Wall clock time and date at job start Wed Apr 1 2020 03:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34236 * 117.00047 * 2 1 4 4 O 1.20830 * 120.00093 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00036 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.53813 * 60.10083 * 5 3 2 7 7 C 1.53120 * 109.50563 * 299.99985 * 5 3 2 8 8 C 1.53120 * 109.16405 * 182.40483 * 7 5 3 9 9 C 1.53039 * 109.27449 * 57.65414 * 8 7 5 10 10 H 1.08998 * 109.46335 * 60.83013 * 9 8 7 11 11 C 1.50706 * 109.45864 * 180.80543 * 9 8 7 12 12 O 1.20827 * 119.99583 * 90.90328 * 11 9 8 13 13 O 1.34227 * 119.99764 * 270.89827 * 11 9 8 14 14 C 1.45202 * 116.99632 * 180.02562 * 13 11 9 15 15 N 1.46847 * 109.51534 * 300.81592 * 9 8 7 16 16 C 1.46901 * 110.99750 * 185.84706 * 15 9 8 17 17 C 1.52997 * 109.47216 * 164.41005 * 16 15 9 18 18 C 1.52999 * 109.47348 * 180.02562 * 17 16 15 19 19 S 1.80996 * 109.47186 * 179.97438 * 18 17 16 20 20 C 1.76203 * 100.00079 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99838 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00144 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00101 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99858 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46826 * 90.00263 * 24 22 20 26 26 H 1.48500 * 109.46968 * 210.00241 * 24 22 20 27 27 H 1.48497 * 109.47053 * 330.00375 * 24 22 20 28 28 C 1.46846 * 111.19810 * 61.76021 * 15 9 8 29 29 H 1.09007 * 109.46712 * 299.99783 * 1 2 3 30 30 H 1.08997 * 109.47085 * 59.99683 * 1 2 3 31 31 H 1.08994 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.52221 * 62.49781 * 7 5 3 33 33 H 1.09001 * 109.52362 * 302.31099 * 7 5 3 34 34 H 1.08996 * 109.50151 * 297.71713 * 8 7 5 35 35 H 1.08992 * 109.50249 * 177.59550 * 8 7 5 36 36 H 1.08999 * 109.47230 * 60.00247 * 14 13 11 37 37 H 1.09002 * 109.46759 * 180.02562 * 14 13 11 38 38 H 1.09005 * 109.47159 * 300.00116 * 14 13 11 39 39 H 1.09001 * 109.46839 * 284.41028 * 16 15 9 40 40 H 1.09006 * 109.47331 * 44.40737 * 16 15 9 41 41 H 1.09010 * 109.47076 * 300.00033 * 17 16 15 42 42 H 1.08996 * 109.47237 * 59.99675 * 17 16 15 43 43 H 1.08997 * 109.46914 * 299.99587 * 18 17 16 44 44 H 1.08996 * 109.47404 * 59.99548 * 18 17 16 45 45 H 0.97001 * 119.99904 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.45999 * 178.22424 * 28 15 9 47 47 H 1.09010 * 109.46061 * 58.25012 * 28 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9567 0.7829 -0.8913 7 6 4.1151 0.5807 1.2490 8 6 5.6400 0.7176 1.2712 9 6 6.0146 2.2012 1.2395 10 1 5.6027 2.6986 2.1175 11 6 7.5152 2.3402 1.2412 12 8 8.1186 2.3891 0.1955 13 8 8.1813 2.4099 2.4045 14 6 9.6253 2.5438 2.3301 15 7 5.4673 2.8194 0.0251 16 6 5.9231 4.2094 -0.1092 17 6 5.6702 4.6932 -1.5385 18 6 6.1455 6.1407 -1.6786 19 16 5.8470 6.7128 -3.3696 20 6 6.4688 8.3572 -3.2506 21 1 6.8746 8.7147 -2.3158 22 6 6.4371 9.1930 -4.3583 23 7 6.9021 10.4212 -4.2695 24 14 5.7359 8.5743 -5.9754 25 1 4.2801 8.8628 -6.0263 26 1 6.4160 9.2591 -7.1041 27 1 5.9542 7.1093 -6.0814 28 6 4.0010 2.7422 0.0045 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.8444 -0.4749 1.2278 33 1 3.6945 1.0478 2.1396 34 1 6.0631 0.2168 0.4005 35 1 6.0330 0.2625 2.1803 36 1 9.8782 3.4576 1.7926 37 1 10.0383 2.5884 3.3379 38 1 10.0432 1.6853 1.8042 39 1 5.3752 4.8406 0.5903 40 1 6.9895 4.2649 0.1098 41 1 6.2182 4.0619 -2.2381 42 1 4.6039 4.6377 -1.7576 43 1 5.5979 6.7722 -0.9791 44 1 7.2118 6.1959 -1.4597 45 1 6.8803 11.0052 -5.0437 46 1 3.6239 3.2359 -0.8911 47 1 3.5989 3.2371 0.8886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599584358.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:37 Heat of formation + Delta-G solvation = -175.449668 kcal Electronic energy + Delta-G solvation = -28535.448415 eV Core-core repulsion = 24423.623150 eV Total energy + Delta-G solvation = -4111.825264 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32697 -40.69713 -38.92486 -36.84339 -36.48872 -35.15989 -32.53031 -32.39193 -31.63266 -28.50870 -27.95942 -26.53664 -25.60677 -25.18632 -23.71517 -22.20251 -20.95745 -20.82667 -20.05413 -17.96687 -17.87383 -17.50906 -17.19782 -16.92439 -16.72740 -16.51974 -15.53633 -15.12055 -14.94406 -14.90271 -14.54537 -14.24146 -14.04810 -14.01694 -13.57940 -13.42553 -13.19137 -13.04953 -12.80659 -12.64246 -12.47107 -12.26660 -12.10965 -11.98594 -11.77028 -11.50762 -11.29468 -11.13173 -11.11514 -11.01398 -10.94643 -10.92365 -10.70663 -10.42800 -10.24037 -10.09944 -9.73913 -8.96182 -8.63041 -8.50597 -6.88474 -6.24294 -3.95738 1.88432 1.96697 2.22069 2.41960 3.03845 3.33902 3.48274 3.50658 3.72839 4.09146 4.25250 4.35958 4.37305 4.50177 4.60573 4.70074 4.77013 4.83799 4.85241 4.87000 4.88718 4.97290 5.03595 5.09704 5.13932 5.14926 5.20950 5.29750 5.32168 5.39591 5.47115 5.51344 5.62731 5.66456 5.76630 5.85363 5.95050 6.04482 6.13488 6.25704 6.51103 6.60165 6.72803 6.82332 7.41991 7.58275 7.99620 8.48366 9.21861 10.85281 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008513 B = 0.003026 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3288.410283 B = 9251.500591 C =12106.291233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.501 6.501 5 C -0.080 4.080 6 H 0.124 0.876 7 C -0.108 4.108 8 C -0.105 4.105 9 C 0.093 3.907 10 H 0.076 0.924 11 C 0.460 3.540 12 O -0.475 6.475 13 O -0.363 6.363 14 C 0.035 3.965 15 N -0.518 5.518 16 C 0.055 3.945 17 C -0.093 4.093 18 C -0.082 4.082 19 S -0.213 6.213 20 C -0.501 4.501 21 H 0.087 0.913 22 C 0.091 3.909 23 N -0.883 5.883 24 Si 0.862 3.138 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.237 1.237 28 C 0.072 3.928 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.270 0.730 46 H 0.101 0.899 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.677 -25.888 16.467 31.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.387 6.387 5 C -0.100 4.100 6 H 0.142 0.858 7 C -0.145 4.145 8 C -0.143 4.143 9 C -0.016 4.016 10 H 0.094 0.906 11 C 0.301 3.699 12 O -0.359 6.359 13 O -0.280 6.280 14 C -0.059 4.059 15 N -0.244 5.244 16 C -0.073 4.073 17 C -0.131 4.131 18 C -0.231 4.231 19 S 0.015 5.985 20 C -0.648 4.648 21 H 0.105 0.895 22 C -0.117 4.117 23 N -0.520 5.520 24 Si 0.687 3.313 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.161 1.161 28 C -0.056 4.056 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.119 0.881 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.914 -26.180 14.772 30.636 hybrid contribution 0.012 1.343 0.861 1.596 sum -5.902 -24.837 15.634 29.935 Atomic orbital electron populations 1.23285 0.76200 1.03710 1.02731 1.86495 1.23499 1.33364 1.84106 1.23648 0.91759 0.81416 0.72280 1.90716 1.67116 1.36267 1.44613 1.21119 0.86774 0.99255 1.02817 0.85832 1.21561 0.94979 1.01861 0.96145 1.21565 0.95954 0.92549 1.04199 1.21271 0.87604 0.98401 0.94369 0.90645 1.23446 0.91109 0.73389 0.81983 1.90738 1.69525 1.42940 1.32701 1.86489 1.23011 1.83766 1.34733 1.23292 0.76152 1.02664 1.03748 1.61666 1.08516 1.19276 1.34947 1.22316 1.00872 0.85624 0.98491 1.21275 1.01921 0.94885 0.95059 1.22997 1.03019 0.97246 0.99800 1.84152 1.83311 1.18065 1.12959 1.22136 1.46381 0.94424 1.01894 0.89474 1.24796 0.94052 0.94091 0.98762 1.69943 1.44738 1.06175 1.31180 0.86668 0.79921 0.81718 0.83042 1.19394 1.20139 1.16096 1.21995 0.86214 0.93519 1.03847 0.91882 0.91713 0.88057 0.89345 0.91037 0.89470 0.89675 0.91587 0.88068 0.91789 0.94158 0.90294 0.90273 0.91453 0.91645 0.91449 0.92028 0.88112 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.07 10.49 -39.27 -0.41 -3.48 16 3 C 0.47 4.69 7.26 36.00 0.26 4.95 16 4 O -0.50 -6.60 15.73 -18.75 -0.30 -6.90 16 5 C -0.08 -0.68 2.79 -91.69 -0.26 -0.94 16 6 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 7 C -0.11 -0.68 5.21 -26.61 -0.14 -0.82 16 8 C -0.10 -0.73 5.36 -26.65 -0.14 -0.87 16 9 C 0.09 0.90 2.34 -68.87 -0.16 0.74 16 10 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 11 C 0.46 5.36 5.82 36.01 0.21 5.57 16 12 O -0.47 -7.09 15.13 -18.75 -0.28 -7.38 16 13 O -0.36 -3.69 10.57 -39.25 -0.41 -4.10 16 14 C 0.04 0.28 10.56 101.05 1.07 1.35 16 15 N -0.52 -6.06 4.21 -228.07 -0.96 -7.02 16 16 C 0.06 0.77 4.60 -3.82 -0.02 0.75 16 17 C -0.09 -1.54 5.26 -26.73 -0.14 -1.68 16 18 C -0.08 -1.66 5.67 37.16 0.21 -1.45 16 19 S -0.21 -5.39 19.41 -107.50 -2.09 -7.47 16 20 C -0.50 -14.94 10.04 30.94 0.31 -14.63 16 21 H 0.09 2.76 8.03 -52.49 -0.42 2.34 16 22 C 0.09 2.73 5.50 -17.43 -0.10 2.63 16 23 N -0.88 -27.36 13.97 55.49 0.78 -26.59 16 24 Si 0.86 22.12 27.74 -169.99 -4.72 17.40 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 28 C 0.07 0.77 3.88 -3.83 -0.01 0.75 16 29 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 30 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 39 H 0.04 0.53 8.06 -51.93 -0.42 0.11 16 40 H 0.08 1.18 5.69 -51.93 -0.30 0.88 16 41 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 42 H 0.07 1.09 6.63 -51.93 -0.34 0.75 16 43 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 44 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 45 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 46 H 0.10 1.24 6.45 -51.93 -0.33 0.90 16 47 H 0.05 0.54 8.08 -51.92 -0.42 0.12 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -35.70 396.41 -7.99 -43.69 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.73 Total: -1.77 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 2.16 Total: -2.36 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: -0.19 Total: -33.61 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -1.41 Total: -21.86 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.72 Total: 17.40 kcal Atomic # 16 Polarization: -5.39 SS G_CDS: -2.09 Total: -7.47 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.70 -7.99 -43.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599584358.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.755 kcal (2) G-P(sol) polarization free energy of solvation -35.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds