Wall clock time and date at job start Wed Apr 1 2020 03:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35987 * 116.99863 * 2 1 4 4 C 1.38558 * 120.07562 * 0.02675 * 3 2 1 5 5 C 1.38249 * 120.00205 * 179.70691 * 4 3 2 6 6 C 1.38247 * 120.14275 * 0.53951 * 5 4 3 7 7 C 1.50703 * 119.92840 * 179.72508 * 6 5 4 8 8 C 1.50696 * 109.47568 * 269.73350 * 7 6 5 9 9 O 1.21289 * 119.99762 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00038 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00377 * 0.02562 * 10 8 7 12 12 C 1.50704 * 109.47158 * 270.00187 * 11 10 8 13 13 H 1.08004 * 120.00008 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00004 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00307 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00235 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46458 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47024 * 119.99906 * 16 14 12 19 19 H 1.48495 * 109.47092 * 240.00570 * 16 14 12 20 20 C 1.46506 * 119.99868 * 180.02562 * 10 8 7 21 21 C 1.50703 * 109.47289 * 89.99907 * 20 10 8 22 22 C 1.34508 * 125.78448 * 90.00098 * 21 20 10 23 23 C 1.41394 * 106.83701 * 179.97438 * 22 21 20 24 24 C 1.34513 * 106.83758 * 359.97438 * 23 22 21 25 25 O 1.34295 * 125.78633 * 269.69055 * 21 20 10 26 26 C 1.38249 * 120.15108 * 359.46123 * 6 5 4 27 27 C 1.38570 * 119.99382 * 0.26852 * 26 6 5 28 28 O 1.35990 * 120.07193 * 179.97438 * 27 26 6 29 29 H 1.08998 * 109.47621 * 60.00078 * 1 2 3 30 30 H 1.09007 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46994 * 299.99284 * 1 2 3 32 32 H 1.08006 * 119.99942 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.92964 * 180.29526 * 5 4 3 34 34 H 1.09003 * 109.47198 * 149.72660 * 7 6 5 35 35 H 1.09003 * 109.46308 * 29.73592 * 7 6 5 36 36 H 1.08997 * 109.46694 * 29.99578 * 11 10 8 37 37 H 1.08995 * 109.47258 * 149.99854 * 11 10 8 38 38 H 0.96996 * 120.00505 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.47060 * 210.00357 * 20 10 8 40 40 H 1.09004 * 109.47073 * 329.99846 * 20 10 8 41 41 H 1.08001 * 126.58556 * 359.96469 * 22 21 20 42 42 H 1.07997 * 126.57684 * 179.97438 * 23 22 21 43 43 H 1.07998 * 125.78636 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00262 * 180.24578 * 26 6 5 45 45 H 0.96701 * 114.00141 * 89.99279 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2932 2.3747 0.0006 5 6 1.9224 3.6057 0.0067 6 6 3.3028 3.6798 0.0010 7 6 3.9837 5.0243 0.0015 8 6 4.2105 5.4731 -1.4191 9 8 3.8548 4.7701 -2.3413 10 7 4.8086 6.6555 -1.6649 11 6 5.2388 7.5044 -0.5511 12 6 4.1184 8.4369 -0.1684 13 1 3.1800 8.4011 -0.7018 14 6 4.2915 9.3357 0.8627 15 7 5.4340 9.3790 1.5125 16 14 2.9031 10.4921 1.3367 17 1 1.7313 10.2445 0.4587 18 1 2.5205 10.2525 2.7514 19 1 3.3536 11.8980 1.1769 20 6 5.0286 7.0921 -3.0460 21 6 3.8362 7.8832 -3.5188 22 6 3.6785 9.2138 -3.4015 23 6 2.4252 9.5298 -3.9748 24 6 1.8925 8.3733 -4.4086 25 8 2.7537 7.3799 -4.1339 26 6 4.0603 2.5233 0.0004 27 6 3.4359 1.2862 -0.0001 28 8 4.1795 0.1476 -0.0012 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.2146 2.3195 0.0006 33 1 1.3342 4.5115 0.0119 34 1 4.9418 4.9462 0.5153 35 1 3.3537 5.7502 0.5157 36 1 5.4987 6.8790 0.3029 37 1 6.1091 8.0868 -0.8533 38 1 5.5557 10.0111 2.2382 39 1 5.9206 7.7169 -3.0919 40 1 5.1628 6.2198 -3.6858 41 1 4.3752 9.9077 -2.9550 42 1 1.9809 10.5113 -4.0500 43 1 0.9362 8.2628 -4.8982 44 1 5.1386 2.5840 0.0000 45 1 4.3951 -0.1822 0.8819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601023410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:07 Heat of formation + Delta-G solvation = -88.968906 kcal Electronic energy + Delta-G solvation = -30275.484163 eV Core-core repulsion = 26031.965034 eV Total energy + Delta-G solvation = -4243.519128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.36626 -41.50953 -40.62141 -38.78619 -37.71115 -36.79761 -34.60781 -33.80183 -33.18112 -31.61626 -31.02234 -29.15478 -29.06474 -27.67880 -26.20328 -24.81175 -23.63320 -22.66303 -22.53588 -21.47330 -20.13940 -19.35438 -18.70627 -18.54106 -18.19467 -17.88812 -17.56026 -17.19995 -16.78875 -16.51681 -16.29973 -16.05797 -15.80014 -15.48002 -15.16882 -14.91124 -14.79709 -14.50424 -14.14970 -13.99272 -13.64309 -13.53226 -13.36678 -13.26710 -13.22483 -12.95911 -12.86070 -12.69707 -12.67905 -12.42081 -12.15245 -12.08846 -11.91044 -11.67553 -11.54265 -10.83802 -10.70819 -10.52477 -9.83081 -9.65026 -9.26848 -9.01815 -8.15451 -6.25167 0.23588 0.31074 0.84192 1.39183 1.44735 1.53368 1.68729 1.82279 2.27742 2.29383 2.37874 2.47837 2.72753 3.16708 3.21551 3.78253 3.81137 3.84084 3.96153 4.08093 4.22344 4.26126 4.33547 4.38598 4.41336 4.43093 4.46305 4.54932 4.61578 4.71542 4.78502 4.93218 4.95066 5.00310 5.12580 5.13533 5.21497 5.26944 5.30486 5.59935 5.66240 5.69820 5.73058 5.82612 6.12456 6.28550 6.32946 6.56762 6.87040 6.88745 7.31310 7.46746 8.90778 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010395 B = 0.003401 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.904365 B = 8229.920507 C = 9172.790916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.089 3.911 4 C -0.189 4.189 5 C -0.085 4.085 6 C -0.087 4.087 7 C -0.087 4.087 8 C 0.517 3.483 9 O -0.581 6.581 10 N -0.595 5.595 11 C 0.249 3.751 12 C -0.523 4.523 13 H 0.047 0.953 14 C 0.030 3.970 15 N -0.918 5.918 16 Si 0.941 3.059 17 H -0.276 1.276 18 H -0.280 1.280 19 H -0.281 1.281 20 C 0.196 3.804 21 C -0.038 4.038 22 C -0.190 4.190 23 C -0.228 4.228 24 C -0.050 4.050 25 O -0.193 6.193 26 C -0.101 4.101 27 C 0.065 3.935 28 O -0.497 6.497 29 H 0.058 0.942 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.156 0.844 33 H 0.129 0.871 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.039 0.961 37 H 0.029 0.971 38 H 0.265 0.735 39 H 0.122 0.878 40 H 0.086 0.914 41 H 0.143 0.857 42 H 0.165 0.835 43 H 0.234 0.766 44 H 0.140 0.860 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.129 -10.393 -2.302 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.043 3.957 4 C -0.207 4.207 5 C -0.104 4.104 6 C -0.088 4.088 7 C -0.126 4.126 8 C 0.307 3.693 9 O -0.462 6.462 10 N -0.326 5.326 11 C 0.129 3.871 12 C -0.562 4.562 13 H 0.066 0.934 14 C -0.171 4.171 15 N -0.558 5.558 16 Si 0.768 3.232 17 H -0.201 1.201 18 H -0.206 1.206 19 H -0.207 1.207 20 C 0.073 3.927 21 C -0.089 4.089 22 C -0.210 4.210 23 C -0.247 4.247 24 C -0.118 4.118 25 O -0.090 6.090 26 C -0.120 4.120 27 C 0.019 3.981 28 O -0.308 6.308 29 H 0.077 0.923 30 H 0.140 0.860 31 H 0.087 0.913 32 H 0.174 0.826 33 H 0.147 0.853 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.140 0.860 40 H 0.105 0.895 41 H 0.161 0.839 42 H 0.183 0.817 43 H 0.251 0.749 44 H 0.158 0.842 45 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -7.180 -11.116 -3.290 13.636 hybrid contribution -0.732 1.472 0.966 1.906 sum -7.911 -9.644 -2.324 12.689 Atomic orbital electron populations 1.23377 0.76606 1.05658 1.02216 1.86095 1.23277 1.25834 1.88734 1.19508 0.91796 0.85432 0.98994 1.21293 1.01143 0.90946 1.07354 1.21012 0.93908 0.97988 0.97452 1.19283 0.93858 0.93642 1.02021 1.20547 1.03451 0.94769 0.93830 1.20832 0.76267 0.80547 0.91681 1.90631 1.52409 1.55800 1.47398 1.48307 1.58392 1.18796 1.07097 1.19251 0.94860 0.89244 0.83786 1.21542 0.99881 1.18650 1.16114 0.93438 1.25418 0.97229 0.98316 0.96106 1.69983 1.24952 1.37740 1.23084 0.85757 0.80205 0.79278 0.77957 1.20104 1.20576 1.20710 1.19792 0.91679 0.98192 0.83008 1.23002 0.90748 0.93708 1.01446 1.21710 0.99707 0.95130 1.04425 1.22110 0.96690 1.00508 1.05395 1.24709 0.96938 0.85292 1.04815 1.84054 1.26226 1.38272 1.60402 1.21181 1.00814 0.90386 0.99609 1.17739 0.86639 0.86526 1.07172 1.84838 1.71771 1.39282 1.34959 0.92286 0.86005 0.91349 0.82637 0.85341 0.87014 0.87693 0.94301 0.95334 0.92533 0.86030 0.89531 0.83880 0.81729 0.74949 0.84195 0.73953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.16 10.28 -79.54 -0.82 -8.98 16 3 C 0.09 2.51 6.70 22.57 0.15 2.66 16 4 C -0.19 -5.06 9.04 22.35 0.20 -4.86 16 5 C -0.09 -2.64 9.69 22.27 0.22 -2.42 16 6 C -0.09 -2.89 4.37 -19.86 -0.09 -2.98 16 7 C -0.09 -3.08 4.38 29.10 0.13 -2.95 16 8 C 0.52 21.24 7.66 87.66 0.67 21.91 16 9 O -0.58 -26.65 15.61 -3.06 -0.05 -26.69 16 10 N -0.60 -24.21 2.44 -830.48 -2.03 -26.24 16 11 C 0.25 11.04 5.01 85.63 0.43 11.47 16 12 C -0.52 -25.60 9.03 25.60 0.23 -25.37 16 13 H 0.05 2.47 7.65 -2.91 -0.02 2.45 16 14 C 0.03 1.48 5.46 84.65 0.46 1.94 16 15 N -0.92 -48.11 13.29 21.44 0.28 -47.82 16 16 Si 0.94 40.92 29.54 68.60 2.03 42.95 16 17 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 C 0.20 7.26 5.98 85.63 0.51 7.78 16 21 C -0.04 -1.48 6.90 24.83 0.17 -1.30 16 22 C -0.19 -7.03 10.40 22.19 0.23 -6.80 16 23 C -0.23 -7.30 10.91 22.19 0.24 -7.06 16 24 C -0.05 -1.54 12.09 66.97 0.81 -0.73 16 25 O -0.19 -7.47 10.65 -2.46 -0.03 -7.50 16 26 C -0.10 -3.15 9.63 22.35 0.22 -2.93 16 27 C 0.06 1.92 6.72 22.57 0.15 2.07 16 28 O -0.50 -13.17 13.29 -79.57 -1.06 -14.22 16 29 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 30 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 32 H 0.16 3.17 6.30 -2.91 -0.02 3.15 16 33 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 34 H 0.11 3.63 7.34 -2.39 -0.02 3.61 16 35 H 0.10 3.91 7.94 -2.39 -0.02 3.89 16 36 H 0.04 1.75 6.44 -2.39 -0.02 1.74 16 37 H 0.03 1.32 7.89 -2.39 -0.02 1.30 16 38 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 39 H 0.12 3.91 7.89 -2.39 -0.02 3.89 16 40 H 0.09 3.17 7.42 -2.38 -0.02 3.15 16 41 H 0.14 5.34 8.06 -2.91 -0.02 5.32 16 42 H 0.17 4.30 8.06 -2.91 -0.02 4.28 16 43 H 0.23 4.81 8.06 -2.91 -0.02 4.79 16 44 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 45 H 0.40 6.46 9.06 -74.06 -0.67 5.79 16 Total: -1.00 -68.71 390.23 4.54 -64.17 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.36 Total: 32.56 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 5.85 Total: -8.22 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -1.74 Total: -74.06 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -1.95 Total: -57.39 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -68.71 4.54 -64.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601023410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.802 kcal (2) G-P(sol) polarization free energy of solvation -68.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds