Wall clock time and date at job start Wed Apr 1 2020 03:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 117.00474 * 2 1 4 4 O 1.20831 * 119.99366 * 359.72475 * 3 2 1 5 5 C 1.50693 * 120.00472 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46932 * 59.72316 * 5 3 2 7 7 C 1.52996 * 109.47306 * 179.72882 * 5 3 2 8 8 N 1.46502 * 109.46959 * 294.99870 * 7 5 3 9 9 S 1.65594 * 120.00169 * 165.00093 * 8 7 5 10 10 O 1.42106 * 104.27963 * 181.07281 * 9 8 7 11 11 O 1.42102 * 104.27888 * 308.92897 * 9 8 7 12 12 C 1.81405 * 104.44943 * 65.00148 * 9 8 7 13 13 C 1.53001 * 109.46994 * 173.81209 * 12 9 8 14 14 C 1.50709 * 115.54928 * 65.19680 * 13 12 9 15 15 H 1.07997 * 119.99711 * 264.77965 * 14 13 12 16 16 C 1.37877 * 120.00162 * 84.78134 * 14 13 12 17 17 N 1.31519 * 119.99725 * 352.23305 * 16 14 13 18 18 Si 1.86793 * 119.99955 * 172.23238 * 16 14 13 19 19 H 1.48499 * 109.47286 * 90.00091 * 18 16 14 20 20 H 1.48495 * 109.47251 * 210.00137 * 18 16 14 21 21 H 1.48500 * 109.47093 * 330.00068 * 18 16 14 22 22 C 1.52994 * 117.50309 * 279.52263 * 13 12 9 23 23 C 1.52995 * 117.49790 * 210.86180 * 13 12 9 24 24 C 1.53004 * 109.47212 * 299.72751 * 5 3 2 25 25 C 1.53004 * 109.46975 * 64.99924 * 24 5 3 26 26 C 1.53006 * 117.49684 * 243.62333 * 25 24 5 27 27 C 1.53000 * 60.00083 * 252.51360 * 26 25 24 28 28 H 1.09008 * 109.46463 * 60.00166 * 1 2 3 29 29 H 1.08994 * 109.47264 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47294 * 300.00591 * 1 2 3 31 31 H 1.08996 * 109.47548 * 54.99646 * 7 5 3 32 32 H 1.09002 * 109.46952 * 175.00672 * 7 5 3 33 33 H 0.97005 * 119.99925 * 345.00303 * 8 7 5 34 34 H 1.09003 * 109.46915 * 293.80893 * 12 9 8 35 35 H 1.08996 * 109.47430 * 53.81281 * 12 9 8 36 36 H 0.97001 * 119.99565 * 185.02665 * 17 16 14 37 37 H 1.09006 * 117.49633 * 0.02562 * 22 13 12 38 38 H 1.09000 * 117.50265 * 145.01807 * 22 13 12 39 39 H 1.09005 * 117.50109 * 214.98354 * 23 13 12 40 40 H 1.09004 * 117.50020 * 359.97438 * 23 13 12 41 41 H 1.09000 * 109.47291 * 184.99588 * 24 5 3 42 42 H 1.08998 * 109.46843 * 305.00131 * 24 5 3 43 43 H 1.08996 * 115.55082 * 29.32812 * 25 24 5 44 44 H 1.09005 * 117.49943 * 359.97438 * 26 25 24 45 45 H 1.08993 * 117.50162 * 145.02148 * 26 25 24 46 46 H 1.09000 * 117.49773 * 252.51485 * 27 26 25 47 47 H 1.08999 * 117.52246 * 107.48068 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0050 5 6 3.5664 1.2749 0.0006 6 1 3.9566 0.7762 -0.8867 7 6 4.0002 2.7420 -0.0064 8 7 3.5797 3.3696 -1.2616 9 16 3.5766 5.0196 -1.4020 10 8 3.0968 5.2585 -2.7181 11 8 2.8506 5.4667 -0.2652 12 6 5.3237 5.4887 -1.2665 13 6 5.4716 6.9876 -1.5357 14 6 4.8159 7.8967 -0.5283 15 1 3.8222 8.2780 -0.7114 16 6 5.4846 8.2417 0.6270 17 7 6.6265 7.6608 0.9243 18 14 4.7689 9.5343 1.7699 19 1 3.8894 8.8780 2.7704 20 1 5.8714 10.2422 2.4688 21 1 3.9768 10.5102 0.9791 22 6 5.4867 7.4451 -2.9956 23 6 6.7777 7.4652 -2.1734 24 6 4.1126 0.5875 1.2536 25 6 3.7856 -0.9062 1.1995 26 6 2.8569 -1.4656 2.2792 27 6 4.3510 -1.7938 2.3102 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.5374 3.2618 0.8325 32 1 5.0849 2.8005 0.0835 33 1 3.3031 2.8186 -2.0105 34 1 5.6838 5.2626 -0.2628 35 1 5.9079 4.9290 -1.9968 36 1 7.0605 7.8492 1.7710 37 1 5.3908 6.6782 -3.7643 38 1 5.0227 8.4037 -3.2274 39 1 7.1626 8.4372 -1.8647 40 1 7.5318 6.7117 -2.4008 41 1 5.1934 0.7213 1.2995 42 1 3.6540 1.0280 2.1388 43 1 3.7122 -1.3355 0.2003 44 1 2.4793 -0.7696 3.0283 45 1 2.1723 -2.2630 1.9904 46 1 4.6493 -2.8073 2.0416 47 1 4.9563 -1.3138 3.0790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593642580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:24 Heat of formation + Delta-G solvation = -114.467654 kcal Electronic energy + Delta-G solvation = -29476.789153 eV Core-core repulsion = 25367.608267 eV Total energy + Delta-G solvation = -4109.180886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.71339 -37.93535 -36.87811 -36.71832 -36.13097 -35.36394 -34.91942 -32.22033 -32.01477 -28.12682 -27.93230 -26.30181 -25.41931 -23.81124 -22.54237 -21.19081 -20.90025 -20.45834 -19.63172 -18.58025 -17.85556 -17.08819 -16.64117 -16.49059 -16.35344 -15.68915 -15.47860 -15.03832 -14.71379 -14.59171 -14.22951 -14.09257 -13.72343 -13.55169 -13.11605 -13.09715 -12.78437 -12.57571 -12.18732 -11.90369 -11.85410 -11.79221 -11.71981 -11.43686 -11.19189 -11.10603 -11.01336 -10.94126 -10.91112 -10.84224 -10.53240 -10.45490 -10.42410 -10.36346 -10.07605 -10.02705 -9.70009 -9.15848 -8.92706 -8.53548 -8.06073 -6.11762 -4.21545 1.15050 2.20881 2.61489 3.33121 3.38673 3.44193 3.49475 3.61796 4.21150 4.40110 4.43768 4.57187 4.64552 4.76035 4.83658 4.92702 4.99503 5.04907 5.07324 5.11755 5.18516 5.25102 5.29539 5.38491 5.43994 5.49780 5.51670 5.61129 5.68202 5.71229 5.85793 5.92102 6.00765 6.06545 6.12488 6.28747 6.35932 6.39561 6.63418 6.74696 7.00349 7.24483 7.31707 7.41217 7.76171 7.83287 8.23371 8.83890 9.49393 10.95968 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.003208 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.064235 B = 8726.229439 C = 9188.815872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.352 6.352 3 C 0.456 3.544 4 O -0.482 6.482 5 C -0.081 4.081 6 H 0.115 0.885 7 C 0.130 3.870 8 N -1.128 6.128 9 S 2.609 3.391 10 O -0.976 6.976 11 O -0.943 6.943 12 C -0.556 4.556 13 C 0.044 3.956 14 C -0.515 4.515 15 H 0.068 0.932 16 C 0.082 3.918 17 N -0.875 5.875 18 Si 0.891 3.109 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.270 1.270 22 C -0.209 4.209 23 C -0.141 4.141 24 C -0.084 4.084 25 C -0.144 4.144 26 C -0.171 4.171 27 C -0.184 4.184 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.406 0.594 34 H 0.133 0.867 35 H 0.099 0.901 36 H 0.262 0.738 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.232 -21.024 0.262 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.269 6.269 3 C 0.297 3.703 4 O -0.367 6.367 5 C -0.102 4.102 6 H 0.133 0.867 7 C 0.003 3.997 8 N -0.884 5.884 9 S 2.706 3.294 10 O -0.966 6.966 11 O -0.933 6.933 12 C -0.689 4.689 13 C 0.041 3.959 14 C -0.552 4.552 15 H 0.086 0.914 16 C -0.122 4.122 17 N -0.511 5.511 18 Si 0.718 3.282 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.194 1.194 22 C -0.246 4.246 23 C -0.180 4.180 24 C -0.122 4.122 25 C -0.163 4.163 26 C -0.208 4.208 27 C -0.221 4.221 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.238 0.762 34 H 0.151 0.849 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.127 0.873 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.040 -20.035 0.437 20.443 hybrid contribution 0.083 0.119 0.456 0.478 sum -3.958 -19.917 0.893 20.326 Atomic orbital electron populations 1.23216 0.77008 1.03195 1.02573 1.86547 1.22731 1.33297 1.84321 1.23648 0.91888 0.81567 0.73230 1.90799 1.66651 1.36016 1.43188 1.21389 0.88162 0.98296 1.02331 0.86669 1.21178 0.99689 0.90814 0.88040 1.55871 1.84378 1.27572 1.20551 1.05107 0.78593 0.71566 0.74136 1.93496 1.79822 1.83480 1.39843 1.93543 1.68923 1.78654 1.52165 1.30016 1.21662 1.07113 1.10136 1.18269 0.99701 0.87169 0.90723 1.20536 1.02037 1.29063 1.03578 0.91372 1.24937 0.94165 0.95718 0.97414 1.69981 1.16394 1.42132 1.22600 0.86587 0.78794 0.81895 0.80962 1.20028 1.21090 1.19435 1.23195 1.03891 1.02394 0.95112 1.22550 0.90218 1.01799 1.03478 1.21188 1.02217 0.92831 0.95959 1.22222 1.04579 0.93844 0.95605 1.22927 0.92769 1.03458 1.01605 1.22995 0.96826 1.00521 1.01764 0.92072 0.88477 0.92022 0.89124 0.90098 0.76180 0.84892 0.88287 0.92790 0.90689 0.89547 0.89606 0.91541 0.89129 0.90647 0.87282 0.89191 0.89032 0.88977 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -3.63 8.46 -39.27 -0.33 -3.96 16 3 C 0.46 5.75 7.08 36.00 0.26 6.01 16 4 O -0.48 -8.19 15.10 -18.75 -0.28 -8.47 16 5 C -0.08 -0.82 2.31 -91.78 -0.21 -1.03 16 6 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 7 C 0.13 1.70 5.08 -4.04 -0.02 1.68 16 8 N -1.13 -17.51 5.03 -10.61 -0.05 -17.56 16 9 S 2.61 54.93 5.19 -107.50 -0.56 54.37 16 10 O -0.98 -22.44 18.08 -57.54 -1.04 -23.48 16 11 O -0.94 -23.77 17.17 -57.54 -0.99 -24.75 16 12 C -0.56 -11.68 5.93 37.16 0.22 -11.45 16 13 C 0.04 1.07 1.32 -155.66 -0.21 0.87 16 14 C -0.52 -14.29 8.18 -34.44 -0.28 -14.57 16 15 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 16 C 0.08 2.26 5.38 -17.82 -0.10 2.17 16 17 N -0.88 -24.00 12.98 55.43 0.72 -23.28 16 18 Si 0.89 21.62 29.55 -169.99 -5.02 16.59 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.21 -4.65 9.96 -26.70 -0.27 -4.92 16 23 C -0.14 -3.23 9.49 -26.70 -0.25 -3.49 16 24 C -0.08 -0.69 4.95 -26.73 -0.13 -0.82 16 25 C -0.14 -1.08 4.12 -90.61 -0.37 -1.46 16 26 C -0.17 -1.28 9.69 -26.73 -0.26 -1.54 16 27 C -0.18 -1.26 10.25 -26.73 -0.27 -1.53 16 28 H 0.06 0.56 8.13 -51.92 -0.42 0.14 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 1.40 7.51 -51.93 -0.39 1.01 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.41 5.41 8.60 -34.47 -0.30 5.11 16 34 H 0.13 2.84 8.14 -51.92 -0.42 2.42 16 35 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 36 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 37 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 39 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 43 H 0.11 0.79 8.02 -51.93 -0.42 0.38 16 44 H 0.09 0.72 8.03 -51.93 -0.42 0.30 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 405.44 15.07 6.11 6.11 Total: -1.00 -35.75 405.44 -10.09 -45.84 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.81 Total: 7.32 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: -0.83 Total: -28.73 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.67 Total: -40.84 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -2.64 Total: -60.66 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 54.93 SS G_CDS: -0.56 Total: 54.37 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.75 -10.09 -45.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593642580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.623 kcal (2) G-P(sol) polarization free energy of solvation -35.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds