Wall clock time and date at job start Wed Apr 1 2020 03:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 117.00474 * 2 1 4 4 O 1.20831 * 119.99366 * 359.72475 * 3 2 1 5 5 C 1.50693 * 120.00472 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46932 * 59.72316 * 5 3 2 7 7 C 1.52996 * 109.47306 * 179.72882 * 5 3 2 8 8 N 1.46502 * 109.46959 * 294.99870 * 7 5 3 9 9 S 1.65594 * 120.00169 * 165.00093 * 8 7 5 10 10 O 1.42106 * 104.27963 * 181.07281 * 9 8 7 11 11 O 1.42102 * 104.27888 * 308.92897 * 9 8 7 12 12 C 1.81405 * 104.44943 * 65.00148 * 9 8 7 13 13 C 1.53001 * 109.46994 * 173.81209 * 12 9 8 14 14 C 1.50709 * 115.54928 * 65.19680 * 13 12 9 15 15 H 1.07997 * 119.99711 * 264.77965 * 14 13 12 16 16 C 1.37877 * 120.00162 * 84.78134 * 14 13 12 17 17 N 1.31519 * 119.99725 * 352.23305 * 16 14 13 18 18 Si 1.86793 * 119.99955 * 172.23238 * 16 14 13 19 19 H 1.48499 * 109.47286 * 90.00091 * 18 16 14 20 20 H 1.48495 * 109.47251 * 210.00137 * 18 16 14 21 21 H 1.48500 * 109.47093 * 330.00068 * 18 16 14 22 22 C 1.52994 * 117.50309 * 279.52263 * 13 12 9 23 23 C 1.52995 * 117.49790 * 210.86180 * 13 12 9 24 24 C 1.53004 * 109.47212 * 299.72751 * 5 3 2 25 25 C 1.53004 * 109.46975 * 64.99924 * 24 5 3 26 26 C 1.53006 * 117.49684 * 243.62333 * 25 24 5 27 27 C 1.53000 * 60.00083 * 252.51360 * 26 25 24 28 28 H 1.09008 * 109.46463 * 60.00166 * 1 2 3 29 29 H 1.08994 * 109.47264 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47294 * 300.00591 * 1 2 3 31 31 H 1.08996 * 109.47548 * 54.99646 * 7 5 3 32 32 H 1.09002 * 109.46952 * 175.00672 * 7 5 3 33 33 H 0.97005 * 119.99925 * 345.00303 * 8 7 5 34 34 H 1.09003 * 109.46915 * 293.80893 * 12 9 8 35 35 H 1.08996 * 109.47430 * 53.81281 * 12 9 8 36 36 H 0.97001 * 119.99565 * 185.02665 * 17 16 14 37 37 H 1.09006 * 117.49633 * 0.02562 * 22 13 12 38 38 H 1.09000 * 117.50265 * 145.01807 * 22 13 12 39 39 H 1.09005 * 117.50109 * 214.98354 * 23 13 12 40 40 H 1.09004 * 117.50020 * 359.97438 * 23 13 12 41 41 H 1.09000 * 109.47291 * 184.99588 * 24 5 3 42 42 H 1.08998 * 109.46843 * 305.00131 * 24 5 3 43 43 H 1.08996 * 115.55082 * 29.32812 * 25 24 5 44 44 H 1.09005 * 117.49943 * 359.97438 * 26 25 24 45 45 H 1.08993 * 117.50162 * 145.02148 * 26 25 24 46 46 H 1.09000 * 117.49773 * 252.51485 * 27 26 25 47 47 H 1.08999 * 117.52246 * 107.48068 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0050 5 6 3.5664 1.2749 0.0006 6 1 3.9566 0.7762 -0.8867 7 6 4.0002 2.7420 -0.0064 8 7 3.5797 3.3696 -1.2616 9 16 3.5766 5.0196 -1.4020 10 8 3.0968 5.2585 -2.7181 11 8 2.8506 5.4667 -0.2652 12 6 5.3237 5.4887 -1.2665 13 6 5.4716 6.9876 -1.5357 14 6 4.8159 7.8967 -0.5283 15 1 3.8222 8.2780 -0.7114 16 6 5.4846 8.2417 0.6270 17 7 6.6265 7.6608 0.9243 18 14 4.7689 9.5343 1.7699 19 1 3.8894 8.8780 2.7704 20 1 5.8714 10.2422 2.4688 21 1 3.9768 10.5102 0.9791 22 6 5.4867 7.4451 -2.9956 23 6 6.7777 7.4652 -2.1734 24 6 4.1126 0.5875 1.2536 25 6 3.7856 -0.9062 1.1995 26 6 2.8569 -1.4656 2.2792 27 6 4.3510 -1.7938 2.3102 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.5374 3.2618 0.8325 32 1 5.0849 2.8005 0.0835 33 1 3.3031 2.8186 -2.0105 34 1 5.6838 5.2626 -0.2628 35 1 5.9079 4.9290 -1.9968 36 1 7.0605 7.8492 1.7710 37 1 5.3908 6.6782 -3.7643 38 1 5.0227 8.4037 -3.2274 39 1 7.1626 8.4372 -1.8647 40 1 7.5318 6.7117 -2.4008 41 1 5.1934 0.7213 1.2995 42 1 3.6540 1.0280 2.1388 43 1 3.7122 -1.3355 0.2003 44 1 2.4793 -0.7696 3.0283 45 1 2.1723 -2.2630 1.9904 46 1 4.6493 -2.8073 2.0416 47 1 4.9563 -1.3138 3.0790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593642580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:23 Heat of formation + Delta-G solvation = -138.453110 kcal Electronic energy + Delta-G solvation = -29477.829240 eV Core-core repulsion = 25367.608267 eV Total energy + Delta-G solvation = -4110.220973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66630 -38.61417 -38.55017 -37.95357 -37.72545 -36.75258 -36.38941 -34.07629 -33.19428 -29.83434 -28.69272 -27.49907 -27.15879 -24.74922 -23.07910 -22.97558 -21.65540 -21.56861 -21.15416 -20.16451 -18.81331 -18.45565 -18.32658 -17.68855 -17.46601 -16.96951 -16.73276 -16.64741 -16.13994 -15.91280 -15.54241 -15.17048 -14.94183 -14.81534 -14.48810 -14.04218 -13.77309 -13.69152 -13.60540 -13.57666 -13.10828 -13.02426 -12.87812 -12.86689 -12.86569 -12.65999 -12.45513 -12.42353 -12.25587 -12.19361 -11.94777 -11.87760 -11.72336 -11.55081 -11.43052 -10.97860 -10.86463 -10.64005 -10.54504 -10.46438 -9.85024 -8.19180 -6.32719 -0.48943 1.23886 1.37219 1.40408 1.48508 1.78366 2.07490 2.39971 2.97755 3.03985 3.08703 3.38091 3.40821 3.55736 3.68598 3.82343 4.01108 4.12312 4.20440 4.21406 4.33026 4.33636 4.34090 4.41428 4.50643 4.54444 4.60653 4.64464 4.66918 4.73460 4.85349 4.92394 4.95780 4.99543 5.02178 5.04046 5.18049 5.23143 5.39056 5.44247 5.48460 5.52315 5.60777 5.72551 6.14597 6.23944 6.72200 6.81571 7.38977 8.87820 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.003208 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.064235 B = 8726.229439 C = 9188.815872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.342 6.342 3 C 0.455 3.545 4 O -0.535 6.535 5 C -0.073 4.073 6 H 0.151 0.849 7 C 0.118 3.882 8 N -1.111 6.111 9 S 2.620 3.380 10 O -1.001 7.001 11 O -0.996 6.996 12 C -0.547 4.547 13 C 0.009 3.991 14 C -0.537 4.537 15 H 0.043 0.957 16 C 0.047 3.953 17 N -0.888 5.888 18 Si 0.931 3.069 19 H -0.279 1.279 20 H -0.270 1.270 21 H -0.272 1.272 22 C -0.200 4.200 23 C -0.134 4.134 24 C -0.081 4.081 25 C -0.145 4.145 26 C -0.181 4.181 27 C -0.176 4.176 28 H 0.053 0.947 29 H 0.133 0.867 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.114 0.886 33 H 0.419 0.581 34 H 0.128 0.872 35 H 0.141 0.859 36 H 0.266 0.734 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.062 0.938 43 H 0.118 0.882 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 -23.504 -0.294 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.258 6.258 3 C 0.299 3.701 4 O -0.424 6.424 5 C -0.093 4.093 6 H 0.168 0.832 7 C -0.008 4.008 8 N -0.872 5.872 9 S 2.717 3.283 10 O -0.992 6.992 11 O -0.986 6.986 12 C -0.680 4.680 13 C 0.007 3.993 14 C -0.574 4.574 15 H 0.061 0.939 16 C -0.157 4.157 17 N -0.524 5.524 18 Si 0.757 3.243 19 H -0.205 1.205 20 H -0.194 1.194 21 H -0.197 1.197 22 C -0.237 4.237 23 C -0.173 4.173 24 C -0.119 4.119 25 C -0.163 4.163 26 C -0.218 4.218 27 C -0.213 4.213 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.132 0.868 33 H 0.254 0.746 34 H 0.147 0.853 35 H 0.159 0.841 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.130 0.870 42 H 0.080 0.920 43 H 0.136 0.864 44 H 0.097 0.903 45 H 0.115 0.885 46 H 0.121 0.879 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.493 -22.538 -0.128 22.676 hybrid contribution -0.452 0.818 0.634 1.129 sum -2.946 -21.720 0.506 21.925 Atomic orbital electron populations 1.23450 0.76050 1.05305 1.01785 1.86551 1.23665 1.31984 1.83562 1.24238 0.92941 0.81310 0.71602 1.90793 1.67947 1.37758 1.45901 1.21464 0.86435 0.96580 1.04833 0.83167 1.21477 1.01418 0.92201 0.85692 1.55300 1.84294 1.25583 1.21984 1.04437 0.78502 0.72665 0.72658 1.93446 1.80494 1.84648 1.40571 1.93482 1.70624 1.80523 1.53927 1.29842 1.21690 1.05335 1.11157 1.18405 1.01017 0.88641 0.91254 1.20687 1.01408 1.30286 1.05047 0.93861 1.25443 0.94726 0.97063 0.98434 1.69998 1.16700 1.42657 1.23022 0.85966 0.78588 0.80273 0.79517 1.20525 1.19421 1.19687 1.23248 1.03159 1.02725 0.94579 1.22520 0.90424 1.01479 1.02855 1.21210 1.03277 0.93109 0.94298 1.22220 1.04689 0.93271 0.96140 1.22956 0.93533 1.03647 1.01710 1.23048 0.96064 1.00918 1.01237 0.92832 0.84865 0.92959 0.92195 0.86774 0.74613 0.85342 0.84120 0.92443 0.88211 0.90256 0.91558 0.88905 0.86983 0.91971 0.86405 0.90284 0.88484 0.87865 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.34 -6.54 8.46 -51.46 -0.44 -6.98 16 3 C 0.46 11.14 7.08 71.23 0.50 11.65 16 4 O -0.54 -18.62 15.10 21.95 0.33 -18.29 16 5 C -0.07 -1.31 2.31 -11.54 -0.03 -1.33 16 6 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 7 C 0.12 2.93 5.08 86.38 0.44 3.37 16 8 N -1.11 -33.20 5.03 -187.49 -0.94 -34.14 16 9 S 2.62 110.19 5.19 -56.49 -0.29 109.89 16 10 O -1.00 -45.85 18.08 -127.65 -2.31 -48.16 16 11 O -1.00 -52.05 17.17 -127.65 -2.19 -54.24 16 12 C -0.55 -22.11 5.93 71.98 0.43 -21.69 16 13 C 0.01 0.44 1.32 -52.93 -0.07 0.37 16 14 C -0.54 -30.31 8.18 25.60 0.21 -30.10 16 15 H 0.04 2.58 7.83 -2.91 -0.02 2.55 16 16 C 0.05 2.57 5.38 84.65 0.46 3.03 16 17 N -0.89 -48.37 12.98 21.45 0.28 -48.09 16 18 Si 0.93 44.68 29.55 68.60 2.03 46.70 16 19 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 22 C -0.20 -8.66 9.96 30.61 0.30 -8.36 16 23 C -0.13 -5.91 9.49 30.62 0.29 -5.62 16 24 C -0.08 -1.15 4.95 30.60 0.15 -0.99 16 25 C -0.15 -1.79 4.12 -10.79 -0.04 -1.83 16 26 C -0.18 -2.41 9.69 30.60 0.30 -2.12 16 27 C -0.18 -1.96 10.25 30.60 0.31 -1.65 16 28 H 0.05 0.96 8.13 -2.38 -0.02 0.94 16 29 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.89 7.51 -2.39 -0.02 1.87 16 32 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.42 10.43 8.60 -96.74 -0.83 9.59 16 34 H 0.13 5.33 8.14 -2.39 -0.02 5.31 16 35 H 0.14 4.40 8.09 -2.39 -0.02 4.38 16 36 H 0.27 13.74 8.32 -92.71 -0.77 12.97 16 37 H 0.10 3.80 8.14 -2.38 -0.02 3.78 16 38 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 39 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 40 H 0.09 3.57 8.14 -2.38 -0.02 3.55 16 41 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 1.06 7.87 -2.39 -0.02 1.04 16 43 H 0.12 1.29 8.02 -2.39 -0.02 1.27 16 44 H 0.08 1.22 8.03 -2.38 -0.02 1.20 16 45 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 46 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -79.47 405.44 1.04 -78.43 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.13 Total: 28.50 kcal Atomic # 6 Polarization: -58.07 SS G_CDS: 4.45 Total: -53.62 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -0.66 Total: -82.24 kcal Atomic # 8 Polarization: -123.06 SS G_CDS: -4.60 Total: -127.67 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 110.19 SS G_CDS: -0.29 Total: 109.89 kcal Total: -79.47 1.04 -78.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593642580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.025 kcal (2) G-P(sol) polarization free energy of solvation -79.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds