Wall clock time and date at job start Wed Apr 1 2020 03:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34228 * 117.00568 * 2 1 4 4 O 1.20824 * 119.99485 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00200 * 180.02562 * 3 2 1 6 6 C 1.53002 * 112.84916 * 294.75878 * 5 3 2 7 7 S 1.81399 * 109.47121 * 297.35538 * 6 5 3 8 8 O 1.42102 * 110.54662 * 73.99124 * 7 6 5 9 9 O 1.42099 * 110.54472 * 297.24245 * 7 6 5 10 10 N 1.65602 * 104.45061 * 185.61535 * 7 6 5 11 11 C 1.46923 * 120.62790 * 89.99843 * 10 7 6 12 12 C 1.53192 * 108.77701 * 233.58905 * 11 10 7 13 13 C 1.53041 * 109.33719 * 305.34905 * 12 11 10 14 14 C 1.53106 * 109.50207 * 61.34672 * 13 12 11 15 15 H 1.09007 * 109.51416 * 58.63022 * 14 13 12 16 16 C 1.50702 * 109.49073 * 178.69902 * 14 13 12 17 17 H 1.08005 * 119.99950 * 119.85318 * 16 14 13 18 18 C 1.37879 * 120.00198 * 299.85716 * 16 14 13 19 19 N 1.31521 * 119.99642 * 359.97438 * 18 16 14 20 20 Si 1.86791 * 120.00424 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47159 * 89.99656 * 20 18 16 22 22 H 1.48496 * 109.47585 * 210.00078 * 20 18 16 23 23 H 1.48501 * 109.46946 * 330.00278 * 20 18 16 24 24 C 1.46922 * 120.62988 * 269.97563 * 10 7 6 25 25 C 1.53780 * 113.61706 * 65.95505 * 5 3 2 26 26 C 1.53963 * 87.01672 * 89.22706 * 25 5 3 27 27 C 1.53777 * 113.61181 * 163.56492 * 5 3 2 28 28 H 1.09006 * 109.47091 * 299.99925 * 1 2 3 29 29 H 1.09005 * 109.47487 * 59.99525 * 1 2 3 30 30 H 1.08998 * 109.47918 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47109 * 177.35602 * 6 5 3 32 32 H 1.08996 * 109.46628 * 57.35188 * 6 5 3 33 33 H 1.09002 * 109.58825 * 113.79971 * 11 10 7 34 34 H 1.09006 * 109.70739 * 353.44813 * 11 10 7 35 35 H 1.09001 * 109.49732 * 65.31343 * 12 11 10 36 36 H 1.08994 * 109.50024 * 185.38277 * 12 11 10 37 37 H 1.08997 * 109.46206 * 181.39818 * 13 12 11 38 38 H 1.08995 * 109.46157 * 301.36476 * 13 12 11 39 39 H 0.96999 * 119.99917 * 179.97438 * 19 18 16 40 40 H 1.08993 * 109.58513 * 246.19922 * 24 10 7 41 41 H 1.08996 * 109.58841 * 6.48362 * 24 10 7 42 42 H 1.08994 * 113.61678 * 203.74487 * 25 5 3 43 43 H 1.08996 * 113.61160 * 334.65684 * 25 5 3 44 44 H 1.08992 * 113.53950 * 270.80772 * 26 25 5 45 45 H 1.09001 * 113.66280 * 139.92973 * 26 25 5 46 46 H 1.09002 * 113.61925 * 25.34667 * 27 5 3 47 47 H 1.09001 * 113.61385 * 156.16830 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1911 0.7158 1.2794 7 16 3.6497 1.7067 2.6991 8 8 2.2954 1.4200 3.0200 9 8 4.1049 3.0470 2.5744 10 7 4.5095 1.1007 3.9781 11 6 5.8229 1.6582 4.3284 12 6 6.8434 0.5171 4.3861 13 6 6.3426 -0.5625 5.3483 14 6 5.0144 -1.1268 4.8368 15 1 5.1549 -1.5399 3.8378 16 6 4.5375 -2.2120 5.7673 17 1 3.5875 -2.1124 6.2712 18 6 5.3141 -3.3322 5.9755 19 7 6.4708 -3.4537 5.3615 20 14 4.7234 -4.6770 7.1294 21 1 3.9311 -5.6731 6.3643 22 1 5.8945 -5.3470 7.7496 23 1 3.8746 -4.0802 8.1918 24 6 3.9731 -0.0044 4.7842 25 6 4.2111 0.7338 -1.2877 26 6 4.0851 2.1599 -1.8543 27 6 4.1107 2.6566 -0.3992 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 5.2774 0.7563 1.2012 32 1 3.8749 -0.3183 1.4164 33 1 5.7650 2.1462 5.3014 34 1 6.1277 2.3832 3.5737 35 1 6.9670 0.0889 3.3914 36 1 7.8004 0.9024 4.7379 37 1 7.0788 -1.3639 5.4099 38 1 6.1955 -0.1279 6.3370 39 1 7.0173 -4.2416 5.5082 40 1 3.7644 0.3480 5.7942 41 1 3.0548 -0.3760 4.3298 42 1 5.2422 0.4062 -1.1552 43 1 3.5963 0.0001 -1.8089 44 1 3.1385 2.3444 -2.3621 45 1 4.9489 2.4763 -2.4389 46 1 3.4150 3.4728 -0.2042 47 1 5.1137 2.8561 -0.0221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594804053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:31 Heat of formation + Delta-G solvation = -137.547352 kcal Electronic energy + Delta-G solvation = -30649.906759 eV Core-core repulsion = 26539.725062 eV Total energy + Delta-G solvation = -4110.181697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27433 -38.65922 -37.77742 -36.91436 -36.45588 -35.69707 -33.35780 -31.15581 -30.94464 -30.15064 -28.03747 -25.99105 -25.16093 -24.77602 -23.57793 -22.23668 -21.71608 -19.64610 -19.47090 -18.38401 -17.57788 -17.35514 -16.93105 -16.60784 -16.19571 -15.94717 -15.70724 -15.10529 -14.77052 -14.64505 -14.07027 -13.68230 -13.49487 -13.30623 -13.24333 -13.16758 -12.84426 -12.77450 -12.67302 -12.41605 -12.22196 -12.11033 -11.86847 -11.75246 -11.36278 -11.32946 -11.17346 -11.02489 -10.89097 -10.88478 -10.80789 -10.74810 -10.48994 -10.35500 -10.30656 -9.99007 -9.81177 -9.41886 -8.90662 -8.49127 -8.19808 -6.07318 -4.14400 0.42861 1.90720 2.43494 2.89365 3.26447 3.33692 3.37479 3.86473 3.98491 4.12345 4.34064 4.35799 4.39619 4.44909 4.54022 4.97597 5.02468 5.11659 5.15417 5.17753 5.24032 5.42139 5.44946 5.48436 5.56276 5.63515 5.65133 5.73281 5.75393 5.81903 5.95584 6.01807 6.21815 6.22813 6.27626 6.43419 6.55450 6.60541 6.81470 6.96925 7.14182 7.37245 7.51530 7.64796 7.85497 8.02598 8.33615 8.89065 9.51055 10.98064 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013708 B = 0.003848 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.082804 B = 7275.234457 C = 7994.919889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.345 6.345 3 C 0.473 3.527 4 O -0.489 6.489 5 C -0.077 4.077 6 C -0.623 4.623 7 S 2.600 3.400 8 O -0.952 6.952 9 O -0.955 6.955 10 N -0.992 5.992 11 C 0.124 3.876 12 C -0.136 4.136 13 C -0.110 4.110 14 C 0.038 3.962 15 H 0.029 0.971 16 C -0.517 4.517 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.124 3.876 25 C -0.109 4.109 26 C -0.144 4.144 27 C -0.129 4.129 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.037 0.963 39 H 0.260 0.740 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 8.072 -13.215 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.261 6.261 3 C 0.315 3.685 4 O -0.376 6.376 5 C -0.080 4.080 6 C -0.750 4.750 7 S 2.692 3.308 8 O -0.943 6.943 9 O -0.945 6.945 10 N -0.831 5.831 11 C -0.002 4.002 12 C -0.175 4.175 13 C -0.148 4.148 14 C 0.018 3.982 15 H 0.047 0.953 16 C -0.555 4.555 17 H 0.076 0.924 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 C 0.001 3.999 25 C -0.147 4.147 26 C -0.181 4.181 27 C -0.166 4.166 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.112 0.888 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.115 8.948 -13.177 16.230 hybrid contribution -0.034 -1.489 0.466 1.561 sum -3.149 7.459 -12.710 15.070 Atomic orbital electron populations 1.23392 0.75635 1.04178 1.02908 1.86472 1.23927 1.32310 1.83353 1.22908 0.90615 0.82080 0.72937 1.90685 1.66472 1.36232 1.44196 1.21361 0.87948 1.01723 0.96933 1.30796 1.12325 1.17439 1.14430 1.05259 0.74782 0.75326 0.75412 1.93587 1.33059 1.85752 1.81856 1.93551 1.82266 1.32305 1.86384 1.57672 1.31484 1.49536 1.44367 1.21428 0.82015 0.95587 1.01156 1.22037 0.96925 0.97098 1.01443 1.21592 1.01108 0.96547 0.95588 1.19017 0.90798 0.90888 0.97454 0.95271 1.21110 1.04888 1.02702 1.26834 0.92355 1.24925 0.94865 0.98041 0.95869 1.69869 1.11477 1.28575 1.42811 0.86596 0.78284 0.82009 0.81134 1.20678 1.21269 1.19844 1.21852 0.97676 0.86056 0.94347 1.23010 1.01990 0.97572 0.92131 1.22957 1.03063 0.95730 0.96393 1.23225 1.03209 0.93956 0.96238 0.91008 0.91908 0.87652 0.83425 0.83429 0.91447 0.90598 0.92565 0.92423 0.88706 0.94455 0.92961 0.91849 0.90643 0.87752 0.89983 0.89865 0.89917 0.88757 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.34 -4.90 10.56 -39.25 -0.41 -5.32 16 3 C 0.47 7.20 5.48 36.01 0.20 7.39 16 4 O -0.49 -8.38 15.69 -18.75 -0.29 -8.67 16 5 C -0.08 -0.99 0.89 -154.85 -0.14 -1.13 16 6 C -0.62 -8.39 5.54 37.16 0.21 -8.19 16 7 S 2.60 44.83 4.97 -107.50 -0.53 44.30 16 8 O -0.95 -19.32 16.06 -57.54 -0.92 -20.24 16 9 O -0.95 -17.26 15.79 -57.54 -0.91 -18.17 16 10 N -0.99 -17.64 3.22 -113.52 -0.37 -18.01 16 11 C 0.12 1.98 6.31 -3.71 -0.02 1.96 16 12 C -0.14 -2.31 6.08 -26.61 -0.16 -2.47 16 13 C -0.11 -2.37 4.97 -26.66 -0.13 -2.50 16 14 C 0.04 0.88 2.25 -91.61 -0.21 0.67 16 15 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 16 C -0.52 -13.33 8.56 -34.44 -0.29 -13.62 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 19 N -0.89 -23.84 11.32 55.43 0.63 -23.21 16 20 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 C 0.12 2.53 5.54 -3.71 -0.02 2.51 16 25 C -0.11 -1.04 7.24 -25.82 -0.19 -1.23 16 26 C -0.14 -1.31 7.81 -25.82 -0.20 -1.51 16 27 C -0.13 -1.50 6.01 -25.92 -0.16 -1.66 16 28 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 30 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.15 1.57 8.12 -51.93 -0.42 1.15 16 32 H 0.15 1.97 8.14 -51.93 -0.42 1.54 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.05 7.11 -51.93 -0.37 0.68 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.53 7.09 -51.93 -0.37 1.16 16 42 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 43 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.24 7.34 -51.93 -0.38 0.86 16 47 H 0.11 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -32.02 384.75 -9.91 -41.93 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.73 Total: 2.95 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -0.15 Total: -16.75 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.26 Total: -41.22 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -2.54 Total: -52.41 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 44.83 SS G_CDS: -0.53 Total: 44.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.02 -9.91 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.613 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds