.1914 4.5994 -2.9289 19 1 11.8493 3.9216 -2.4053 20 6 11.5779 5.1396 -4.1371 21 7 10.7766 5.9647 -4.7749 22 14 13.2396 4.6997 -4.8682 23 1 13.0983 3.5001 -5.7321 24 1 13.7405 5.8380 -5.6797 25 1 14.2010 4.4110 -3.7738 26 6 9.6317 4.2345 -0.9851 27 6 5.1453 4.9974 0.7053 28 8 3.9091 4.9044 -0.0027 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2090 2.3117 -0.0003 33 1 1.3010 4.5138 -0.0019 34 1 4.0191 0.3770 0.0005 35 1 6.1503 1.8133 -0.2440 36 1 7.0025 3.2903 -2.3631 37 1 6.8790 5.0666 -2.2283 38 1 8.4110 5.0660 -3.9839 39 1 8.9725 3.4036 -3.6095 40 1 9.8463 6.8637 -3.0151 41 1 11.0483 6.3446 -5.6251 42 1 10.0652 4.8160 -0.1714 43 1 10.0668 3.2354 -1.0102 44 1 5.6332 5.9399 0.4567 45 1 4.9489 4.9685 1.7771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:57 Heat of formation + Delta-G solvation = -125.085447 kcal Electronic energy + Delta-G solvation = -29994.878280 eV Core-core repulsion = 25749.793021 eV Total energy + Delta-G solvation = -4245.085259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.02333 -41.06903 -40.20305 -38.98607 -37.38826 -36.18340 -35.29026 -34.14615 -32.16193 -31.32981 -30.99257 -30.06094 -28.13880 -27.27850 -26.96074 -25.19623 -23.70437 -23.61996 -21.82118 -21.25273 -19.78164 -19.28064 -19.10962 -18.49444 -18.32916 -17.50668 -17.05610 -16.93232 -16.66681 -16.47448 -16.23372 -16.13065 -15.71644 -15.52815 -15.11344 -14.84630 -14.56634 -14.38164 -14.11924 -14.05140 -13.78282 -13.69692 -13.56386 -13.23981 -13.08824 -13.01956 -12.85545 -12.63414 -12.50635 -12.42551 -12.28465 -12.02986 -11.91968 -11.76203 -11.33712 -11.03302 -10.95015 -10.65157 -10.17549 -9.72177 -9.59017 -8.76284 -8.25889 -6.40591 -0.56758 0.30909 0.93763 1.32198 1.42444 1.45891 1.54700 1.95197 2.19777 2.39073 2.40079 2.69236 2.98596 3.28239 3.48992 3.57966 3.74722 3.80876 3.93423 3.99325 4.05798 4.19077 4.24283 4.27757 4.30447 4.42836 4.46769 4.55157 4.56596 4.61900 4.63788 4.75962 4.80844 4.84094 4.94049 5.05750 5.11598 5.18774 5.21744 5.34600 5.41017 5.46718 5.48404 5.75926 6.02829 6.17444 6.43145 6.44874 6.63089 6.91177 7.30692 7.43719 8.80592 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.002392 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.405328 B =11703.623508 C =12121.783799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.334 6.334 3 C 0.095 3.905 4 C -0.157 4.157 5 C -0.103 4.103 6 C 0.077 3.923 7 C -0.108 4.108 8 C -0.106 4.106 9 C -0.039 4.039 10 C -0.202 4.202 11 C 0.572 3.428 12 O -0.582 6.582 13 N -0.599 5.599 14 C 0.112 3.888 15 C -0.129 4.129 16 C 0.236 3.764 17 O -0.595 6.595 18 C -0.560 4.560 19 H 0.059 0.941 20 C 0.035 3.965 21 N -0.910 5.910 22 Si 0.963 3.037 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.275 1.275 26 C 0.122 3.878 27 C 0.123 3.877 28 O -0.311 6.311 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.382 0.618 41 H 0.273 0.727 42 H 0.051 0.949 43 H 0.080 0.920 44 H 0.118 0.882 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.226 -9.002 5.644 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.248 6.248 3 C 0.050 3.950 4 C -0.175 4.175 5 C -0.121 4.121 6 C 0.033 3.967 7 C -0.109 4.109 8 C -0.124 4.124 9 C -0.058 4.058 10 C -0.205 4.205 11 C 0.362 3.638 12 O -0.464 6.464 13 N -0.329 5.329 14 C -0.010 4.010 15 C -0.168 4.168 16 C 0.196 3.804 17 O -0.406 6.406 18 C -0.598 4.598 19 H 0.078 0.922 20 C -0.166 4.166 21 N -0.550 5.550 22 Si 0.788 3.212 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.200 1.200 26 C 0.000 4.000 27 C 0.048 3.952 28 O -0.225 6.225 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.186 0.814 33 H 0.176 0.824 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.233 0.767 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.136 0.864 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.066 -9.043 6.615 25.644 hybrid contribution 1.478 0.158 -1.022 1.804 sum -21.588 -8.885 5.594 24.006 Atomic orbital electron populations 1.23390 0.76219 1.05703 1.02547 1.86084 1.23616 1.26129 1.88957 1.18921 0.91875 0.85262 0.98965 1.21514 1.01744 0.90275 1.03962 1.20610 0.90647 0.99405 1.01429 1.19332 0.92597 0.83844 1.00948 1.18809 0.92230 0.93192 1.06634 1.20404 0.92388 0.96889 1.02740 1.22126 0.93194 0.96017 0.94472 1.22250 0.92513 0.98286 1.07453 1.17912 0.87467 0.76255 0.82169 1.90801 1.70482 1.53332 1.31793 1.48665 1.08101 1.69565 1.06614 1.22128 0.96327 1.01594 0.80990 1.23017 0.94996 1.01488 0.97264 1.19758 0.92733 0.78907 0.89039 1.86085 1.94581 1.20340 1.39562 1.21689 1.03069 1.29192 1.05843 0.92246 1.25635 1.00501 0.94050 0.96433 1.69626 1.37601 1.31076 1.16691 0.85485 0.79581 0.77961 0.78147 1.19716 1.20677 1.20009 1.22268 0.79601 0.99811 0.98360 1.21439 0.80562 0.96457 0.96759 1.85993 1.35077 1.29559 1.71892 0.91311 0.91373 0.86523 0.81413 0.82376 0.83555 0.83469 0.89976 0.91675 0.90976 0.91326 0.76665 0.91781 0.93039 0.90182 0.86412 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -5.44 10.49 -93.31 -0.98 -6.42 16 3 C 0.09 1.72 6.68 22.49 0.15 1.87 16 4 C -0.16 -2.28 9.02 22.45 0.20 -2.08 16 5 C -0.10 -1.80 10.00 22.29 0.22 -1.58 16 6 C 0.08 1.83 6.47 22.86 0.15 1.98 16 7 C -0.11 -2.58 5.80 -20.09 -0.12 -2.70 16 8 C -0.11 -2.20 9.79 22.60 0.22 -1.98 16 9 C -0.04 -1.04 9.63 23.96 0.23 -0.81 16 10 C -0.20 -6.17 4.88 -18.44 -0.09 -6.26 16 11 C 0.57 22.11 7.20 86.32 0.62 22.73 16 12 O -0.58 -26.52 17.34 -4.43 -0.08 -26.60 16 13 N -0.60 -23.85 3.33 -816.99 -2.72 -26.57 16 14 C 0.11 4.03 6.45 86.73 0.56 4.59 16 15 C -0.13 -5.48 5.64 31.79 0.18 -5.30 16 16 C 0.24 11.45 0.89 -10.15 -0.01 11.44 16 17 O -0.60 -31.10 13.18 -148.98 -1.96 -33.07 16 18 C -0.56 -29.03 8.25 25.60 0.21 -28.82 16 19 H 0.06 3.07 7.77 -2.91 -0.02 3.05 16 20 C 0.03 1.76 5.30 84.65 0.45 2.21 16 21 N -0.91 -46.43 10.79 21.45 0.23 -46.20 16 22 Si 0.96 40.77 29.54 68.60 2.03 42.80 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 25 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 26 C 0.12 5.51 6.10 86.85 0.53 6.04 16 27 C 0.12 3.30 6.94 71.22 0.49 3.79 16 28 O -0.31 -8.12 10.40 -89.84 -0.93 -9.06 16 29 H 0.07 0.33 7.65 -2.39 -0.02 0.31 16 30 H 0.07 0.34 7.65 -2.39 -0.02 0.32 16 31 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.17 1.27 6.25 -2.91 -0.02 1.25 16 33 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 36 H 0.08 2.52 8.00 -2.39 -0.02 2.50 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.07 3.23 7.85 -2.39 -0.02 3.21 16 39 H 0.07 2.88 8.03 -2.38 -0.02 2.86 16 40 H 0.38 20.15 6.93 -74.06 -0.51 19.63 16 41 H 0.27 13.23 8.31 -92.71 -0.77 12.46 16 42 H 0.05 2.52 7.99 -2.39 -0.02 2.50 16 43 H 0.08 3.46 8.02 -2.38 -0.02 3.44 16 44 H 0.12 3.12 8.10 -2.38 -0.02 3.10 16 45 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -64.77 376.40 1.22 -63.55 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.52 Total: 35.21 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 5.12 Total: 6.36 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -2.49 Total: -72.77 kcal Atomic # 8 Polarization: -71.19 SS G_CDS: -3.95 Total: -75.14 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -64.77 1.22 -63.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.537 kcal (2) G-P(sol) polarization free energy of solvation -64.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds