Wall clock time and date at job start Wed Apr 1 2020 03:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00178 * 2 1 4 4 O 1.20834 * 119.99898 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00324 * 180.02562 * 3 2 1 6 6 C 1.52997 * 110.77764 * 303.23830 * 5 3 2 7 7 C 1.54323 * 110.72202 * 66.47693 * 5 3 2 8 8 N 1.47017 * 107.27415 * 140.55669 * 7 5 3 9 9 S 1.65604 * 125.65076 * 181.01501 * 8 7 5 10 10 O 1.42095 * 104.27682 * 26.10158 * 9 8 7 11 11 O 1.42100 * 104.27436 * 153.95864 * 9 8 7 12 12 C 1.81396 * 104.44670 * 270.02938 * 9 8 7 13 13 C 1.53006 * 109.46808 * 172.69656 * 12 9 8 14 14 C 1.50693 * 115.55280 * 39.93975 * 13 12 9 15 15 H 1.08001 * 120.00292 * 272.15223 * 14 13 12 16 16 C 1.37880 * 120.00210 * 92.15095 * 14 13 12 17 17 N 1.31509 * 119.99946 * 173.94056 * 16 14 13 18 18 Si 1.86792 * 119.99714 * 353.94051 * 16 14 13 19 19 H 1.48499 * 109.47561 * 93.63108 * 18 16 14 20 20 H 1.48505 * 109.47241 * 213.62980 * 18 16 14 21 21 H 1.48497 * 109.47378 * 333.62809 * 18 16 14 22 22 C 1.53004 * 117.49489 * 254.23084 * 13 12 9 23 23 C 1.53001 * 60.00079 * 252.51013 * 22 13 12 24 24 C 1.47432 * 108.70159 * 1.06023 * 8 7 5 25 25 C 1.54906 * 104.83106 * 335.87286 * 24 8 7 26 26 H 1.09001 * 111.00231 * 278.92985 * 25 24 8 27 27 C 1.52993 * 111.00506 * 155.08351 * 25 24 8 28 28 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47395 * 299.99850 * 1 2 3 30 30 H 1.09006 * 109.47009 * 59.99906 * 1 2 3 31 31 H 1.08995 * 109.47725 * 296.75971 * 6 5 3 32 32 H 1.08997 * 109.46947 * 56.76636 * 6 5 3 33 33 H 1.09001 * 109.46900 * 176.75979 * 6 5 3 34 34 H 1.08994 * 109.88463 * 259.97969 * 7 5 3 35 35 H 1.09004 * 109.88249 * 21.14333 * 7 5 3 36 36 H 1.08999 * 109.47336 * 292.69166 * 12 9 8 37 37 H 1.08996 * 109.47428 * 52.69745 * 12 9 8 38 38 H 0.97003 * 120.00087 * 179.97438 * 17 16 14 39 39 H 1.08998 * 117.49840 * 0.02562 * 22 13 12 40 40 H 1.08999 * 117.49701 * 145.01982 * 22 13 12 41 41 H 1.09003 * 117.49939 * 252.51682 * 23 22 13 42 42 H 1.08995 * 117.49696 * 107.48910 * 23 22 13 43 43 H 1.09004 * 110.36372 * 217.03206 * 24 8 7 44 44 H 1.09001 * 110.45794 * 94.75786 * 24 8 7 45 45 H 1.09000 * 109.47200 * 307.80549 * 27 25 24 46 46 H 1.09005 * 109.47310 * 67.79720 * 27 25 24 47 47 H 1.08996 * 109.47735 * 187.80106 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1498 0.5200 1.1955 7 6 4.1412 0.7284 -1.3244 8 7 5.2656 1.5965 -1.7033 9 16 6.1939 1.4344 -3.0651 10 8 5.3427 0.7760 -3.9930 11 8 6.6774 2.7465 -3.3178 12 6 7.5512 0.3421 -2.5603 13 6 8.3862 -0.0337 -3.7861 14 6 8.6246 1.0775 -4.7756 15 1 7.9124 1.2577 -5.5673 16 6 9.7521 1.8642 -4.6705 17 7 10.0217 2.7544 -5.6002 18 14 10.8963 1.6655 -3.2075 19 1 11.9860 0.7189 -3.5562 20 1 11.4806 2.9841 -2.8534 21 1 10.1322 1.1358 -2.0497 22 6 8.2302 -1.4517 -4.3394 23 6 9.5056 -1.0584 -3.5912 24 6 5.4307 2.6345 -0.6695 25 6 4.0386 2.7528 -0.0004 26 1 3.3710 3.3763 -0.5952 27 6 4.1599 3.2896 1.4271 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.8212 0.9945 2.1201 32 1 3.8058 -0.5140 1.1755 33 1 5.2384 0.5418 1.1429 34 1 4.4932 -0.2932 -1.1819 35 1 3.3755 0.7541 -2.0997 36 1 8.1816 0.8570 -1.8353 37 1 7.1417 -0.5615 -2.1087 38 1 10.8147 3.3082 -5.5260 39 1 7.5325 -2.1166 -3.8303 40 1 8.2999 -1.5809 -5.4194 41 1 10.4143 -0.9289 -4.1791 42 1 9.6472 -1.4647 -2.5898 43 1 5.7140 3.5829 -1.1260 44 1 6.1784 2.3282 0.0621 45 1 4.8842 2.6913 1.9799 46 1 4.4926 4.3272 1.3980 47 1 3.1897 3.2328 1.9204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601483456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:35 Heat of formation + Delta-G solvation = -151.153189 kcal Electronic energy + Delta-G solvation = -30326.833864 eV Core-core repulsion = 26216.062175 eV Total energy + Delta-G solvation = -4110.771690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.06931 -39.84621 -38.82663 -37.99731 -37.51272 -36.78202 -34.34533 -34.20255 -32.33832 -30.11899 -28.62544 -27.76918 -27.52078 -26.97193 -24.50433 -23.33165 -22.52536 -21.23108 -20.25046 -19.95870 -18.95995 -18.42559 -18.28353 -17.61784 -17.48108 -17.14887 -16.98659 -16.50891 -15.96518 -15.57143 -15.42313 -14.96675 -14.87175 -14.74854 -14.52282 -14.40798 -14.18818 -13.83474 -13.75314 -13.39603 -13.31318 -13.16354 -12.97483 -12.95842 -12.92336 -12.68274 -12.65117 -12.61074 -12.26681 -12.04782 -12.02368 -11.86628 -11.81865 -11.71061 -11.66864 -11.58597 -11.37329 -10.92929 -10.72065 -10.34653 -9.91954 -8.35978 -6.52753 -0.64981 1.04562 1.33489 1.37065 1.49107 1.61412 1.98222 2.34417 2.92140 3.00983 3.03638 3.15916 3.28862 3.46300 3.70150 3.83492 3.90779 3.99514 4.15319 4.24183 4.30056 4.32863 4.36656 4.43941 4.44601 4.47533 4.60303 4.62026 4.67748 4.71692 4.79701 4.87049 4.87870 4.90835 4.97113 5.02260 5.11422 5.18528 5.20952 5.24806 5.31054 5.38334 5.48548 5.49420 5.62156 6.13895 6.61510 6.62788 7.24574 8.80906 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018243 B = 0.003601 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.458272 B = 7772.793815 C = 8182.195918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.477 3.523 4 O -0.530 6.530 5 C -0.056 4.056 6 C -0.138 4.138 7 C 0.128 3.872 8 N -1.021 6.021 9 S 2.633 3.367 10 O -0.999 6.999 11 O -0.985 6.985 12 C -0.565 4.565 13 C -0.032 4.032 14 C -0.539 4.539 15 H 0.024 0.976 16 C 0.035 3.965 17 N -0.936 5.936 18 Si 0.934 3.066 19 H -0.258 1.258 20 H -0.295 1.295 21 H -0.210 1.210 22 C -0.167 4.167 23 C -0.169 4.169 24 C 0.109 3.891 25 C -0.082 4.082 26 H 0.071 0.929 27 C -0.137 4.137 28 H 0.134 0.866 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.051 0.949 36 H 0.142 0.858 37 H 0.162 0.838 38 H 0.270 0.730 39 H 0.118 0.882 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.071 0.929 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.068 0.932 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 -9.238 22.591 27.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.321 3.679 4 O -0.418 6.418 5 C -0.059 4.059 6 C -0.195 4.195 7 C 0.003 3.997 8 N -0.859 5.859 9 S 2.734 3.266 10 O -0.990 6.990 11 O -0.976 6.976 12 C -0.698 4.698 13 C -0.035 4.035 14 C -0.577 4.577 15 H 0.042 0.958 16 C -0.166 4.166 17 N -0.573 5.573 18 Si 0.756 3.244 19 H -0.183 1.183 20 H -0.222 1.222 21 H -0.132 1.132 22 C -0.204 4.204 23 C -0.208 4.208 24 C -0.016 4.016 25 C -0.102 4.102 26 H 0.089 0.911 27 C -0.194 4.194 28 H 0.152 0.848 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.070 0.930 36 H 0.160 0.840 37 H 0.180 0.820 38 H 0.079 0.921 39 H 0.136 0.864 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.140 0.860 43 H 0.090 0.910 44 H 0.126 0.874 45 H 0.108 0.892 46 H 0.087 0.913 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.977 -8.394 21.591 26.552 hybrid contribution 0.421 0.570 -0.484 0.858 sum -12.556 -7.824 21.107 25.775 Atomic orbital electron populations 1.23582 0.74807 1.05874 1.02436 1.86506 1.24894 1.32281 1.83356 1.23636 0.91749 0.81426 0.71136 1.90658 1.67526 1.37380 1.46278 1.21678 0.86387 0.99059 0.98769 1.22001 1.02970 1.00429 0.94101 1.21806 0.88319 0.95212 0.94370 1.58753 1.45014 1.41096 1.41065 1.04090 0.74980 0.75271 0.72243 1.93429 1.66264 1.78333 1.60943 1.93501 1.82192 1.38766 1.83105 1.30107 1.15841 1.16512 1.07349 1.18709 1.00960 0.90167 0.93659 1.20534 1.08642 1.15404 1.13079 0.95781 1.26024 0.98994 0.93034 0.98562 1.70061 1.27690 1.23687 1.35829 0.85990 0.79462 0.77559 0.81432 1.18320 1.22238 1.13230 1.23086 1.00388 0.97131 0.99779 1.23057 0.92613 1.02963 1.02126 1.22443 0.98267 0.91075 0.89790 1.22350 0.95247 0.93058 0.99524 0.91080 1.21774 1.02940 1.02125 0.92608 0.84809 0.91417 0.92683 0.89860 0.89650 0.88721 0.87068 0.93034 0.83987 0.81978 0.92146 0.86365 0.90713 0.90537 0.86011 0.91027 0.87363 0.89150 0.91348 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.35 -6.55 10.40 -51.37 -0.53 -7.09 16 3 C 0.48 10.59 6.51 71.23 0.46 11.06 16 4 O -0.53 -14.69 15.45 21.94 0.34 -14.35 16 5 C -0.06 -1.08 0.70 -51.74 -0.04 -1.11 16 6 C -0.14 -1.50 7.26 71.98 0.52 -0.98 16 7 C 0.13 3.06 6.06 86.73 0.53 3.58 16 8 N -1.02 -30.02 3.62 -506.42 -1.83 -31.85 16 9 S 2.63 109.35 4.79 -56.49 -0.27 109.08 16 10 O -1.00 -47.53 17.60 -127.65 -2.25 -49.78 16 11 O -0.99 -51.05 16.49 -127.65 -2.11 -53.15 16 12 C -0.56 -19.44 6.15 71.98 0.44 -19.00 16 13 C -0.03 -1.41 1.12 -52.93 -0.06 -1.47 16 14 C -0.54 -31.27 7.55 25.60 0.19 -31.07 16 15 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 16 C 0.03 2.03 5.46 84.66 0.46 2.49 16 17 N -0.94 -60.37 13.96 21.45 0.30 -60.07 16 18 Si 0.93 42.23 24.98 68.60 1.71 43.95 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 21 H -0.21 -7.82 5.46 99.48 0.54 -7.27 16 22 C -0.17 -6.21 9.88 30.60 0.30 -5.91 16 23 C -0.17 -6.14 7.54 30.60 0.23 -5.91 16 24 C 0.11 2.59 6.23 86.85 0.54 3.13 16 25 C -0.08 -1.72 2.60 -9.41 -0.02 -1.74 16 26 H 0.07 1.88 7.40 -2.39 -0.02 1.87 16 27 C -0.14 -1.97 8.22 71.98 0.59 -1.37 16 28 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.05 0.83 8.13 -2.38 -0.02 0.81 16 31 H 0.08 0.71 6.76 -2.39 -0.02 0.70 16 32 H 0.08 0.76 8.06 -2.39 -0.02 0.74 16 33 H 0.09 0.78 7.58 -2.39 -0.02 0.76 16 34 H 0.11 1.92 7.84 -2.39 -0.02 1.90 16 35 H 0.05 1.44 7.81 -2.39 -0.02 1.42 16 36 H 0.14 4.35 6.56 -2.39 -0.02 4.34 16 37 H 0.16 3.77 7.95 -2.39 -0.02 3.75 16 38 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 39 H 0.12 3.41 8.08 -2.39 -0.02 3.39 16 40 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.08 3.03 7.01 -2.39 -0.02 3.01 16 42 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 43 H 0.07 2.00 7.67 -2.38 -0.02 1.99 16 44 H 0.11 1.76 7.65 -2.39 -0.02 1.74 16 45 H 0.09 0.84 6.70 -2.39 -0.02 0.82 16 46 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -87.88 383.24 1.51 -86.38 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.80 Total: 23.64 kcal Atomic # 6 Polarization: -52.11 SS G_CDS: 5.35 Total: -46.76 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -1.53 Total: -91.92 kcal Atomic # 8 Polarization: -119.82 SS G_CDS: -4.55 Total: -124.37 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.71 Total: 43.95 kcal Atomic # 16 Polarization: 109.35 SS G_CDS: -0.27 Total: 109.08 kcal Total: -87.88 1.51 -86.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601483456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.778 kcal (2) G-P(sol) polarization free energy of solvation -87.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds