Wall clock time and date at job start Wed Apr 1 2020 03:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34236 * 117.00047 * 2 1 4 4 O 1.20830 * 120.00093 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00036 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.53813 * 60.10083 * 5 3 2 7 7 C 1.53120 * 109.50563 * 299.99985 * 5 3 2 8 8 C 1.53120 * 109.16405 * 182.40483 * 7 5 3 9 9 C 1.53039 * 109.27449 * 57.65414 * 8 7 5 10 10 H 1.08998 * 109.46335 * 60.83013 * 9 8 7 11 11 C 1.50706 * 109.45864 * 180.80543 * 9 8 7 12 12 O 1.20827 * 119.99583 * 90.90328 * 11 9 8 13 13 O 1.34227 * 119.99764 * 270.89827 * 11 9 8 14 14 C 1.45202 * 116.99632 * 180.02562 * 13 11 9 15 15 N 1.46847 * 109.51534 * 300.81592 * 9 8 7 16 16 C 1.46901 * 110.99750 * 185.84706 * 15 9 8 17 17 C 1.52997 * 109.47216 * 164.41005 * 16 15 9 18 18 C 1.52999 * 109.47348 * 180.02562 * 17 16 15 19 19 S 1.80996 * 109.47186 * 179.97438 * 18 17 16 20 20 C 1.76203 * 100.00079 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99838 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00144 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00101 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99858 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46826 * 90.00263 * 24 22 20 26 26 H 1.48500 * 109.46968 * 210.00241 * 24 22 20 27 27 H 1.48497 * 109.47053 * 330.00375 * 24 22 20 28 28 C 1.46846 * 111.19810 * 61.76021 * 15 9 8 29 29 H 1.09007 * 109.46712 * 299.99783 * 1 2 3 30 30 H 1.08997 * 109.47085 * 59.99683 * 1 2 3 31 31 H 1.08994 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.52221 * 62.49781 * 7 5 3 33 33 H 1.09001 * 109.52362 * 302.31099 * 7 5 3 34 34 H 1.08996 * 109.50151 * 297.71713 * 8 7 5 35 35 H 1.08992 * 109.50249 * 177.59550 * 8 7 5 36 36 H 1.08999 * 109.47230 * 60.00247 * 14 13 11 37 37 H 1.09002 * 109.46759 * 180.02562 * 14 13 11 38 38 H 1.09005 * 109.47159 * 300.00116 * 14 13 11 39 39 H 1.09001 * 109.46839 * 284.41028 * 16 15 9 40 40 H 1.09006 * 109.47331 * 44.40737 * 16 15 9 41 41 H 1.09010 * 109.47076 * 300.00033 * 17 16 15 42 42 H 1.08996 * 109.47237 * 59.99675 * 17 16 15 43 43 H 1.08997 * 109.46914 * 299.99587 * 18 17 16 44 44 H 1.08996 * 109.47404 * 59.99548 * 18 17 16 45 45 H 0.97001 * 119.99904 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.45999 * 178.22424 * 28 15 9 47 47 H 1.09010 * 109.46061 * 58.25012 * 28 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9567 0.7829 -0.8913 7 6 4.1151 0.5807 1.2490 8 6 5.6400 0.7176 1.2712 9 6 6.0146 2.2012 1.2395 10 1 5.6027 2.6986 2.1175 11 6 7.5152 2.3402 1.2412 12 8 8.1186 2.3891 0.1955 13 8 8.1813 2.4099 2.4045 14 6 9.6253 2.5438 2.3301 15 7 5.4673 2.8194 0.0251 16 6 5.9231 4.2094 -0.1092 17 6 5.6702 4.6932 -1.5385 18 6 6.1455 6.1407 -1.6786 19 16 5.8470 6.7128 -3.3696 20 6 6.4688 8.3572 -3.2506 21 1 6.8746 8.7147 -2.3158 22 6 6.4371 9.1930 -4.3583 23 7 6.9021 10.4212 -4.2695 24 14 5.7359 8.5743 -5.9754 25 1 4.2801 8.8628 -6.0263 26 1 6.4160 9.2591 -7.1041 27 1 5.9542 7.1093 -6.0814 28 6 4.0010 2.7422 0.0045 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.8444 -0.4749 1.2278 33 1 3.6945 1.0478 2.1396 34 1 6.0631 0.2168 0.4005 35 1 6.0330 0.2625 2.1803 36 1 9.8782 3.4576 1.7926 37 1 10.0383 2.5884 3.3379 38 1 10.0432 1.6853 1.8042 39 1 5.3752 4.8406 0.5903 40 1 6.9895 4.2649 0.1098 41 1 6.2182 4.0619 -2.2381 42 1 4.6039 4.6377 -1.7576 43 1 5.5979 6.7722 -0.9791 44 1 7.2118 6.1959 -1.4597 45 1 6.8803 11.0052 -5.0437 46 1 3.6239 3.2359 -0.8911 47 1 3.5989 3.2371 0.8886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599584358.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:37 Heat of formation + Delta-G solvation = -198.421146 kcal Electronic energy + Delta-G solvation = -28536.444533 eV Core-core repulsion = 24423.623150 eV Total energy + Delta-G solvation = -4112.821382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.14190 -41.50290 -39.74029 -37.61944 -37.36230 -36.19624 -34.70899 -33.48608 -32.58125 -29.14875 -28.61094 -28.07800 -27.43612 -25.93784 -24.76483 -22.91730 -22.19930 -21.65298 -20.78363 -19.64653 -18.79037 -18.63633 -18.11681 -17.68165 -17.52167 -17.30316 -17.12927 -16.55407 -16.33064 -15.98752 -15.46158 -15.17412 -15.07472 -14.94588 -14.84835 -14.44202 -14.26591 -14.08063 -13.87108 -13.59355 -13.47886 -13.39095 -13.20598 -13.07730 -12.99958 -12.77779 -12.62724 -12.49954 -12.17197 -12.00135 -11.87035 -11.79859 -11.75265 -11.69855 -11.52371 -11.36040 -11.19397 -11.17545 -10.60332 -9.54125 -9.02067 -8.54194 -6.25704 1.07481 1.10288 1.13054 1.30200 1.46020 1.48940 1.70237 1.73160 2.23269 2.63394 2.72290 2.83691 3.41192 3.56197 3.72997 3.76845 3.86629 3.94326 3.99989 4.11980 4.15659 4.23729 4.30181 4.30523 4.32305 4.33838 4.35611 4.47255 4.55064 4.58524 4.67223 4.71243 4.74000 4.75162 4.77124 4.95983 5.06683 5.08680 5.18153 5.25113 5.32193 5.36271 5.67499 5.73935 5.80958 6.07364 6.68924 6.72476 6.89733 8.59090 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008513 B = 0.003026 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3288.410283 B = 9251.500591 C =12106.291233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.076 4.076 6 H 0.130 0.870 7 C -0.099 4.099 8 C -0.098 4.098 9 C 0.090 3.910 10 H 0.092 0.908 11 C 0.462 3.538 12 O -0.515 6.515 13 O -0.362 6.362 14 C 0.029 3.971 15 N -0.525 5.525 16 C 0.065 3.935 17 C -0.079 4.079 18 C -0.069 4.069 19 S -0.217 6.217 20 C -0.523 4.523 21 H 0.050 0.950 22 C 0.038 3.962 23 N -0.922 5.922 24 Si 0.926 3.074 25 H -0.260 1.260 26 H -0.261 1.261 27 H -0.231 1.231 28 C 0.074 3.926 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.133 0.867 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.052 0.948 37 H 0.134 0.866 38 H 0.066 0.934 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.277 0.723 46 H 0.080 0.920 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 -28.757 17.269 34.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.095 4.095 6 H 0.148 0.852 7 C -0.137 4.137 8 C -0.135 4.135 9 C -0.019 4.019 10 H 0.110 0.890 11 C 0.304 3.696 12 O -0.402 6.402 13 O -0.278 6.278 14 C -0.064 4.064 15 N -0.251 5.251 16 C -0.064 4.064 17 C -0.118 4.118 18 C -0.218 4.218 19 S 0.011 5.989 20 C -0.670 4.670 21 H 0.068 0.932 22 C -0.167 4.167 23 N -0.560 5.560 24 Si 0.747 3.253 25 H -0.185 1.185 26 H -0.185 1.185 27 H -0.154 1.154 28 C -0.053 4.053 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.071 0.929 37 H 0.152 0.848 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.897 -29.075 15.606 33.712 hybrid contribution 0.355 2.211 0.759 2.364 sum -6.543 -26.865 16.365 32.130 Atomic orbital electron populations 1.23546 0.74924 1.05723 1.02384 1.86489 1.24750 1.32367 1.83543 1.23878 0.92184 0.81258 0.71131 1.90706 1.67994 1.37523 1.46572 1.21103 0.85970 0.97920 1.04522 0.85186 1.21570 0.94173 1.02907 0.95018 1.21595 0.96405 0.90293 1.05234 1.21490 0.86265 1.00299 0.93821 0.88995 1.23864 0.91878 0.72119 0.81705 1.90725 1.70456 1.45003 1.34053 1.86489 1.24115 1.83223 1.33931 1.23533 0.75107 1.02109 1.05700 1.61562 1.09150 1.17625 1.36740 1.22065 1.00418 0.87440 0.96470 1.21131 1.01811 0.91922 0.96964 1.23038 1.02785 0.99566 0.96368 1.83851 1.82972 1.14935 1.17141 1.22330 1.46698 0.97207 1.00774 0.93211 1.25784 0.94200 0.94192 1.02504 1.70036 1.45743 1.07505 1.32737 0.85711 0.79543 0.81540 0.78540 1.18476 1.18495 1.15398 1.21927 0.85399 0.95150 1.02868 0.91910 0.92467 0.84881 0.87175 0.90217 0.90038 0.87171 0.92930 0.84818 0.91559 0.93341 0.91407 0.91211 0.90903 0.91513 0.92148 0.91334 0.90115 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.33 10.49 -51.47 -0.54 -5.87 16 3 C 0.47 8.78 7.26 71.23 0.52 9.30 16 4 O -0.54 -13.91 15.73 21.95 0.35 -13.57 16 5 C -0.08 -1.15 2.79 -11.49 -0.03 -1.18 16 6 H 0.13 1.83 8.14 -2.39 -0.02 1.82 16 7 C -0.10 -0.93 5.21 30.67 0.16 -0.77 16 8 C -0.10 -1.07 5.36 30.65 0.16 -0.90 16 9 C 0.09 1.57 2.34 44.19 0.10 1.68 16 10 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 11 C 0.46 10.24 5.82 71.24 0.41 10.65 16 12 O -0.52 -15.31 15.13 21.96 0.33 -14.98 16 13 O -0.36 -6.76 10.57 -51.39 -0.54 -7.30 16 14 C 0.03 0.42 10.56 113.37 1.20 1.62 16 15 N -0.52 -11.70 4.21 -875.47 -3.69 -15.39 16 16 C 0.07 1.78 4.60 86.30 0.40 2.18 16 17 C -0.08 -2.62 5.26 30.59 0.16 -2.46 16 18 C -0.07 -2.83 5.67 71.98 0.41 -2.43 16 19 S -0.22 -11.05 19.41 -56.49 -1.10 -12.14 16 20 C -0.52 -32.04 10.04 67.95 0.68 -31.36 16 21 H 0.05 3.31 8.03 -2.91 -0.02 3.28 16 22 C 0.04 2.30 5.50 84.86 0.47 2.76 16 23 N -0.92 -58.22 13.97 21.65 0.30 -57.92 16 24 Si 0.93 45.62 27.74 68.60 1.90 47.52 16 25 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 27 H -0.23 -11.04 6.74 99.48 0.67 -10.37 16 28 C 0.07 1.50 3.88 86.33 0.33 1.84 16 29 H 0.06 0.69 8.13 -2.38 -0.02 0.67 16 30 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 31 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 37 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 0.95 8.13 -2.38 -0.02 0.93 16 39 H 0.05 1.24 8.06 -2.39 -0.02 1.22 16 40 H 0.07 2.03 5.69 -2.38 -0.01 2.02 16 41 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 42 H 0.07 2.34 6.63 -2.39 -0.02 2.33 16 43 H 0.07 2.74 8.14 -2.40 -0.02 2.72 16 44 H 0.06 2.57 8.14 -2.40 -0.02 2.55 16 45 H 0.28 16.08 8.31 -92.71 -0.77 15.31 16 46 H 0.08 1.96 6.45 -2.39 -0.02 1.95 16 47 H 0.05 1.02 8.08 -2.38 -0.02 1.00 16 Total: -1.00 -79.08 396.41 4.10 -74.98 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.92 Total: 12.25 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 6.17 Total: -7.58 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -3.39 Total: -73.31 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.41 Total: -41.72 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Atomic # 16 Polarization: -11.05 SS G_CDS: -1.10 Total: -12.14 kcal Total: -79.08 4.10 -74.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599584358.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.437 kcal (2) G-P(sol) polarization free energy of solvation -79.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds