Wall clock time and date at job start Wed Apr 1 2020 03:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00210 * 2 1 4 4 O 1.20826 * 119.99996 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00119 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47478 * 300.00535 * 5 3 2 7 7 C 1.53002 * 109.47061 * 180.02562 * 5 3 2 8 8 N 1.46498 * 109.46983 * 65.00564 * 7 5 3 9 9 S 1.65598 * 119.99641 * 164.99965 * 8 7 5 10 10 O 1.42100 * 104.28002 * 308.92556 * 9 8 7 11 11 O 1.42109 * 104.27563 * 181.06966 * 9 8 7 12 12 C 1.81403 * 104.44926 * 64.99934 * 9 8 7 13 13 C 1.53004 * 109.46774 * 173.81385 * 12 9 8 14 14 C 1.50702 * 115.55204 * 65.19292 * 13 12 9 15 15 H 1.07995 * 119.99624 * 264.78019 * 14 13 12 16 16 C 1.37872 * 119.99789 * 84.78182 * 14 13 12 17 17 N 1.31518 * 120.00455 * 352.23741 * 16 14 13 18 18 Si 1.86803 * 119.99938 * 172.23124 * 16 14 13 19 19 H 1.48502 * 109.46824 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46997 * 120.00042 * 18 16 14 21 21 H 1.48501 * 109.47330 * 240.00320 * 18 16 14 22 22 C 1.53003 * 117.49858 * 279.52020 * 13 12 9 23 23 C 1.53001 * 117.49773 * 210.86325 * 13 12 9 24 24 C 1.53009 * 109.46783 * 60.00392 * 5 3 2 25 25 C 1.52998 * 109.46934 * 295.00057 * 24 5 3 26 26 C 1.53001 * 117.49558 * 243.62294 * 25 24 5 27 27 C 1.52996 * 59.99957 * 252.51232 * 26 25 24 28 28 H 1.08999 * 109.47260 * 299.99834 * 1 2 3 29 29 H 1.09003 * 109.47064 * 59.99784 * 1 2 3 30 30 H 1.09002 * 109.47108 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46759 * 305.00086 * 7 5 3 32 32 H 1.09004 * 109.46646 * 185.00616 * 7 5 3 33 33 H 0.96996 * 119.99834 * 344.99627 * 8 7 5 34 34 H 1.08997 * 109.46851 * 293.80684 * 12 9 8 35 35 H 1.08997 * 109.47092 * 53.81417 * 12 9 8 36 36 H 0.96996 * 120.00278 * 185.01948 * 17 16 14 37 37 H 1.09005 * 117.49916 * 0.02562 * 22 13 12 38 38 H 1.09001 * 117.50206 * 145.02217 * 22 13 12 39 39 H 1.08998 * 117.50141 * 214.97871 * 23 13 12 40 40 H 1.09004 * 117.49725 * 359.97372 * 23 13 12 41 41 H 1.08997 * 109.47241 * 54.99944 * 24 5 3 42 42 H 1.08996 * 109.46708 * 174.99606 * 24 5 3 43 43 H 1.09000 * 115.55351 * 29.33052 * 25 24 5 44 44 H 1.09001 * 117.49860 * 359.97438 * 26 25 24 45 45 H 1.08999 * 117.50168 * 145.02214 * 26 25 24 46 46 H 1.09008 * 117.50034 * 252.51255 * 27 26 25 47 47 H 1.09000 * 117.52288 * 107.48083 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9558 0.7808 0.8908 7 6 4.0002 2.7420 0.0011 8 7 3.5785 3.3754 1.2530 9 16 4.2203 4.8352 1.6994 10 8 5.6250 4.6469 1.5960 11 8 3.6093 5.1187 2.9507 12 6 3.6381 5.9929 0.4299 13 6 4.0405 7.4177 0.8160 14 6 5.5225 7.6898 0.8435 15 1 6.0677 7.6165 1.7728 16 6 6.1821 8.0323 -0.3178 17 7 5.5548 7.9736 -1.4723 18 14 7.9668 8.5800 -0.2515 19 1 8.4386 8.5599 1.1564 20 1 8.7983 7.6571 -1.0650 21 1 8.0822 9.9579 -0.7930 22 6 3.1697 8.1438 1.8434 23 6 3.1212 8.5567 0.3703 24 6 4.1138 0.5810 -1.2484 25 6 3.7867 -0.9124 -1.1870 26 6 4.9610 -1.8904 -1.1139 27 6 4.1488 -1.7655 -2.4044 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5382 3.2577 -0.8408 32 1 5.0850 2.8001 -0.0882 33 1 2.9234 2.9398 1.8202 34 1 4.0872 5.7359 -0.5295 35 1 2.5528 5.9304 0.3515 36 1 6.0379 8.1438 -2.2959 37 1 2.3105 7.6062 2.2446 38 1 3.6687 8.8185 2.5390 39 1 3.5883 9.5029 0.0972 40 1 2.2301 8.2909 -0.1984 41 1 3.6561 1.0170 -2.1364 42 1 5.1946 0.7147 -1.2940 43 1 2.8796 -1.1729 -0.6417 44 1 5.9666 -1.4699 -1.1099 45 1 4.8268 -2.7946 -0.5202 46 1 3.4800 -2.5875 -2.6598 47 1 4.6196 -1.2627 -3.2492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593642581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:26 Heat of formation + Delta-G solvation = -137.761324 kcal Electronic energy + Delta-G solvation = -29376.597922 eV Core-core repulsion = 25266.406947 eV Total energy + Delta-G solvation = -4110.190975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.75485 -38.63555 -38.56551 -37.99598 -37.81970 -36.81787 -36.37988 -34.07729 -33.24045 -29.85631 -28.70008 -27.50367 -27.19067 -24.77568 -23.12396 -23.00939 -21.69067 -21.57971 -21.19649 -20.19401 -18.79117 -18.46152 -18.33672 -17.82718 -17.52871 -17.04655 -16.75368 -16.66983 -16.25547 -15.90281 -15.48290 -15.23908 -14.93942 -14.88675 -14.33965 -14.21599 -13.80615 -13.70193 -13.64626 -13.50816 -13.14162 -13.07927 -12.90945 -12.89367 -12.83972 -12.65794 -12.54173 -12.42425 -12.24035 -12.22847 -11.97133 -11.92431 -11.71745 -11.55413 -11.40682 -10.97492 -10.87136 -10.71436 -10.56013 -10.50522 -9.87483 -8.17830 -6.33174 -0.50734 1.16425 1.38981 1.42018 1.53636 1.70692 2.00785 2.41202 2.91409 3.00532 3.08715 3.31846 3.36944 3.48738 3.69213 3.76824 3.98238 4.09572 4.15558 4.20889 4.29914 4.31397 4.37346 4.41266 4.47433 4.53092 4.58584 4.60558 4.72315 4.76716 4.83478 4.89402 4.90636 4.95673 4.96080 5.07250 5.16192 5.19534 5.35601 5.37969 5.45569 5.56911 5.60901 5.72903 6.06053 6.23221 6.73015 6.73355 7.39243 8.89558 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013232 B = 0.003319 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.653685 B = 8433.325578 C = 9500.931090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.349 6.349 3 C 0.464 3.536 4 O -0.526 6.526 5 C -0.076 4.076 6 H 0.136 0.864 7 C 0.119 3.881 8 N -1.113 6.113 9 S 2.629 3.371 10 O -0.985 6.985 11 O -0.997 6.997 12 C -0.553 4.553 13 C 0.012 3.988 14 C -0.534 4.534 15 H 0.050 0.950 16 C 0.043 3.957 17 N -0.892 5.892 18 Si 0.939 3.061 19 H -0.273 1.273 20 H -0.274 1.274 21 H -0.273 1.273 22 C -0.198 4.198 23 C -0.139 4.139 24 C -0.080 4.080 25 C -0.168 4.168 26 C -0.179 4.179 27 C -0.180 4.180 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.131 0.869 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.417 0.583 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.266 0.734 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.125 0.875 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.772 -21.540 -2.444 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.266 6.266 3 C 0.308 3.692 4 O -0.414 6.414 5 C -0.096 4.096 6 H 0.154 0.846 7 C -0.007 4.007 8 N -0.873 5.873 9 S 2.726 3.274 10 O -0.975 6.975 11 O -0.987 6.987 12 C -0.685 4.685 13 C 0.010 3.990 14 C -0.571 4.571 15 H 0.068 0.932 16 C -0.160 4.160 17 N -0.528 5.528 18 Si 0.764 3.236 19 H -0.197 1.197 20 H -0.199 1.199 21 H -0.198 1.198 22 C -0.235 4.235 23 C -0.178 4.178 24 C -0.118 4.118 25 C -0.185 4.185 26 C -0.216 4.216 27 C -0.217 4.217 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.252 0.748 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.143 0.857 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.304 -20.955 -1.994 22.281 hybrid contribution -0.046 0.640 -0.497 0.812 sum -7.350 -20.315 -2.490 21.747 Atomic orbital electron populations 1.23534 0.75487 1.05518 1.02332 1.86519 1.24301 1.32141 1.83598 1.23959 0.92249 0.81474 0.71564 1.90715 1.67626 1.37205 1.45876 1.21398 0.87097 0.96546 1.04563 0.84619 1.21429 1.01275 0.92093 0.85899 1.55410 1.59982 1.38662 1.33203 1.04191 0.73851 0.74067 0.75298 1.93482 1.31904 1.84724 1.87348 1.93460 1.78636 1.85060 1.41593 1.29875 1.10012 1.11384 1.17245 1.18436 0.92319 0.87610 1.00615 1.20722 0.92021 1.49463 0.94935 0.93169 1.25536 1.01403 0.93973 0.95075 1.70042 1.37181 1.47978 0.97645 0.85800 0.80957 0.78390 0.78475 1.19716 1.19891 1.19843 1.23241 1.02513 1.05249 0.92517 1.22500 1.00424 0.99575 0.95333 1.21173 1.02715 0.93311 0.94622 1.22604 1.00941 0.91316 1.03683 1.23122 0.96147 1.01478 1.00885 1.23007 1.03886 1.02707 0.92110 0.92260 0.92256 0.85107 0.90787 0.88223 0.74824 0.85733 0.85755 0.92493 0.88708 0.89691 0.91329 0.89770 0.90554 0.88377 0.85712 0.88492 0.88275 0.88276 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.96 7.65 -51.36 -0.39 -6.35 16 3 C 0.46 9.98 6.82 71.24 0.49 10.47 16 4 O -0.53 -14.70 14.79 21.96 0.32 -14.38 16 5 C -0.08 -1.43 2.44 -11.54 -0.03 -1.45 16 6 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 7 C 0.12 3.04 5.08 86.38 0.44 3.48 16 8 N -1.11 -33.94 5.37 -187.48 -1.01 -34.95 16 9 S 2.63 108.19 5.19 -56.49 -0.29 107.90 16 10 O -0.98 -46.88 17.16 -127.65 -2.19 -49.08 16 11 O -1.00 -44.88 18.08 -127.65 -2.31 -47.19 16 12 C -0.55 -23.81 5.93 71.98 0.43 -23.38 16 13 C 0.01 0.61 1.32 -52.92 -0.07 0.54 16 14 C -0.53 -29.85 8.18 25.60 0.21 -29.64 16 15 H 0.05 2.91 7.83 -2.91 -0.02 2.89 16 16 C 0.04 2.36 5.38 84.65 0.46 2.82 16 17 N -0.89 -49.21 12.98 21.45 0.28 -48.93 16 18 Si 0.94 43.89 29.55 68.60 2.03 45.92 16 19 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 C -0.20 -8.84 9.96 30.62 0.30 -8.54 16 23 C -0.14 -6.46 9.49 30.62 0.29 -6.17 16 24 C -0.08 -1.22 4.96 30.60 0.15 -1.07 16 25 C -0.17 -2.29 5.44 -10.79 -0.06 -2.35 16 26 C -0.18 -2.20 10.18 30.59 0.31 -1.88 16 27 C -0.18 -2.21 10.25 30.59 0.31 -1.90 16 28 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 29 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.90 7.96 -2.39 -0.02 1.89 16 32 H 0.10 2.52 7.69 -2.39 -0.02 2.50 16 33 H 0.42 11.43 7.77 -96.75 -0.75 10.68 16 34 H 0.12 5.54 8.14 -2.39 -0.02 5.53 16 35 H 0.12 4.65 8.09 -2.39 -0.02 4.63 16 36 H 0.27 13.84 8.32 -92.71 -0.77 13.07 16 37 H 0.09 3.82 8.14 -2.38 -0.02 3.80 16 38 H 0.08 3.76 8.14 -2.39 -0.02 3.74 16 39 H 0.07 3.37 8.14 -2.39 -0.02 3.36 16 40 H 0.08 3.54 8.14 -2.38 -0.02 3.52 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.10 1.33 7.87 -2.39 -0.02 1.31 16 43 H 0.13 1.78 5.24 -2.39 -0.01 1.77 16 44 H 0.10 1.16 8.03 -2.39 -0.02 1.14 16 45 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -72.29 402.72 1.08 -71.21 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.22 Total: 33.42 kcal Atomic # 6 Polarization: -62.00 SS G_CDS: 4.43 Total: -57.57 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -0.73 Total: -83.88 kcal Atomic # 8 Polarization: -112.43 SS G_CDS: -4.57 Total: -117.00 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 108.19 SS G_CDS: -0.29 Total: 107.90 kcal Total: -72.29 1.08 -71.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593642581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.550 kcal (2) G-P(sol) polarization free energy of solvation -72.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds