Wall clock time and date at job start Wed Apr 1 2020 03:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00178 * 2 1 4 4 O 1.20834 * 119.99898 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00324 * 180.02562 * 3 2 1 6 6 C 1.52997 * 110.77764 * 303.23830 * 5 3 2 7 7 C 1.54323 * 110.72202 * 66.47693 * 5 3 2 8 8 N 1.47017 * 107.27415 * 140.55669 * 7 5 3 9 9 S 1.65604 * 125.65076 * 181.01501 * 8 7 5 10 10 O 1.42095 * 104.27682 * 26.10158 * 9 8 7 11 11 O 1.42100 * 104.27436 * 153.95864 * 9 8 7 12 12 C 1.81396 * 104.44670 * 270.02938 * 9 8 7 13 13 C 1.53006 * 109.46808 * 172.69656 * 12 9 8 14 14 C 1.50693 * 115.55280 * 39.93975 * 13 12 9 15 15 H 1.08001 * 120.00292 * 272.15223 * 14 13 12 16 16 C 1.37880 * 120.00210 * 92.15095 * 14 13 12 17 17 N 1.31509 * 119.99946 * 173.94056 * 16 14 13 18 18 Si 1.86792 * 119.99714 * 353.94051 * 16 14 13 19 19 H 1.48499 * 109.47561 * 93.63108 * 18 16 14 20 20 H 1.48505 * 109.47241 * 213.62980 * 18 16 14 21 21 H 1.48497 * 109.47378 * 333.62809 * 18 16 14 22 22 C 1.53004 * 117.49489 * 254.23084 * 13 12 9 23 23 C 1.53001 * 60.00079 * 252.51013 * 22 13 12 24 24 C 1.47432 * 108.70159 * 1.06023 * 8 7 5 25 25 C 1.54906 * 104.83106 * 335.87286 * 24 8 7 26 26 H 1.09001 * 111.00231 * 278.92985 * 25 24 8 27 27 C 1.52993 * 111.00506 * 155.08351 * 25 24 8 28 28 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47395 * 299.99850 * 1 2 3 30 30 H 1.09006 * 109.47009 * 59.99906 * 1 2 3 31 31 H 1.08995 * 109.47725 * 296.75971 * 6 5 3 32 32 H 1.08997 * 109.46947 * 56.76636 * 6 5 3 33 33 H 1.09001 * 109.46900 * 176.75979 * 6 5 3 34 34 H 1.08994 * 109.88463 * 259.97969 * 7 5 3 35 35 H 1.09004 * 109.88249 * 21.14333 * 7 5 3 36 36 H 1.08999 * 109.47336 * 292.69166 * 12 9 8 37 37 H 1.08996 * 109.47428 * 52.69745 * 12 9 8 38 38 H 0.97003 * 120.00087 * 179.97438 * 17 16 14 39 39 H 1.08998 * 117.49840 * 0.02562 * 22 13 12 40 40 H 1.08999 * 117.49701 * 145.01982 * 22 13 12 41 41 H 1.09003 * 117.49939 * 252.51682 * 23 22 13 42 42 H 1.08995 * 117.49696 * 107.48910 * 23 22 13 43 43 H 1.09004 * 110.36372 * 217.03206 * 24 8 7 44 44 H 1.09001 * 110.45794 * 94.75786 * 24 8 7 45 45 H 1.09000 * 109.47200 * 307.80549 * 27 25 24 46 46 H 1.09005 * 109.47310 * 67.79720 * 27 25 24 47 47 H 1.08996 * 109.47735 * 187.80106 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1498 0.5200 1.1955 7 6 4.1412 0.7284 -1.3244 8 7 5.2656 1.5965 -1.7033 9 16 6.1939 1.4344 -3.0651 10 8 5.3427 0.7760 -3.9930 11 8 6.6774 2.7465 -3.3178 12 6 7.5512 0.3421 -2.5603 13 6 8.3862 -0.0337 -3.7861 14 6 8.6246 1.0775 -4.7756 15 1 7.9124 1.2577 -5.5673 16 6 9.7521 1.8642 -4.6705 17 7 10.0217 2.7544 -5.6002 18 14 10.8963 1.6655 -3.2075 19 1 11.9860 0.7189 -3.5562 20 1 11.4806 2.9841 -2.8534 21 1 10.1322 1.1358 -2.0497 22 6 8.2302 -1.4517 -4.3394 23 6 9.5056 -1.0584 -3.5912 24 6 5.4307 2.6345 -0.6695 25 6 4.0386 2.7528 -0.0004 26 1 3.3710 3.3763 -0.5952 27 6 4.1599 3.2896 1.4271 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.8212 0.9945 2.1201 32 1 3.8058 -0.5140 1.1755 33 1 5.2384 0.5418 1.1429 34 1 4.4932 -0.2932 -1.1819 35 1 3.3755 0.7541 -2.0997 36 1 8.1816 0.8570 -1.8353 37 1 7.1417 -0.5615 -2.1087 38 1 10.8147 3.3082 -5.5260 39 1 7.5325 -2.1166 -3.8303 40 1 8.2999 -1.5809 -5.4194 41 1 10.4143 -0.9289 -4.1791 42 1 9.6472 -1.4647 -2.5898 43 1 5.7140 3.5829 -1.1260 44 1 6.1784 2.3282 0.0621 45 1 4.8842 2.6913 1.9799 46 1 4.4926 4.3272 1.3980 47 1 3.1897 3.2328 1.9204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601483456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:36 Heat of formation + Delta-G solvation = -124.221696 kcal Electronic energy + Delta-G solvation = -30325.666027 eV Core-core repulsion = 26216.062175 eV Total energy + Delta-G solvation = -4109.603853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19292 -38.93736 -37.13618 -36.62362 -36.26944 -35.05549 -33.23890 -32.19606 -31.52338 -28.55283 -27.98686 -26.81086 -26.21775 -25.50857 -23.54638 -21.75053 -21.63110 -19.45466 -19.39087 -18.48913 -17.62790 -17.39706 -16.68911 -16.62451 -16.42467 -15.73570 -15.39686 -14.97877 -14.64216 -14.49189 -14.21428 -13.86207 -13.78129 -13.56501 -13.03060 -12.98908 -12.80452 -12.70909 -12.64305 -12.53870 -12.40095 -12.29279 -12.04363 -11.58972 -11.33049 -11.23559 -11.17653 -11.06793 -11.03685 -10.85654 -10.84769 -10.75875 -10.62424 -10.49314 -10.37358 -10.12169 -9.76461 -9.17429 -8.91417 -8.66768 -8.47386 -6.21082 -4.32631 0.90696 1.94028 2.40190 3.21348 3.29898 3.31464 3.35222 3.92222 4.21653 4.32886 4.42556 4.59707 4.65685 4.70988 4.80304 4.83648 4.91582 4.96769 5.04260 5.09711 5.20875 5.24128 5.29453 5.41785 5.44447 5.47889 5.53045 5.58710 5.65927 5.67067 5.73886 5.87066 5.94590 5.97899 6.02980 6.10776 6.14869 6.16123 6.22272 6.39272 6.51288 6.61319 6.80985 7.04585 7.48238 7.56805 8.31324 8.82170 9.40780 10.90399 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018243 B = 0.003601 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.458272 B = 7772.793815 C = 8182.195918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.478 3.522 4 O -0.499 6.499 5 C -0.063 4.063 6 C -0.140 4.140 7 C 0.138 3.862 8 N -1.025 6.025 9 S 2.639 3.361 10 O -0.958 6.958 11 O -0.927 6.927 12 C -0.582 4.582 13 C 0.009 3.991 14 C -0.537 4.537 15 H 0.087 0.913 16 C 0.101 3.899 17 N -0.872 5.872 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.258 1.258 22 C -0.173 4.173 23 C -0.188 4.188 24 C 0.117 3.883 25 C -0.082 4.082 26 H 0.100 0.900 27 C -0.143 4.143 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.269 0.731 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.315 -5.862 17.579 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.320 3.680 4 O -0.386 6.386 5 C -0.066 4.066 6 C -0.197 4.197 7 C 0.012 3.988 8 N -0.861 5.861 9 S 2.736 3.264 10 O -0.949 6.949 11 O -0.917 6.917 12 C -0.713 4.713 13 C 0.006 3.994 14 C -0.574 4.574 15 H 0.105 0.895 16 C -0.106 4.106 17 N -0.506 5.506 18 Si 0.705 3.295 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.182 1.182 22 C -0.210 4.210 23 C -0.226 4.226 24 C -0.008 4.008 25 C -0.102 4.102 26 H 0.118 0.882 27 C -0.201 4.201 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.140 0.860 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.572 -4.993 16.590 22.008 hybrid contribution 0.805 -0.456 1.208 1.522 sum -12.767 -5.448 17.798 22.571 Atomic orbital electron populations 1.23297 0.76268 1.03811 1.02598 1.86520 1.23431 1.33233 1.83887 1.23372 0.91226 0.81430 0.71950 1.90666 1.66786 1.36340 1.44777 1.21651 0.87035 0.99334 0.98543 1.21914 1.02182 1.00179 0.95422 1.21534 0.89490 0.93961 0.93838 1.59329 1.45049 1.39864 1.41827 1.04439 0.74412 0.76010 0.71562 1.93492 1.65003 1.78071 1.58352 1.93572 1.81110 1.35596 1.81399 1.30335 1.17503 1.14698 1.08760 1.18753 0.97296 0.90703 0.92657 1.20415 1.10197 1.13455 1.13360 0.89488 1.24934 0.96816 0.93630 0.95242 1.69880 1.26396 1.21556 1.32769 0.86886 0.81232 0.77252 0.84121 1.20147 1.21481 1.18234 1.22966 0.99285 0.98657 1.00085 1.22945 0.93895 1.05700 1.00074 1.22132 0.96297 0.92431 0.89942 1.22395 0.96830 0.92654 0.98338 0.88167 1.21783 1.02185 1.01582 0.94516 0.87966 0.91941 0.91735 0.91257 0.90884 0.90298 0.90261 0.90719 0.85972 0.87542 0.92093 0.90557 0.88758 0.88967 0.90661 0.88882 0.91229 0.91764 0.91587 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.63 10.40 -39.25 -0.41 -4.04 16 3 C 0.48 5.61 6.51 36.00 0.23 5.85 16 4 O -0.50 -6.94 15.45 -18.76 -0.29 -7.22 16 5 C -0.06 -0.68 0.70 -153.83 -0.11 -0.79 16 6 C -0.14 -1.10 7.26 37.16 0.27 -0.83 16 7 C 0.14 1.78 6.06 -3.07 -0.02 1.76 16 8 N -1.02 -15.75 3.62 -111.42 -0.40 -16.15 16 9 S 2.64 54.63 4.79 -107.50 -0.52 54.12 16 10 O -0.96 -22.07 17.60 -57.54 -1.01 -23.08 16 11 O -0.93 -22.82 16.49 -57.54 -0.95 -23.77 16 12 C -0.58 -11.22 6.15 37.16 0.23 -10.99 16 13 C 0.01 0.20 1.12 -155.66 -0.17 0.02 16 14 C -0.54 -15.05 7.55 -34.44 -0.26 -15.31 16 15 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 16 C 0.10 2.89 5.46 -17.82 -0.10 2.79 16 17 N -0.87 -26.55 13.96 55.43 0.77 -25.78 16 18 Si 0.88 21.18 24.98 -169.99 -4.25 16.93 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.26 -5.66 5.46 56.52 0.31 -5.35 16 22 C -0.17 -3.49 9.88 -26.73 -0.26 -3.75 16 23 C -0.19 -3.85 7.54 -26.73 -0.20 -4.06 16 24 C 0.12 1.50 6.23 -2.53 -0.02 1.48 16 25 C -0.08 -0.92 2.60 -88.48 -0.23 -1.15 16 26 H 0.10 1.27 7.40 -51.93 -0.38 0.89 16 27 C -0.14 -1.22 8.22 37.15 0.31 -0.91 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.07 0.47 6.76 -51.93 -0.35 0.12 16 32 H 0.07 0.52 8.06 -51.93 -0.42 0.10 16 33 H 0.08 0.58 7.58 -51.93 -0.39 0.18 16 34 H 0.08 0.85 7.84 -51.93 -0.41 0.44 16 35 H 0.07 1.04 7.81 -51.93 -0.41 0.63 16 36 H 0.12 2.23 6.56 -51.92 -0.34 1.89 16 37 H 0.11 1.62 7.95 -51.93 -0.41 1.21 16 38 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 40 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 41 H 0.09 1.98 7.01 -51.93 -0.36 1.62 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.09 1.27 7.67 -51.93 -0.40 0.88 16 44 H 0.07 0.72 7.65 -51.93 -0.40 0.32 16 45 H 0.06 0.45 6.70 -51.93 -0.35 0.10 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -35.93 383.24 -8.19 -44.11 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.65 Total: 3.67 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 0.74 Total: -24.57 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.37 Total: -41.93 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -2.66 Total: -58.11 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.25 Total: 16.93 kcal Atomic # 16 Polarization: 54.63 SS G_CDS: -0.52 Total: 54.12 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.93 -8.19 -44.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601483456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.107 kcal (2) G-P(sol) polarization free energy of solvation -35.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds