Wall clock time and date at job start Wed Apr 1 2020 03:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45202 * 109.47048 * 2 1 4 4 C 1.34231 * 117.00164 * 184.17437 * 3 2 1 5 5 O 1.20825 * 119.99870 * 354.46586 * 4 3 2 6 6 C 1.50699 * 120.00105 * 174.18179 * 4 3 2 7 7 C 1.52995 * 109.47000 * 187.21971 * 6 4 3 8 8 S 1.81400 * 115.55351 * 66.69035 * 7 6 4 9 9 O 1.42097 * 110.54077 * 290.10187 * 8 7 6 10 10 O 1.42107 * 110.54063 * 66.85033 * 8 7 6 11 11 N 1.65598 * 104.45074 * 178.47468 * 8 7 6 12 12 C 1.46930 * 120.62792 * 266.98441 * 11 8 7 13 13 C 1.52767 * 109.00491 * 233.58284 * 12 11 8 14 14 C 1.53044 * 109.38467 * 305.58911 * 13 12 11 15 15 C 1.53040 * 109.53414 * 61.23905 * 14 13 12 16 16 H 1.08998 * 109.49504 * 58.59280 * 15 14 13 17 17 C 1.50709 * 109.51974 * 178.66749 * 15 14 13 18 18 H 1.07995 * 119.99966 * 119.85665 * 17 15 14 19 19 C 1.37876 * 119.99877 * 299.85386 * 17 15 14 20 20 N 1.31519 * 120.00279 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 119.99744 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47243 * 60.00607 * 21 19 17 23 23 H 1.48504 * 109.47248 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47520 * 300.00174 * 21 19 17 25 25 C 1.46923 * 120.63329 * 87.26242 * 11 8 7 26 26 C 1.52998 * 117.49945 * 281.01454 * 7 6 4 27 27 C 1.53008 * 117.49637 * 212.35928 * 7 6 4 28 28 H 1.08992 * 109.47434 * 299.99785 * 1 2 3 29 29 H 1.09000 * 109.47230 * 60.00455 * 1 2 3 30 30 H 1.09002 * 109.46778 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47343 * 239.99767 * 2 1 3 32 32 H 1.09000 * 109.47230 * 119.99545 * 2 1 3 33 33 H 1.09004 * 109.47078 * 307.21754 * 6 4 3 34 34 H 1.08997 * 109.46919 * 67.22207 * 6 4 3 35 35 H 1.08994 * 109.58987 * 353.41624 * 12 11 8 36 36 H 1.08999 * 109.58793 * 113.84658 * 12 11 8 37 37 H 1.08997 * 109.56430 * 185.55707 * 13 12 11 38 38 H 1.08999 * 109.35988 * 65.50306 * 13 12 11 39 39 H 1.09000 * 109.45603 * 301.22040 * 14 13 12 40 40 H 1.08996 * 109.44741 * 181.25129 * 14 13 12 41 41 H 0.96998 * 120.00115 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.58738 * 246.15602 * 25 11 8 43 43 H 1.09001 * 109.58446 * 6.58094 * 25 11 8 44 44 H 1.09002 * 117.50147 * 0.02562 * 26 7 6 45 45 H 1.09000 * 117.49823 * 145.02229 * 26 7 6 46 46 H 1.09003 * 117.49629 * 214.97689 * 27 7 6 47 47 H 1.08996 * 117.49597 * 359.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3417 1.5460 -0.0871 5 8 4.0815 0.5911 -0.0600 6 6 3.9093 2.9352 -0.2250 7 6 5.4146 2.8476 -0.4837 8 16 5.8943 2.1146 -2.0721 9 8 5.6104 0.7223 -2.0847 10 8 5.4970 2.9531 -3.1485 11 7 7.5483 2.1943 -2.0814 12 6 8.2391 3.3402 -2.6885 13 6 9.2506 2.8263 -3.7115 14 6 10.1818 1.8139 -3.0407 15 6 9.3633 0.6261 -2.5295 16 1 8.8323 0.1650 -3.3622 17 6 10.2844 -0.3858 -1.8981 18 1 10.1626 -0.6524 -0.8587 19 6 11.2827 -0.9713 -2.6475 20 7 11.4315 -0.6464 -3.9132 21 14 12.4249 -2.2251 -1.8646 22 1 11.6296 -3.3755 -1.3654 23 1 13.4036 -2.7018 -2.8747 24 1 13.1494 -1.5953 -0.7316 25 6 8.3531 1.1177 -1.4881 26 6 6.3240 2.5857 0.7185 27 6 6.2930 3.9717 0.0696 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.4262 3.4438 -1.0593 34 1 3.7304 3.4936 0.6939 35 1 7.5129 3.9830 -3.1859 36 1 8.7603 3.9043 -1.9151 37 1 9.8370 3.6608 -4.0959 38 1 8.7206 2.3445 -4.5331 39 1 10.6930 2.2897 -2.2038 40 1 10.9180 1.4632 -3.7640 41 1 12.1336 -1.0586 -4.4405 42 1 8.8837 1.4969 -0.6148 43 1 7.7019 0.2946 -1.1937 44 1 5.8498 2.4753 1.6938 45 1 7.2106 1.9732 0.5549 46 1 7.1593 4.2703 -0.5208 47 1 5.7983 4.7736 0.6174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594804121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:58 Heat of formation + Delta-G solvation = -130.848799 kcal Electronic energy + Delta-G solvation = -30229.872713 eV Core-core repulsion = 26119.981487 eV Total energy + Delta-G solvation = -4109.891226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63875 -38.15723 -37.57142 -36.79369 -36.42374 -35.49846 -33.28189 -32.11220 -31.14833 -30.11112 -29.95805 -25.10909 -23.96918 -23.61249 -22.81940 -22.39556 -21.55626 -20.97978 -19.43598 -18.19713 -17.79916 -17.26934 -17.12654 -16.63752 -16.15535 -15.97235 -15.43822 -14.92343 -14.59712 -14.53052 -13.93846 -13.67719 -13.44005 -13.39522 -13.23173 -13.02989 -12.85619 -12.77058 -12.51959 -12.14601 -12.05098 -11.81270 -11.80203 -11.69594 -11.63701 -11.34876 -11.19552 -10.94526 -10.90519 -10.77741 -10.69285 -10.66849 -10.46159 -10.20163 -10.16881 -9.89104 -9.74951 -9.31984 -8.79921 -8.40119 -8.12456 -5.96645 -4.03918 0.55544 2.06733 2.37486 2.98341 3.16726 3.34002 3.38728 3.41484 4.05002 4.21160 4.30633 4.43079 4.46225 4.58129 4.72185 4.77804 4.89512 5.00802 5.07776 5.12828 5.26043 5.28220 5.33538 5.35986 5.48083 5.53762 5.64508 5.70377 5.70701 5.82053 5.82523 6.07823 6.24916 6.30958 6.36921 6.52428 6.66577 6.68006 6.93529 7.06618 7.27028 7.48854 7.62844 7.75056 8.02015 8.14128 8.43574 8.99317 9.60419 11.08876 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.003482 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.103891 B = 8039.597928 C = 8978.048368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.362 6.362 4 C 0.433 3.567 5 O -0.460 6.460 6 C -0.057 4.057 7 C -0.655 4.655 8 S 2.631 3.369 9 O -0.924 6.924 10 O -0.964 6.964 11 N -0.989 5.989 12 C 0.121 3.879 13 C -0.131 4.131 14 C -0.109 4.109 15 C 0.043 3.957 16 H 0.032 0.968 17 C -0.515 4.515 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.124 3.876 26 C -0.107 4.107 27 C -0.117 4.117 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.035 0.965 40 H 0.094 0.906 41 H 0.261 0.739 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.253 10.682 9.392 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.281 6.281 4 C 0.273 3.727 5 O -0.343 6.343 6 C -0.096 4.096 7 C -0.741 4.741 8 S 2.721 3.279 9 O -0.914 6.914 10 O -0.954 6.954 11 N -0.829 5.829 12 C -0.004 4.004 13 C -0.170 4.170 14 C -0.148 4.148 15 C 0.023 3.977 16 H 0.050 0.950 17 C -0.554 4.554 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 C 0.000 4.000 26 C -0.145 4.145 27 C -0.155 4.155 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.125 0.875 45 H 0.136 0.864 46 H 0.133 0.867 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -16.513 9.965 8.622 21.126 hybrid contribution 0.675 -0.553 0.987 1.317 sum -15.838 9.411 9.609 20.779 Atomic orbital electron populations 1.21810 0.92644 1.03042 1.03388 1.23087 0.95221 0.79970 1.03210 1.86439 1.24535 1.32772 1.84309 1.23705 0.81202 0.92789 0.74984 1.90883 1.59317 1.42297 1.41843 1.20495 0.90278 0.92087 1.06718 1.32229 0.99459 1.19170 1.23229 1.04454 0.73656 0.74806 0.75017 1.93646 1.83111 1.28813 1.85872 1.93535 1.82231 1.70925 1.48724 1.57641 1.22999 1.30493 1.71730 1.21380 0.95958 0.86991 0.96102 1.21865 0.97589 0.99656 0.97892 1.21590 0.98564 0.94555 1.00046 1.18916 0.91994 0.93056 0.93704 0.94990 1.21056 1.14452 1.22810 0.97043 0.92519 1.24938 0.97462 0.96628 0.94800 1.69872 1.33021 1.42968 1.06820 0.86657 0.80525 0.81869 0.78897 1.20249 1.21385 1.20326 1.21871 0.94115 0.86852 0.97114 1.22886 0.98948 0.98664 0.93984 1.22944 0.98918 0.91688 1.01910 0.91601 0.91441 0.90142 0.90684 0.91023 0.86799 0.86269 0.90242 0.92242 0.92542 0.92313 0.94630 0.88774 0.92941 0.92605 0.90125 0.87524 0.86402 0.86702 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.16 0.38 -0.70 16 2 C 0.06 0.61 6.20 37.16 0.23 0.84 16 3 O -0.36 -4.36 10.22 -39.26 -0.40 -4.76 16 4 C 0.43 5.90 7.76 36.00 0.28 6.18 16 5 O -0.46 -7.93 13.41 -25.85 -0.35 -8.27 16 6 C -0.06 -0.60 5.72 -27.89 -0.16 -0.76 16 7 C -0.66 -8.24 1.73 -90.62 -0.16 -8.40 16 8 S 2.63 46.70 5.30 -107.50 -0.57 46.13 16 9 O -0.92 -20.13 14.49 -66.11 -0.96 -21.08 16 10 O -0.96 -18.49 16.50 -57.54 -0.95 -19.44 16 11 N -0.99 -17.73 2.40 -113.77 -0.27 -18.00 16 12 C 0.12 1.96 5.44 -3.93 -0.02 1.93 16 13 C -0.13 -2.47 6.06 -26.83 -0.16 -2.63 16 14 C -0.11 -2.48 4.97 -26.69 -0.13 -2.61 16 15 C 0.04 1.07 2.25 -91.65 -0.21 0.87 16 16 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.51 -13.89 8.56 -34.44 -0.29 -14.19 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.25 11.32 55.43 0.63 -24.63 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.12 2.53 4.27 -3.71 -0.02 2.52 16 26 C -0.11 -1.20 9.57 -26.70 -0.26 -1.46 16 27 C -0.12 -1.10 9.72 -26.69 -0.26 -1.36 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.12 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.08 1.19 6.78 -51.93 -0.35 0.84 16 36 H 0.06 0.80 7.57 -51.93 -0.39 0.41 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 2.42 6.05 -51.93 -0.31 2.11 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.06 1.03 7.52 -51.93 -0.39 0.64 16 43 H 0.08 1.73 6.94 -51.93 -0.36 1.37 16 44 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.12 1.47 5.88 -51.93 -0.31 1.17 16 46 H 0.11 1.07 6.23 -51.93 -0.32 0.75 16 47 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -34.47 381.13 -10.49 -44.95 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.47 Total: 1.32 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -0.87 Total: -18.12 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.35 Total: -42.63 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -2.66 Total: -53.56 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 46.70 SS G_CDS: -0.57 Total: 46.13 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.47 -10.49 -44.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.896 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds