Wall clock time and date at job start Wed Apr 1 2020 03:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 117.00122 * 2 1 4 4 O 1.20830 * 119.99706 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00110 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.64022 * 56.86174 * 5 3 2 7 7 C 1.54316 * 110.72143 * 293.51956 * 5 3 2 8 8 N 1.47020 * 107.27568 * 219.44366 * 7 5 3 9 9 S 1.65599 * 125.65098 * 178.97810 * 8 7 5 10 10 O 1.42094 * 104.27876 * 26.03012 * 9 8 7 11 11 O 1.42101 * 104.27996 * 153.88809 * 9 8 7 12 12 C 1.81405 * 104.45037 * 269.95805 * 9 8 7 13 13 C 1.52997 * 109.47184 * 179.97438 * 12 9 8 14 14 C 1.53002 * 109.46969 * 179.97438 * 13 12 9 15 15 C 1.50701 * 109.47127 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00090 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00458 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99929 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47238 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47396 * 119.99448 * 19 17 15 22 22 H 1.48502 * 109.47265 * 239.99744 * 19 17 15 23 23 C 1.47422 * 108.70191 * 358.94070 * 8 7 5 24 24 C 1.54917 * 104.83074 * 24.12901 * 23 8 7 25 25 H 1.08996 * 111.00506 * 81.10418 * 24 23 8 26 26 C 1.52994 * 111.00301 * 204.91369 * 24 23 8 27 27 C 1.53008 * 117.50202 * 247.29143 * 26 24 23 28 28 C 1.53005 * 117.49919 * 178.62932 * 26 24 23 29 29 H 1.09001 * 109.46988 * 60.00085 * 1 2 3 30 30 H 1.08996 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47448 * 300.00418 * 1 2 3 32 32 H 1.09000 * 109.88340 * 338.86712 * 7 5 3 33 33 H 1.09003 * 109.88233 * 100.02676 * 7 5 3 34 34 H 1.09006 * 109.46921 * 300.00357 * 12 9 8 35 35 H 1.09001 * 109.46815 * 59.99735 * 12 9 8 36 36 H 1.08995 * 109.47181 * 300.00103 * 13 12 9 37 37 H 1.09000 * 109.46636 * 60.00595 * 13 12 9 38 38 H 1.08997 * 109.47359 * 300.00632 * 14 13 12 39 39 H 1.09001 * 109.46862 * 60.00041 * 14 13 12 40 40 H 0.96998 * 120.00569 * 179.97438 * 18 17 15 41 41 H 1.08998 * 110.36873 * 265.28987 * 23 8 7 42 42 H 1.09005 * 110.36491 * 142.96394 * 23 8 7 43 43 H 1.09005 * 115.55630 * 32.96610 * 26 24 23 44 44 H 1.08996 * 117.49350 * 0.02562 * 27 26 24 45 45 H 1.08993 * 117.49998 * 145.02229 * 27 26 24 46 46 H 1.08997 * 117.50191 * 214.97973 * 28 26 24 47 47 H 1.08993 * 117.49577 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9795 0.7380 -0.8533 7 6 4.1412 0.7285 1.3244 8 7 5.2656 1.5966 1.7033 9 16 6.1937 1.4346 3.0652 10 8 6.1027 0.0541 3.3892 11 8 7.4379 2.0241 2.7136 12 6 5.3438 2.4390 4.3141 13 6 6.1135 2.3693 5.6346 14 6 5.3970 3.2170 6.6878 15 6 6.1554 3.1489 7.9882 16 1 7.0584 2.5604 8.0566 17 6 5.6966 3.8380 9.0907 18 7 4.5973 4.5551 9.0074 19 14 6.6370 3.7543 10.7025 20 1 7.8310 2.8873 10.5345 21 1 7.0679 5.1199 11.0958 22 1 5.7598 3.1885 11.7587 23 6 5.4307 2.6345 0.6695 24 6 4.0385 2.7528 0.0004 25 1 3.3712 3.3769 0.5948 26 6 4.1600 3.2897 -1.4271 27 6 3.5881 4.6804 -1.7100 28 6 2.8714 3.4354 -2.2391 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.3754 0.7541 2.0996 33 1 4.4933 -0.2932 1.1819 34 1 5.2945 3.4741 3.9759 35 1 4.3339 2.0566 4.4620 36 1 6.1624 1.3343 5.9725 37 1 7.1235 2.7515 5.4869 38 1 5.3484 4.2520 6.3496 39 1 4.3868 2.8353 6.8355 40 1 4.2743 5.0396 9.7831 41 1 6.1780 2.3263 -0.0617 42 1 5.7140 3.5830 1.1261 43 1 5.0627 2.9980 -1.9639 44 1 3.1257 5.2129 -0.8790 45 1 4.1143 5.3034 -2.4331 46 1 2.9265 3.2401 -3.3100 47 1 1.9372 3.1484 -1.7564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593669571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:53 Heat of formation + Delta-G solvation = -139.723962 kcal Electronic energy + Delta-G solvation = -28850.961116 eV Core-core repulsion = 24740.685034 eV Total energy + Delta-G solvation = -4110.276081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20553 -39.11843 -36.97771 -36.83776 -36.60820 -35.80408 -34.68424 -32.19687 -31.61134 -29.85314 -27.90630 -27.80973 -24.10354 -23.75254 -23.30544 -22.58461 -21.28304 -20.56563 -20.14486 -18.90643 -18.07917 -17.68734 -17.19097 -16.74359 -16.54557 -16.16388 -15.87364 -15.59220 -15.26583 -14.49435 -14.36791 -14.22684 -13.97986 -13.76354 -13.68655 -13.33522 -12.96572 -12.61832 -12.49763 -12.30016 -12.18402 -12.02671 -11.92747 -11.84577 -11.80690 -11.78303 -11.59448 -11.27283 -11.24062 -11.07391 -10.94305 -10.85627 -10.77010 -10.48828 -10.42039 -10.23632 -9.97069 -9.55935 -9.24532 -8.98106 -8.41922 -6.06391 -4.09574 0.32954 1.79552 2.27826 2.67685 3.28966 3.35784 3.36510 3.41389 3.85408 3.93782 4.07349 4.27662 4.35064 4.41936 4.50970 4.65360 4.72457 4.77340 4.84542 4.87576 4.97182 5.01040 5.10065 5.11218 5.17012 5.19607 5.25905 5.30118 5.42489 5.44203 5.48740 5.63924 5.73624 5.81287 5.89208 5.90377 5.95629 6.07616 6.11732 6.27336 6.42841 6.85471 7.36783 7.56233 7.65632 7.91586 8.31790 8.96924 9.55304 11.04846 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013242 B = 0.002550 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.947804 B =10977.231680 C =11302.243995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.473 3.527 4 O -0.495 6.495 5 C -0.088 4.088 6 H 0.125 0.875 7 C 0.135 3.865 8 N -1.018 6.018 9 S 2.613 3.387 10 O -0.954 6.954 11 O -0.953 6.953 12 C -0.608 4.608 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.129 3.871 24 C -0.055 4.055 25 H 0.104 0.896 26 C -0.150 4.150 27 C -0.170 4.170 28 C -0.186 4.186 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.673 -6.240 -25.497 27.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.315 3.685 4 O -0.382 6.382 5 C -0.108 4.108 6 H 0.143 0.857 7 C 0.009 3.991 8 N -0.854 5.854 9 S 2.711 3.289 10 O -0.945 6.945 11 O -0.943 6.943 12 C -0.740 4.740 13 C -0.145 4.145 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C 0.004 3.996 24 C -0.075 4.075 25 H 0.122 0.878 26 C -0.168 4.168 27 C -0.207 4.207 28 C -0.223 4.223 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.129 0.871 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.161 -6.392 -25.283 26.796 hybrid contribution -0.481 0.542 1.052 1.277 sum -6.642 -5.850 -24.231 25.797 Atomic orbital electron populations 1.23316 0.75973 1.03937 1.02702 1.86527 1.23690 1.33149 1.83839 1.23339 0.91407 0.81522 0.72211 1.90641 1.66866 1.36199 1.44525 1.22168 0.87700 0.99772 1.01187 0.85678 1.21496 0.88465 0.94784 0.94351 1.58879 1.47933 1.40676 1.37916 1.05139 0.74365 0.75617 0.73753 1.93567 1.86572 1.30742 1.83623 1.93575 1.39271 1.79759 1.81736 1.30595 1.13656 1.15279 1.14496 1.21512 0.98788 1.02776 0.91452 1.19067 0.95596 0.94459 0.91655 1.21288 1.10079 1.29667 0.95360 0.92292 1.25023 0.95078 0.95185 0.99120 1.69965 1.21949 1.31156 1.30337 0.86500 0.80011 0.77870 0.83439 1.19585 1.20928 1.20943 1.22028 0.96186 0.91196 0.90183 1.22010 0.96897 0.93078 0.95499 0.87820 1.22145 0.98357 1.01088 0.95254 1.22975 1.03658 0.90431 1.03618 1.23218 0.97003 1.02673 0.99414 0.91851 0.87923 0.91607 0.91032 0.89196 0.85364 0.85481 0.91538 0.91521 0.96098 0.96132 0.92940 0.90450 0.89595 0.87149 0.88475 0.88782 0.89168 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.08 10.57 -39.27 -0.41 -3.50 16 3 C 0.47 4.46 6.71 36.00 0.24 4.70 16 4 O -0.50 -5.64 12.94 -18.75 -0.24 -5.88 16 5 C -0.09 -0.72 2.84 -89.94 -0.26 -0.97 16 6 H 0.13 0.77 8.04 -51.93 -0.42 0.35 16 7 C 0.13 1.30 6.48 -3.07 -0.02 1.28 16 8 N -1.02 -11.39 3.62 -111.42 -0.40 -11.79 16 9 S 2.61 38.45 5.65 -107.50 -0.61 37.84 16 10 O -0.95 -16.48 17.60 -57.54 -1.01 -17.50 16 11 O -0.95 -16.41 17.61 -57.54 -1.01 -17.42 16 12 C -0.61 -9.44 6.18 37.16 0.23 -9.21 16 13 C -0.11 -2.15 5.16 -26.73 -0.14 -2.28 16 14 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 C 0.13 1.20 6.36 -2.53 -0.02 1.18 16 24 C -0.05 -0.46 2.33 -88.47 -0.21 -0.67 16 25 H 0.10 1.00 7.27 -51.93 -0.38 0.63 16 26 C -0.15 -1.09 5.17 -90.62 -0.47 -1.56 16 27 C -0.17 -1.28 10.20 -26.68 -0.27 -1.55 16 28 C -0.19 -1.44 9.83 -26.69 -0.26 -1.70 16 29 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 32 H 0.07 0.67 7.81 -51.93 -0.41 0.26 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 35 H 0.13 1.79 8.14 -51.92 -0.42 1.37 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 41 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.11 0.67 7.99 -51.93 -0.41 0.26 16 44 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.11 1.03 5.30 -51.93 -0.28 0.75 16 LS Contribution 397.78 15.07 5.99 5.99 Total: -1.00 -35.60 397.78 -10.39 -46.00 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.76 Total: -1.95 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -0.65 Total: -22.48 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.33 Total: -37.71 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -2.68 Total: -44.30 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 38.45 SS G_CDS: -0.61 Total: 37.84 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.60 -10.39 -46.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593669571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.728 kcal (2) G-P(sol) polarization free energy of solvation -35.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds