Wall clock time and date at job start Wed Apr 1 2020 03:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 117.00122 * 2 1 4 4 O 1.20830 * 119.99706 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00110 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.64022 * 56.86174 * 5 3 2 7 7 C 1.54316 * 110.72143 * 293.51956 * 5 3 2 8 8 N 1.47020 * 107.27568 * 219.44366 * 7 5 3 9 9 S 1.65599 * 125.65098 * 178.97810 * 8 7 5 10 10 O 1.42094 * 104.27876 * 26.03012 * 9 8 7 11 11 O 1.42101 * 104.27996 * 153.88809 * 9 8 7 12 12 C 1.81405 * 104.45037 * 269.95805 * 9 8 7 13 13 C 1.52997 * 109.47184 * 179.97438 * 12 9 8 14 14 C 1.53002 * 109.46969 * 179.97438 * 13 12 9 15 15 C 1.50701 * 109.47127 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00090 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00458 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99929 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47238 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47396 * 119.99448 * 19 17 15 22 22 H 1.48502 * 109.47265 * 239.99744 * 19 17 15 23 23 C 1.47422 * 108.70191 * 358.94070 * 8 7 5 24 24 C 1.54917 * 104.83074 * 24.12901 * 23 8 7 25 25 H 1.08996 * 111.00506 * 81.10418 * 24 23 8 26 26 C 1.52994 * 111.00301 * 204.91369 * 24 23 8 27 27 C 1.53008 * 117.50202 * 247.29143 * 26 24 23 28 28 C 1.53005 * 117.49919 * 178.62932 * 26 24 23 29 29 H 1.09001 * 109.46988 * 60.00085 * 1 2 3 30 30 H 1.08996 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47448 * 300.00418 * 1 2 3 32 32 H 1.09000 * 109.88340 * 338.86712 * 7 5 3 33 33 H 1.09003 * 109.88233 * 100.02676 * 7 5 3 34 34 H 1.09006 * 109.46921 * 300.00357 * 12 9 8 35 35 H 1.09001 * 109.46815 * 59.99735 * 12 9 8 36 36 H 1.08995 * 109.47181 * 300.00103 * 13 12 9 37 37 H 1.09000 * 109.46636 * 60.00595 * 13 12 9 38 38 H 1.08997 * 109.47359 * 300.00632 * 14 13 12 39 39 H 1.09001 * 109.46862 * 60.00041 * 14 13 12 40 40 H 0.96998 * 120.00569 * 179.97438 * 18 17 15 41 41 H 1.08998 * 110.36873 * 265.28987 * 23 8 7 42 42 H 1.09005 * 110.36491 * 142.96394 * 23 8 7 43 43 H 1.09005 * 115.55630 * 32.96610 * 26 24 23 44 44 H 1.08996 * 117.49350 * 0.02562 * 27 26 24 45 45 H 1.08993 * 117.49998 * 145.02229 * 27 26 24 46 46 H 1.08997 * 117.50191 * 214.97973 * 28 26 24 47 47 H 1.08993 * 117.49577 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9795 0.7380 -0.8533 7 6 4.1412 0.7285 1.3244 8 7 5.2656 1.5966 1.7033 9 16 6.1937 1.4346 3.0652 10 8 6.1027 0.0541 3.3892 11 8 7.4379 2.0241 2.7136 12 6 5.3438 2.4390 4.3141 13 6 6.1135 2.3693 5.6346 14 6 5.3970 3.2170 6.6878 15 6 6.1554 3.1489 7.9882 16 1 7.0584 2.5604 8.0566 17 6 5.6966 3.8380 9.0907 18 7 4.5973 4.5551 9.0074 19 14 6.6370 3.7543 10.7025 20 1 7.8310 2.8873 10.5345 21 1 7.0679 5.1199 11.0958 22 1 5.7598 3.1885 11.7587 23 6 5.4307 2.6345 0.6695 24 6 4.0385 2.7528 0.0004 25 1 3.3712 3.3769 0.5948 26 6 4.1600 3.2897 -1.4271 27 6 3.5881 4.6804 -1.7100 28 6 2.8714 3.4354 -2.2391 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.3754 0.7541 2.0996 33 1 4.4933 -0.2932 1.1819 34 1 5.2945 3.4741 3.9759 35 1 4.3339 2.0566 4.4620 36 1 6.1624 1.3343 5.9725 37 1 7.1235 2.7515 5.4869 38 1 5.3484 4.2520 6.3496 39 1 4.3868 2.8353 6.8355 40 1 4.2743 5.0396 9.7831 41 1 6.1780 2.3263 -0.0617 42 1 5.7140 3.5830 1.1261 43 1 5.0627 2.9980 -1.9639 44 1 3.1257 5.2129 -0.8790 45 1 4.1143 5.3034 -2.4331 46 1 2.9265 3.2401 -3.3100 47 1 1.9372 3.1484 -1.7564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593669571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:53 Heat of formation + Delta-G solvation = -162.722356 kcal Electronic energy + Delta-G solvation = -28851.958401 eV Core-core repulsion = 24740.685034 eV Total energy + Delta-G solvation = -4111.273367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.91578 -39.81758 -38.26234 -37.57373 -37.27559 -37.09837 -36.49195 -34.18594 -32.39589 -30.56779 -29.68472 -28.46188 -25.69777 -24.72348 -24.16869 -23.18677 -22.32655 -21.91967 -20.80747 -19.99640 -18.93524 -18.68693 -18.48227 -17.91625 -17.47659 -17.22709 -17.14926 -16.53206 -16.34321 -16.17056 -15.72652 -14.95051 -14.69451 -14.57375 -14.51677 -14.42579 -14.08161 -14.04116 -13.77460 -13.55970 -13.28859 -13.21550 -13.06573 -13.02394 -12.81796 -12.78997 -12.76581 -12.63014 -12.45878 -12.24473 -12.17602 -11.87346 -11.78157 -11.72240 -11.52425 -11.39252 -11.14907 -11.05260 -10.83334 -10.60009 -10.03747 -8.24300 -6.35685 -0.87221 1.06979 1.38944 1.39453 1.52705 1.53310 1.74771 2.38642 2.71080 2.74281 3.00875 3.09315 3.30169 3.46374 3.64181 3.71943 3.83249 3.90312 4.04917 4.12774 4.24174 4.29468 4.31499 4.34055 4.35359 4.38627 4.47879 4.55835 4.61074 4.72265 4.73920 4.79951 4.87374 4.89102 4.95886 5.05041 5.09143 5.12281 5.24607 5.30478 5.36540 5.43303 5.48728 5.59701 5.77342 6.17349 6.67425 6.80282 7.33991 8.87487 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013242 B = 0.002550 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.947804 B =10977.231680 C =11302.243995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.473 3.527 4 O -0.519 6.519 5 C -0.081 4.081 6 H 0.152 0.848 7 C 0.126 3.874 8 N -1.013 6.013 9 S 2.646 3.354 10 O -0.979 6.979 11 O -0.976 6.976 12 C -0.613 4.613 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.551 4.551 16 H 0.062 0.938 17 C 0.001 3.999 18 N -0.931 5.931 19 Si 0.964 3.036 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.277 1.277 23 C 0.121 3.879 24 C -0.051 4.051 25 H 0.087 0.913 26 C -0.142 4.142 27 C -0.175 4.175 28 C -0.188 4.188 29 H 0.066 0.934 30 H 0.129 0.871 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.002 0.998 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.131 0.869 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 -7.078 -26.789 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.317 3.683 4 O -0.408 6.408 5 C -0.101 4.101 6 H 0.169 0.831 7 C 0.001 3.999 8 N -0.851 5.851 9 S 2.743 3.257 10 O -0.969 6.969 11 O -0.966 6.966 12 C -0.744 4.744 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.589 4.589 16 H 0.080 0.920 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.789 3.211 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.003 4.003 24 C -0.071 4.071 25 H 0.105 0.895 26 C -0.161 4.161 27 C -0.212 4.212 28 C -0.225 4.225 29 H 0.085 0.915 30 H 0.147 0.853 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.149 0.851 44 H 0.103 0.897 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.455 -7.237 -26.563 28.067 hybrid contribution -0.808 0.805 1.383 1.793 sum -6.263 -6.432 -25.180 26.733 Atomic orbital electron populations 1.23545 0.74810 1.05666 1.02513 1.86520 1.24906 1.32687 1.83497 1.23564 0.91872 0.81377 0.71525 1.90641 1.67492 1.36999 1.45688 1.22199 0.86890 0.99713 1.01290 0.83055 1.21701 0.87962 0.95067 0.95184 1.58515 1.48136 1.41573 1.36895 1.03919 0.73757 0.74394 0.73624 1.93531 1.86956 1.32043 1.84378 1.93541 1.40842 1.80035 1.82183 1.30595 1.13923 1.17017 1.12843 1.21316 0.98954 1.01713 0.92508 1.18962 0.94943 0.94219 0.92624 1.21766 1.10514 1.29772 0.96851 0.92004 1.25959 0.96003 0.94693 1.03013 1.70081 1.23469 1.31948 1.31599 0.85406 0.78819 0.78206 0.78691 1.18641 1.20203 1.20233 1.22298 0.97137 0.90859 0.90004 1.21923 0.96001 0.93142 0.96035 0.89503 1.22185 0.98846 1.00603 0.94457 1.23019 1.03890 0.90710 1.03613 1.23179 0.96410 1.02826 1.00066 0.91532 0.85289 0.92360 0.91096 0.88129 0.83941 0.84263 0.91381 0.91279 0.97998 0.98108 0.92635 0.88584 0.89273 0.85127 0.89740 0.87457 0.87796 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.36 -5.77 10.57 -51.45 -0.54 -6.31 16 3 C 0.47 8.43 6.71 71.23 0.48 8.90 16 4 O -0.52 -11.72 12.94 21.95 0.28 -11.44 16 5 C -0.08 -1.16 2.84 -10.36 -0.03 -1.19 16 6 H 0.15 1.39 8.04 -2.39 -0.02 1.37 16 7 C 0.13 2.21 6.48 86.73 0.56 2.77 16 8 N -1.01 -20.99 3.62 -506.43 -1.83 -22.83 16 9 S 2.65 75.09 5.65 -56.49 -0.32 74.78 16 10 O -0.98 -32.80 17.60 -127.65 -2.25 -35.04 16 11 O -0.98 -32.43 17.61 -127.65 -2.25 -34.67 16 12 C -0.61 -18.85 6.18 71.98 0.44 -18.40 16 13 C -0.11 -4.33 5.16 30.59 0.16 -4.17 16 14 C 0.03 1.61 4.97 29.85 0.15 1.76 16 15 C -0.55 -31.55 9.11 25.60 0.23 -31.31 16 16 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 17 C 0.00 0.08 5.46 84.65 0.46 0.54 16 18 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 19 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 20 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 C 0.12 2.00 6.36 86.86 0.55 2.55 16 24 C -0.05 -0.78 2.33 -9.40 -0.02 -0.80 16 25 H 0.09 1.65 7.27 -2.39 -0.02 1.63 16 26 C -0.14 -1.77 5.17 -10.79 -0.06 -1.83 16 27 C -0.18 -2.42 10.20 30.62 0.31 -2.11 16 28 C -0.19 -2.63 9.83 30.62 0.30 -2.33 16 29 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 30 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.76 8.13 -2.38 -0.02 0.74 16 32 H 0.07 1.25 7.81 -2.39 -0.02 1.23 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.14 3.92 8.14 -2.39 -0.02 3.90 16 35 H 0.14 3.89 8.14 -2.39 -0.02 3.87 16 36 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.07 2.74 8.14 -2.39 -0.02 2.73 16 38 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.10 1.28 7.92 -2.39 -0.02 1.26 16 42 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.13 1.13 7.99 -2.38 -0.02 1.12 16 44 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 45 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.09 1.66 5.30 -2.39 -0.01 1.65 16 Total: -1.00 -76.60 397.78 1.10 -75.51 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.95 Total: 13.73 kcal Atomic # 6 Polarization: -48.84 SS G_CDS: 4.74 Total: -44.10 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -1.55 Total: -78.87 kcal Atomic # 8 Polarization: -82.72 SS G_CDS: -4.75 Total: -87.47 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 75.09 SS G_CDS: -0.32 Total: 74.78 kcal Total: -76.60 1.10 -75.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593669571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.216 kcal (2) G-P(sol) polarization free energy of solvation -76.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds