Wall clock time and date at job start Wed Apr 1 2020 03:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00210 * 2 1 4 4 O 1.20826 * 119.99996 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00119 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47478 * 300.00535 * 5 3 2 7 7 C 1.53002 * 109.47061 * 180.02562 * 5 3 2 8 8 N 1.46498 * 109.46983 * 65.00564 * 7 5 3 9 9 S 1.65598 * 119.99641 * 164.99965 * 8 7 5 10 10 O 1.42100 * 104.28002 * 308.92556 * 9 8 7 11 11 O 1.42109 * 104.27563 * 181.06966 * 9 8 7 12 12 C 1.81403 * 104.44926 * 64.99934 * 9 8 7 13 13 C 1.53004 * 109.46774 * 173.81385 * 12 9 8 14 14 C 1.50702 * 115.55204 * 65.19292 * 13 12 9 15 15 H 1.07995 * 119.99624 * 264.78019 * 14 13 12 16 16 C 1.37872 * 119.99789 * 84.78182 * 14 13 12 17 17 N 1.31518 * 120.00455 * 352.23741 * 16 14 13 18 18 Si 1.86803 * 119.99938 * 172.23124 * 16 14 13 19 19 H 1.48502 * 109.46824 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46997 * 120.00042 * 18 16 14 21 21 H 1.48501 * 109.47330 * 240.00320 * 18 16 14 22 22 C 1.53003 * 117.49858 * 279.52020 * 13 12 9 23 23 C 1.53001 * 117.49773 * 210.86325 * 13 12 9 24 24 C 1.53009 * 109.46783 * 60.00392 * 5 3 2 25 25 C 1.52998 * 109.46934 * 295.00057 * 24 5 3 26 26 C 1.53001 * 117.49558 * 243.62294 * 25 24 5 27 27 C 1.52996 * 59.99957 * 252.51232 * 26 25 24 28 28 H 1.08999 * 109.47260 * 299.99834 * 1 2 3 29 29 H 1.09003 * 109.47064 * 59.99784 * 1 2 3 30 30 H 1.09002 * 109.47108 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46759 * 305.00086 * 7 5 3 32 32 H 1.09004 * 109.46646 * 185.00616 * 7 5 3 33 33 H 0.96996 * 119.99834 * 344.99627 * 8 7 5 34 34 H 1.08997 * 109.46851 * 293.80684 * 12 9 8 35 35 H 1.08997 * 109.47092 * 53.81417 * 12 9 8 36 36 H 0.96996 * 120.00278 * 185.01948 * 17 16 14 37 37 H 1.09005 * 117.49916 * 0.02562 * 22 13 12 38 38 H 1.09001 * 117.50206 * 145.02217 * 22 13 12 39 39 H 1.08998 * 117.50141 * 214.97871 * 23 13 12 40 40 H 1.09004 * 117.49725 * 359.97372 * 23 13 12 41 41 H 1.08997 * 109.47241 * 54.99944 * 24 5 3 42 42 H 1.08996 * 109.46708 * 174.99606 * 24 5 3 43 43 H 1.09000 * 115.55351 * 29.33052 * 25 24 5 44 44 H 1.09001 * 117.49860 * 359.97438 * 26 25 24 45 45 H 1.08999 * 117.50168 * 145.02214 * 26 25 24 46 46 H 1.09008 * 117.50034 * 252.51255 * 27 26 25 47 47 H 1.09000 * 117.52288 * 107.48083 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9558 0.7808 0.8908 7 6 4.0002 2.7420 0.0011 8 7 3.5785 3.3754 1.2530 9 16 4.2203 4.8352 1.6994 10 8 5.6250 4.6469 1.5960 11 8 3.6093 5.1187 2.9507 12 6 3.6381 5.9929 0.4299 13 6 4.0405 7.4177 0.8160 14 6 5.5225 7.6898 0.8435 15 1 6.0677 7.6165 1.7728 16 6 6.1821 8.0323 -0.3178 17 7 5.5548 7.9736 -1.4723 18 14 7.9668 8.5800 -0.2515 19 1 8.4386 8.5599 1.1564 20 1 8.7983 7.6571 -1.0650 21 1 8.0822 9.9579 -0.7930 22 6 3.1697 8.1438 1.8434 23 6 3.1212 8.5567 0.3703 24 6 4.1138 0.5810 -1.2484 25 6 3.7867 -0.9124 -1.1870 26 6 4.9610 -1.8904 -1.1139 27 6 4.1488 -1.7655 -2.4044 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5382 3.2577 -0.8408 32 1 5.0850 2.8001 -0.0882 33 1 2.9234 2.9398 1.8202 34 1 4.0872 5.7359 -0.5295 35 1 2.5528 5.9304 0.3515 36 1 6.0379 8.1438 -2.2959 37 1 2.3105 7.6062 2.2446 38 1 3.6687 8.8185 2.5390 39 1 3.5883 9.5029 0.0972 40 1 2.2301 8.2909 -0.1984 41 1 3.6561 1.0170 -2.1364 42 1 5.1946 0.7147 -1.2940 43 1 2.8796 -1.1729 -0.6417 44 1 5.9666 -1.4699 -1.1099 45 1 4.8268 -2.7946 -0.5202 46 1 3.4800 -2.5875 -2.6598 47 1 4.6196 -1.2627 -3.2492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593642581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:27 Heat of formation + Delta-G solvation = -116.059141 kcal Electronic energy + Delta-G solvation = -29375.656845 eV Core-core repulsion = 25266.406947 eV Total energy + Delta-G solvation = -4109.249898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.89298 -37.95580 -37.03251 -36.70286 -36.20207 -35.39974 -34.99626 -32.25587 -32.01308 -28.09997 -28.04464 -26.31711 -25.41708 -23.87284 -22.59158 -21.16822 -20.93262 -20.52987 -19.62968 -18.59676 -17.89726 -17.21943 -16.72138 -16.67067 -16.28463 -15.91195 -15.50590 -15.04065 -14.72038 -14.48600 -14.38074 -14.11745 -13.74439 -13.50424 -13.31088 -13.09345 -12.76087 -12.63165 -12.30609 -11.92620 -11.84257 -11.77237 -11.67636 -11.50202 -11.24368 -11.15974 -11.10533 -10.99043 -10.92711 -10.91696 -10.53949 -10.52458 -10.41104 -10.34907 -10.11726 -10.07844 -9.68302 -9.16413 -8.91175 -8.54335 -8.04503 -6.11284 -4.21589 1.14166 2.04441 2.46939 3.29884 3.37584 3.45279 3.46335 3.58644 4.17694 4.39360 4.43175 4.51135 4.60335 4.71181 4.81714 4.87055 4.94148 4.97813 5.04435 5.09695 5.18499 5.25756 5.28488 5.34808 5.41954 5.46324 5.56966 5.59083 5.68375 5.76122 5.84089 5.90316 6.03082 6.07736 6.13624 6.28167 6.33088 6.43052 6.67094 6.76943 7.03135 7.25054 7.31929 7.43143 7.58255 7.83184 8.24269 8.84204 9.49252 10.96416 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013232 B = 0.003319 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.653685 B = 8433.325578 C = 9500.931090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.355 6.355 3 C 0.461 3.539 4 O -0.491 6.491 5 C -0.083 4.083 6 H 0.120 0.880 7 C 0.131 3.869 8 N -1.128 6.128 9 S 2.609 3.391 10 O -0.952 6.952 11 O -0.975 6.975 12 C -0.552 4.552 13 C 0.043 3.957 14 C -0.514 4.514 15 H 0.069 0.931 16 C 0.082 3.918 17 N -0.874 5.874 18 Si 0.892 3.108 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.283 1.283 22 C -0.208 4.208 23 C -0.141 4.141 24 C -0.083 4.083 25 C -0.163 4.163 26 C -0.181 4.181 27 C -0.181 4.181 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.408 0.592 34 H 0.133 0.867 35 H 0.101 0.899 36 H 0.262 0.738 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.127 0.873 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.377 -19.833 -2.060 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.272 6.272 3 C 0.303 3.697 4 O -0.376 6.376 5 C -0.104 4.104 6 H 0.138 0.862 7 C 0.004 3.996 8 N -0.885 5.885 9 S 2.706 3.294 10 O -0.941 6.941 11 O -0.965 6.965 12 C -0.686 4.686 13 C 0.040 3.960 14 C -0.551 4.551 15 H 0.087 0.913 16 C -0.123 4.123 17 N -0.510 5.510 18 Si 0.719 3.281 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.209 1.209 22 C -0.246 4.246 23 C -0.181 4.181 24 C -0.121 4.121 25 C -0.180 4.180 26 C -0.217 4.217 27 C -0.218 4.218 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.240 0.760 34 H 0.151 0.849 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.145 0.855 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.901 -19.238 -1.609 20.502 hybrid contribution -0.100 0.186 -0.608 0.643 sum -7.001 -19.052 -2.217 20.418 Atomic orbital electron populations 1.23276 0.76778 1.03486 1.02709 1.86515 1.23082 1.33385 1.84244 1.23775 0.91902 0.81452 0.72550 1.90728 1.66848 1.36048 1.44019 1.21439 0.87548 0.98515 1.02859 0.86244 1.21176 1.01012 0.90164 0.87284 1.55890 1.60052 1.40410 1.32114 1.05070 0.74646 0.73565 0.76087 1.93527 1.29620 1.83962 1.87032 1.93502 1.78471 1.84198 1.40351 1.29950 1.08554 1.12685 1.17364 1.18297 0.93187 0.85784 0.98687 1.20574 0.90268 1.48827 0.95479 0.91300 1.24954 0.98214 0.93904 0.95255 1.69995 1.36052 1.47593 0.97368 0.86520 0.84588 0.78227 0.78762 1.19227 1.20652 1.20886 1.23196 1.02557 1.05901 0.92930 1.22548 1.00259 1.00747 0.94502 1.21168 1.02278 0.92948 0.95723 1.22683 1.00639 0.91810 1.02894 1.23052 0.96322 1.01501 1.00873 1.22937 1.03883 1.02777 0.92192 0.91831 0.91869 0.88312 0.90760 0.88423 0.75958 0.84923 0.88068 0.92823 0.90681 0.89553 0.89617 0.91534 0.90422 0.89268 0.85494 0.88645 0.88971 0.89009 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.36 7.65 -39.24 -0.30 -3.66 16 3 C 0.46 5.28 6.82 36.01 0.25 5.53 16 4 O -0.49 -7.09 14.79 -18.75 -0.28 -7.36 16 5 C -0.08 -0.85 2.44 -91.76 -0.22 -1.07 16 6 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 7 C 0.13 1.73 5.08 -4.04 -0.02 1.71 16 8 N -1.13 -17.70 5.37 -10.61 -0.06 -17.76 16 9 S 2.61 53.99 5.19 -107.50 -0.56 53.43 16 10 O -0.95 -22.49 17.16 -57.54 -0.99 -23.48 16 11 O -0.97 -22.15 18.08 -57.54 -1.04 -23.19 16 12 C -0.55 -12.00 5.93 37.16 0.22 -11.78 16 13 C 0.04 1.07 1.32 -155.65 -0.21 0.86 16 14 C -0.51 -14.20 8.18 -34.44 -0.28 -14.48 16 15 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 16 C 0.08 2.23 5.38 -17.82 -0.10 2.13 16 17 N -0.87 -24.10 12.98 55.43 0.72 -23.38 16 18 Si 0.89 21.42 29.55 -169.99 -5.02 16.40 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.21 -4.73 9.96 -26.69 -0.27 -4.99 16 23 C -0.14 -3.31 9.49 -26.69 -0.25 -3.56 16 24 C -0.08 -0.71 4.96 -26.73 -0.13 -0.84 16 25 C -0.16 -1.28 5.44 -90.62 -0.49 -1.77 16 26 C -0.18 -1.30 10.18 -26.73 -0.27 -1.57 16 27 C -0.18 -1.30 10.25 -26.73 -0.27 -1.57 16 28 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.98 7.96 -51.93 -0.41 0.56 16 32 H 0.10 1.27 7.69 -51.93 -0.40 0.87 16 33 H 0.41 5.83 7.77 -34.47 -0.27 5.56 16 34 H 0.13 2.94 8.14 -51.93 -0.42 2.52 16 35 H 0.10 1.95 8.09 -51.93 -0.42 1.53 16 36 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 37 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 39 H 0.09 2.10 8.14 -51.93 -0.42 1.67 16 40 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.69 7.87 -51.93 -0.41 0.28 16 43 H 0.13 1.05 5.24 -51.93 -0.27 0.78 16 44 H 0.10 0.67 8.03 -51.93 -0.42 0.25 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 402.72 15.07 6.07 6.07 Total: -1.00 -34.16 402.72 -10.08 -44.24 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.64 Total: 8.80 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: -0.99 Total: -30.11 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.66 Total: -41.14 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -2.61 Total: -57.70 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 53.99 SS G_CDS: -0.56 Total: 53.43 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.16 -10.08 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593642581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.818 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds