Wall clock time and date at job start Wed Apr 1 2020 03:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35987 * 116.99863 * 2 1 4 4 C 1.38558 * 120.07562 * 0.02675 * 3 2 1 5 5 C 1.38249 * 120.00205 * 179.70691 * 4 3 2 6 6 C 1.38247 * 120.14275 * 0.53951 * 5 4 3 7 7 C 1.50703 * 119.92840 * 179.72508 * 6 5 4 8 8 C 1.50696 * 109.47568 * 269.73350 * 7 6 5 9 9 O 1.21289 * 119.99762 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00038 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00377 * 0.02562 * 10 8 7 12 12 C 1.50704 * 109.47158 * 270.00187 * 11 10 8 13 13 H 1.08004 * 120.00008 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00004 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00307 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00235 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46458 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47024 * 119.99906 * 16 14 12 19 19 H 1.48495 * 109.47092 * 240.00570 * 16 14 12 20 20 C 1.46506 * 119.99868 * 180.02562 * 10 8 7 21 21 C 1.50703 * 109.47289 * 89.99907 * 20 10 8 22 22 C 1.34508 * 125.78448 * 90.00098 * 21 20 10 23 23 C 1.41394 * 106.83701 * 179.97438 * 22 21 20 24 24 C 1.34513 * 106.83758 * 359.97438 * 23 22 21 25 25 O 1.34295 * 125.78633 * 269.69055 * 21 20 10 26 26 C 1.38249 * 120.15108 * 359.46123 * 6 5 4 27 27 C 1.38570 * 119.99382 * 0.26852 * 26 6 5 28 28 O 1.35990 * 120.07193 * 179.97438 * 27 26 6 29 29 H 1.08998 * 109.47621 * 60.00078 * 1 2 3 30 30 H 1.09007 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46994 * 299.99284 * 1 2 3 32 32 H 1.08006 * 119.99942 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.92964 * 180.29526 * 5 4 3 34 34 H 1.09003 * 109.47198 * 149.72660 * 7 6 5 35 35 H 1.09003 * 109.46308 * 29.73592 * 7 6 5 36 36 H 1.08997 * 109.46694 * 29.99578 * 11 10 8 37 37 H 1.08995 * 109.47258 * 149.99854 * 11 10 8 38 38 H 0.96996 * 120.00505 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.47060 * 210.00357 * 20 10 8 40 40 H 1.09004 * 109.47073 * 329.99846 * 20 10 8 41 41 H 1.08001 * 126.58556 * 359.96469 * 22 21 20 42 42 H 1.07997 * 126.57684 * 179.97438 * 23 22 21 43 43 H 1.07998 * 125.78636 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00262 * 180.24578 * 26 6 5 45 45 H 0.96701 * 114.00141 * 89.99279 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2932 2.3747 0.0006 5 6 1.9224 3.6057 0.0067 6 6 3.3028 3.6798 0.0010 7 6 3.9837 5.0243 0.0015 8 6 4.2105 5.4731 -1.4191 9 8 3.8548 4.7701 -2.3413 10 7 4.8086 6.6555 -1.6649 11 6 5.2388 7.5044 -0.5511 12 6 4.1184 8.4369 -0.1684 13 1 3.1800 8.4011 -0.7018 14 6 4.2915 9.3357 0.8627 15 7 5.4340 9.3790 1.5125 16 14 2.9031 10.4921 1.3367 17 1 1.7313 10.2445 0.4587 18 1 2.5205 10.2525 2.7514 19 1 3.3536 11.8980 1.1769 20 6 5.0286 7.0921 -3.0460 21 6 3.8362 7.8832 -3.5188 22 6 3.6785 9.2138 -3.4015 23 6 2.4252 9.5298 -3.9748 24 6 1.8925 8.3733 -4.4086 25 8 2.7537 7.3799 -4.1339 26 6 4.0603 2.5233 0.0004 27 6 3.4359 1.2862 -0.0001 28 8 4.1795 0.1476 -0.0012 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.2146 2.3195 0.0006 33 1 1.3342 4.5115 0.0119 34 1 4.9418 4.9462 0.5153 35 1 3.3537 5.7502 0.5157 36 1 5.4987 6.8790 0.3029 37 1 6.1091 8.0868 -0.8533 38 1 5.5557 10.0111 2.2382 39 1 5.9206 7.7169 -3.0919 40 1 5.1628 6.2198 -3.6858 41 1 4.3752 9.9077 -2.9550 42 1 1.9809 10.5113 -4.0500 43 1 0.9362 8.2628 -4.8982 44 1 5.1386 2.5840 0.0000 45 1 4.3951 -0.1822 0.8819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601023410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:08 Heat of formation + Delta-G solvation = -69.401598 kcal Electronic energy + Delta-G solvation = -30274.635661 eV Core-core repulsion = 26031.965034 eV Total energy + Delta-G solvation = -4242.670626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.96560 -40.37627 -39.12491 -37.73735 -36.55650 -35.13413 -32.76811 -32.36460 -31.86697 -30.22790 -29.88352 -28.04780 -27.36182 -26.54761 -24.80202 -22.99470 -22.52242 -21.45916 -21.15085 -20.09571 -18.73490 -18.17416 -17.44367 -17.02516 -16.63630 -16.42628 -16.30516 -15.86647 -15.55006 -15.16039 -14.73239 -14.67317 -14.36282 -14.35141 -13.93884 -13.82736 -13.53399 -12.96607 -12.48272 -12.38383 -12.25831 -12.20813 -12.16055 -12.08983 -11.90133 -11.52557 -11.44282 -11.17142 -11.05912 -10.98101 -10.89322 -10.77812 -10.46631 -10.23309 -9.79569 -9.30830 -9.17786 -8.69320 -8.60205 -8.06437 -7.88688 -7.75508 -6.21436 -4.26945 1.37338 1.47773 2.23293 3.11904 3.18797 3.22069 3.28374 3.31223 3.35202 3.64873 3.69693 4.07292 4.27418 4.34516 4.83368 4.96253 5.03149 5.07800 5.12517 5.22651 5.26162 5.35323 5.36123 5.52320 5.56545 5.58511 5.68657 5.73677 5.85574 5.98242 6.07162 6.19623 6.32304 6.33793 6.36657 6.52915 6.60065 6.65683 6.79462 6.81356 7.06623 7.10760 7.23205 7.43561 7.72380 7.75088 7.81437 8.02065 8.23667 8.78156 8.96389 9.41016 10.85602 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010395 B = 0.003401 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.904365 B = 8229.920507 C = 9172.790916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.093 3.907 4 C -0.193 4.193 5 C -0.071 4.071 6 C -0.070 4.070 7 C -0.095 4.095 8 C 0.521 3.479 9 O -0.556 6.556 10 N -0.595 5.595 11 C 0.235 3.765 12 C -0.529 4.529 13 H 0.063 0.937 14 C 0.067 3.933 15 N -0.892 5.892 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.201 3.799 21 C -0.016 4.016 22 C -0.180 4.180 23 C -0.216 4.216 24 C -0.057 4.057 25 O -0.170 6.170 26 C -0.093 4.093 27 C 0.072 3.928 28 O -0.487 6.487 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.264 0.736 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.148 0.852 42 H 0.140 0.860 43 H 0.192 0.808 44 H 0.134 0.866 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.490 -10.010 -2.290 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.047 3.953 4 C -0.212 4.212 5 C -0.089 4.089 6 C -0.071 4.071 7 C -0.135 4.135 8 C 0.309 3.691 9 O -0.436 6.436 10 N -0.326 5.326 11 C 0.116 3.884 12 C -0.568 4.568 13 H 0.082 0.918 14 C -0.136 4.136 15 N -0.531 5.531 16 Si 0.718 3.282 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C 0.077 3.923 21 C -0.067 4.067 22 C -0.200 4.200 23 C -0.236 4.236 24 C -0.126 4.126 25 O -0.065 6.065 26 C -0.111 4.111 27 C 0.027 3.973 28 O -0.296 6.296 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.166 0.834 42 H 0.158 0.842 43 H 0.209 0.791 44 H 0.151 0.849 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.543 -10.729 -3.288 12.516 hybrid contribution -1.179 1.431 1.013 2.113 sum -6.722 -9.298 -2.275 11.697 Atomic orbital electron populations 1.23037 0.78903 1.03609 1.01336 1.86107 1.20887 1.26546 1.89017 1.19374 0.91687 0.84657 0.99554 1.21058 0.99775 0.91842 1.08506 1.20872 0.94071 0.97118 0.96878 1.19304 0.93280 0.94080 1.00401 1.20633 1.02941 0.94227 0.95681 1.20384 0.76980 0.80901 0.90836 1.90657 1.51352 1.55195 1.46362 1.48319 1.58571 1.19011 1.06746 1.19539 0.95942 0.89616 0.83349 1.21519 1.00120 1.18482 1.16642 0.91838 1.24887 0.95659 0.97101 0.95945 1.69918 1.23723 1.36932 1.22509 0.86551 0.82527 0.80792 0.78363 1.19632 1.20933 1.20905 1.19626 0.90901 0.97794 0.83996 1.22929 0.90231 0.93374 1.00196 1.21569 0.98777 0.95304 1.04349 1.21773 0.97337 0.99003 1.05458 1.23845 0.96386 0.86164 1.06169 1.84064 1.25640 1.36873 1.59954 1.21089 1.00383 0.90321 0.99330 1.17622 0.86015 0.86336 1.07363 1.84907 1.71922 1.39829 1.32899 0.92696 0.88479 0.92789 0.85321 0.85485 0.88112 0.86693 0.94051 0.94500 0.92637 0.87872 0.89523 0.83378 0.84231 0.79076 0.84862 0.76448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.20 10.28 -34.20 -0.35 -4.55 16 3 C 0.09 1.37 6.70 -39.12 -0.26 1.11 16 4 C -0.19 -2.72 9.04 -39.46 -0.36 -3.07 16 5 C -0.07 -1.11 9.69 -39.57 -0.38 -1.50 16 6 C -0.07 -1.15 4.37 -104.61 -0.46 -1.61 16 7 C -0.10 -1.67 4.38 -29.04 -0.13 -1.80 16 8 C 0.52 10.55 7.66 -10.99 -0.08 10.46 16 9 O -0.56 -12.58 15.61 5.55 0.09 -12.50 16 10 N -0.60 -11.95 2.44 -176.43 -0.43 -12.38 16 11 C 0.24 5.16 5.01 -5.19 -0.03 5.14 16 12 C -0.53 -12.91 9.03 -34.44 -0.31 -13.22 16 13 H 0.06 1.65 7.65 -52.48 -0.40 1.24 16 14 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -23.45 13.29 55.43 0.74 -22.71 16 16 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.20 3.67 5.98 -5.19 -0.03 3.64 16 21 C -0.02 -0.31 6.90 -35.63 -0.25 -0.55 16 22 C -0.18 -3.36 10.40 -39.70 -0.41 -3.78 16 23 C -0.22 -3.64 10.91 -39.70 -0.43 -4.07 16 24 C -0.06 -0.94 12.09 29.42 0.36 -0.58 16 25 O -0.17 -3.33 10.65 5.72 0.06 -3.27 16 26 C -0.09 -1.44 9.63 -39.45 -0.38 -1.82 16 27 C 0.07 1.09 6.72 -39.12 -0.26 0.83 16 28 O -0.49 -6.70 13.29 -34.21 -0.45 -7.16 16 29 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 32 H 0.13 1.46 6.30 -52.48 -0.33 1.13 16 33 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 34 H 0.10 1.61 7.34 -51.93 -0.38 1.23 16 35 H 0.11 2.10 7.94 -51.93 -0.41 1.68 16 36 H 0.04 0.92 6.44 -51.93 -0.33 0.59 16 37 H 0.04 0.84 7.89 -51.93 -0.41 0.43 16 38 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 39 H 0.10 1.64 7.89 -51.93 -0.41 1.23 16 40 H 0.09 1.55 7.42 -51.93 -0.39 1.17 16 41 H 0.15 2.75 8.06 -52.49 -0.42 2.33 16 42 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 43 H 0.19 2.30 8.06 -52.49 -0.42 1.88 16 44 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 45 H 0.38 3.30 9.06 45.56 0.41 3.71 16 LS Contribution 390.23 15.07 5.88 5.88 Total: -1.00 -32.50 390.23 -7.14 -39.64 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.12 Total: 9.98 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.52 Total: -8.00 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.31 Total: -35.10 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.66 Total: -27.47 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.50 -7.14 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601023410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.766 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds