Wall clock time and date at job start Wed Apr 1 2020 03:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34228 * 117.00568 * 2 1 4 4 O 1.20824 * 119.99485 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00200 * 180.02562 * 3 2 1 6 6 C 1.53002 * 112.84916 * 294.75878 * 5 3 2 7 7 S 1.81399 * 109.47121 * 297.35538 * 6 5 3 8 8 O 1.42102 * 110.54662 * 73.99124 * 7 6 5 9 9 O 1.42099 * 110.54472 * 297.24245 * 7 6 5 10 10 N 1.65602 * 104.45061 * 185.61535 * 7 6 5 11 11 C 1.46923 * 120.62790 * 89.99843 * 10 7 6 12 12 C 1.53192 * 108.77701 * 233.58905 * 11 10 7 13 13 C 1.53041 * 109.33719 * 305.34905 * 12 11 10 14 14 C 1.53106 * 109.50207 * 61.34672 * 13 12 11 15 15 H 1.09007 * 109.51416 * 58.63022 * 14 13 12 16 16 C 1.50702 * 109.49073 * 178.69902 * 14 13 12 17 17 H 1.08005 * 119.99950 * 119.85318 * 16 14 13 18 18 C 1.37879 * 120.00198 * 299.85716 * 16 14 13 19 19 N 1.31521 * 119.99642 * 359.97438 * 18 16 14 20 20 Si 1.86791 * 120.00424 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47159 * 89.99656 * 20 18 16 22 22 H 1.48496 * 109.47585 * 210.00078 * 20 18 16 23 23 H 1.48501 * 109.46946 * 330.00278 * 20 18 16 24 24 C 1.46922 * 120.62988 * 269.97563 * 10 7 6 25 25 C 1.53780 * 113.61706 * 65.95505 * 5 3 2 26 26 C 1.53963 * 87.01672 * 89.22706 * 25 5 3 27 27 C 1.53777 * 113.61181 * 163.56492 * 5 3 2 28 28 H 1.09006 * 109.47091 * 299.99925 * 1 2 3 29 29 H 1.09005 * 109.47487 * 59.99525 * 1 2 3 30 30 H 1.08998 * 109.47918 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47109 * 177.35602 * 6 5 3 32 32 H 1.08996 * 109.46628 * 57.35188 * 6 5 3 33 33 H 1.09002 * 109.58825 * 113.79971 * 11 10 7 34 34 H 1.09006 * 109.70739 * 353.44813 * 11 10 7 35 35 H 1.09001 * 109.49732 * 65.31343 * 12 11 10 36 36 H 1.08994 * 109.50024 * 185.38277 * 12 11 10 37 37 H 1.08997 * 109.46206 * 181.39818 * 13 12 11 38 38 H 1.08995 * 109.46157 * 301.36476 * 13 12 11 39 39 H 0.96999 * 119.99917 * 179.97438 * 19 18 16 40 40 H 1.08993 * 109.58513 * 246.19922 * 24 10 7 41 41 H 1.08996 * 109.58841 * 6.48362 * 24 10 7 42 42 H 1.08994 * 113.61678 * 203.74487 * 25 5 3 43 43 H 1.08996 * 113.61160 * 334.65684 * 25 5 3 44 44 H 1.08992 * 113.53950 * 270.80772 * 26 25 5 45 45 H 1.09001 * 113.66280 * 139.92973 * 26 25 5 46 46 H 1.09002 * 113.61925 * 25.34667 * 27 5 3 47 47 H 1.09001 * 113.61385 * 156.16830 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1911 0.7158 1.2794 7 16 3.6497 1.7067 2.6991 8 8 2.2954 1.4200 3.0200 9 8 4.1049 3.0470 2.5744 10 7 4.5095 1.1007 3.9781 11 6 5.8229 1.6582 4.3284 12 6 6.8434 0.5171 4.3861 13 6 6.3426 -0.5625 5.3483 14 6 5.0144 -1.1268 4.8368 15 1 5.1549 -1.5399 3.8378 16 6 4.5375 -2.2120 5.7673 17 1 3.5875 -2.1124 6.2712 18 6 5.3141 -3.3322 5.9755 19 7 6.4708 -3.4537 5.3615 20 14 4.7234 -4.6770 7.1294 21 1 3.9311 -5.6731 6.3643 22 1 5.8945 -5.3470 7.7496 23 1 3.8746 -4.0802 8.1918 24 6 3.9731 -0.0044 4.7842 25 6 4.2111 0.7338 -1.2877 26 6 4.0851 2.1599 -1.8543 27 6 4.1107 2.6566 -0.3992 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 5.2774 0.7563 1.2012 32 1 3.8749 -0.3183 1.4164 33 1 5.7650 2.1462 5.3014 34 1 6.1277 2.3832 3.5737 35 1 6.9670 0.0889 3.3914 36 1 7.8004 0.9024 4.7379 37 1 7.0788 -1.3639 5.4099 38 1 6.1955 -0.1279 6.3370 39 1 7.0173 -4.2416 5.5082 40 1 3.7644 0.3480 5.7942 41 1 3.0548 -0.3760 4.3298 42 1 5.2422 0.4062 -1.1552 43 1 3.5963 0.0001 -1.8089 44 1 3.1385 2.3444 -2.3621 45 1 4.9489 2.4763 -2.4389 46 1 3.4150 3.4728 -0.2042 47 1 5.1137 2.8561 -0.0221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594804053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:31 Heat of formation + Delta-G solvation = -157.516414 kcal Electronic energy + Delta-G solvation = -30650.772682 eV Core-core repulsion = 26539.725062 eV Total energy + Delta-G solvation = -4111.047620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.31292 -39.59816 -39.31727 -38.33390 -37.59485 -37.11706 -35.18651 -32.70119 -31.93563 -31.86102 -29.00508 -27.01491 -26.77963 -25.82642 -25.06938 -23.32051 -23.13127 -21.12368 -20.53084 -19.81538 -18.94798 -18.58096 -18.14469 -17.96859 -17.65000 -17.23818 -16.98105 -16.56529 -15.95448 -15.66742 -15.48412 -15.11717 -14.82518 -14.70014 -14.41740 -14.35093 -14.31956 -14.13480 -13.82488 -13.50786 -13.40202 -13.30193 -13.24289 -13.04258 -12.88262 -12.77048 -12.65831 -12.52280 -12.29724 -12.07259 -11.93839 -11.87399 -11.78699 -11.74774 -11.58837 -11.42228 -11.31628 -10.96991 -10.74193 -10.38645 -9.75387 -8.05812 -6.18717 -0.88936 0.77960 1.43597 1.45153 1.46085 1.52794 1.56378 2.46509 2.67085 2.95432 3.11522 3.17358 3.21709 3.39387 3.53841 3.72656 3.79421 3.99728 4.18910 4.25233 4.26030 4.28393 4.36685 4.53380 4.59648 4.60467 4.63234 4.69945 4.76127 4.80687 4.90060 4.93400 4.94715 4.96045 5.02528 5.10848 5.13436 5.32040 5.34561 5.39896 5.54341 5.67619 5.74423 6.01388 6.18688 6.40714 6.42848 6.90937 7.48818 8.97581 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013708 B = 0.003848 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.082804 B = 7275.234457 C = 7994.919889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.353 6.353 3 C 0.465 3.535 4 O -0.520 6.520 5 C -0.094 4.094 6 C -0.602 4.602 7 S 2.592 3.408 8 O -0.994 6.994 9 O -0.967 6.967 10 N -0.996 5.996 11 C 0.119 3.881 12 C -0.127 4.127 13 C -0.106 4.106 14 C 0.038 3.962 15 H 0.013 0.987 16 C -0.538 4.538 17 H 0.050 0.950 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.946 3.054 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.136 3.864 25 C -0.097 4.097 26 C -0.134 4.134 27 C -0.138 4.138 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.186 0.814 32 H 0.150 0.850 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.111 0.889 46 H 0.069 0.931 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.930 7.959 -14.856 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.269 6.269 3 C 0.308 3.692 4 O -0.409 6.409 5 C -0.097 4.097 6 C -0.733 4.733 7 S 2.690 3.310 8 O -0.984 6.984 9 O -0.957 6.957 10 N -0.834 5.834 11 C -0.006 4.006 12 C -0.166 4.166 13 C -0.145 4.145 14 C 0.019 3.981 15 H 0.031 0.969 16 C -0.577 4.577 17 H 0.069 0.931 18 C -0.176 4.176 19 N -0.548 5.548 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.198 1.198 24 C 0.011 3.989 25 C -0.135 4.135 26 C -0.171 4.171 27 C -0.175 4.175 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.154 0.846 31 H 0.203 0.797 32 H 0.169 0.831 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.149 0.851 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.130 0.870 46 H 0.088 0.912 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.673 8.860 -14.776 17.310 hybrid contribution -0.540 -1.457 0.940 1.816 sum -2.214 7.403 -13.836 15.847 Atomic orbital electron populations 1.23681 0.74396 1.06231 1.02760 1.86465 1.25353 1.32051 1.82990 1.23519 0.91801 0.81851 0.72050 1.90661 1.67396 1.37126 1.45678 1.21686 0.86560 1.03518 0.97978 1.30612 1.14599 1.16137 1.11942 1.05288 0.73967 0.75530 0.76235 1.93534 1.35610 1.86263 1.83035 1.93528 1.82081 1.33374 1.86764 1.57586 1.32100 1.48652 1.45016 1.21623 0.80802 0.95683 1.02494 1.21946 0.98112 0.95895 1.00622 1.21424 0.99526 0.97083 0.96421 1.18955 0.92281 0.91054 0.95856 0.96868 1.21475 1.04759 1.04030 1.27419 0.93135 1.25549 0.95061 0.99847 0.97178 1.69974 1.12093 1.28991 1.43699 0.85747 0.77846 0.79700 0.79483 1.20317 1.20922 1.19762 1.21497 0.96784 0.86184 0.94456 1.23122 1.03065 0.97908 0.89421 1.22932 1.04018 0.95065 0.95075 1.23383 1.03418 0.92386 0.98333 0.92781 0.90502 0.84566 0.79688 0.83138 0.91175 0.87645 0.91633 0.89874 0.91609 0.95444 0.92986 0.92633 0.91313 0.85103 0.89448 0.90602 0.87019 0.91173 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.56 113.37 1.20 1.69 16 2 O -0.35 -9.87 10.56 -51.40 -0.54 -10.42 16 3 C 0.46 13.95 5.48 71.24 0.39 14.34 16 4 O -0.52 -18.17 15.69 21.97 0.34 -17.82 16 5 C -0.09 -2.24 0.89 -52.40 -0.05 -2.29 16 6 C -0.60 -14.82 5.54 71.98 0.40 -14.42 16 7 S 2.59 87.64 4.97 -56.49 -0.28 87.36 16 8 O -0.99 -41.32 16.06 -127.65 -2.05 -43.37 16 9 O -0.97 -33.92 15.79 -127.65 -2.02 -35.93 16 10 N -1.00 -34.58 3.22 -513.08 -1.65 -36.24 16 11 C 0.12 3.54 6.31 86.36 0.54 4.09 16 12 C -0.13 -4.02 6.08 30.67 0.19 -3.83 16 13 C -0.11 -4.54 4.97 30.64 0.15 -4.39 16 14 C 0.04 1.78 2.25 -11.44 -0.03 1.75 16 15 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 16 C -0.54 -28.22 8.56 25.60 0.22 -28.00 16 17 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 18 C 0.02 1.22 5.30 84.65 0.45 1.67 16 19 N -0.91 -48.95 11.32 21.45 0.24 -48.71 16 20 Si 0.95 42.00 29.54 68.60 2.03 44.03 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C 0.14 5.58 5.54 86.36 0.48 6.06 16 25 C -0.10 -1.50 7.24 31.18 0.23 -1.27 16 26 C -0.13 -2.01 7.81 31.18 0.24 -1.77 16 27 C -0.14 -2.91 6.01 31.12 0.19 -2.72 16 28 H 0.05 1.38 8.13 -2.38 -0.02 1.36 16 29 H 0.08 1.45 8.13 -2.38 -0.02 1.44 16 30 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.19 3.14 8.12 -2.39 -0.02 3.12 16 32 H 0.15 3.73 8.14 -2.39 -0.02 3.71 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.11 2.57 7.11 -2.38 -0.02 2.55 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.07 3.21 6.06 -2.39 -0.01 3.19 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.07 2.87 7.09 -2.39 -0.02 2.86 16 42 H 0.13 1.37 8.09 -2.39 -0.02 1.35 16 43 H 0.09 1.29 8.09 -2.39 -0.02 1.27 16 44 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.07 1.82 7.34 -2.39 -0.02 1.80 16 47 H 0.13 2.14 8.10 -2.39 -0.02 2.12 16 Total: -1.00 -71.43 384.75 1.62 -69.80 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.95 Total: 20.38 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 4.60 Total: -29.09 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -1.41 Total: -84.95 kcal Atomic # 8 Polarization: -103.27 SS G_CDS: -4.26 Total: -107.54 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 87.64 SS G_CDS: -0.28 Total: 87.36 kcal Total: -71.43 1.62 -69.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.712 kcal (2) G-P(sol) polarization free energy of solvation -71.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds