Wall clock time and date at job start Wed Apr 1 2020 03:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99651 * 2 1 4 4 O 1.20822 * 120.00171 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99640 * 180.02562 * 3 2 1 6 6 N 1.46500 * 112.91070 * 323.41595 * 5 3 2 7 7 C 1.46503 * 119.99944 * 292.86264 * 6 5 3 8 8 C 1.53002 * 117.49765 * 358.99861 * 7 6 5 9 9 C 1.52999 * 117.50098 * 290.33960 * 7 6 5 10 10 S 1.65599 * 120.00332 * 112.86218 * 6 5 3 11 11 O 1.42093 * 104.27814 * 195.13335 * 10 6 5 12 12 O 1.42098 * 104.27465 * 322.99314 * 10 6 5 13 13 C 1.81397 * 104.44833 * 79.05867 * 10 6 5 14 14 C 1.52999 * 109.47069 * 169.84616 * 13 10 6 15 15 C 1.53006 * 109.47159 * 180.02562 * 14 13 10 16 16 C 1.50701 * 109.46946 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00272 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00025 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99749 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00176 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47179 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47219 * 120.00415 * 20 18 16 23 23 H 1.48504 * 109.46947 * 240.00414 * 20 18 16 24 24 C 1.53781 * 113.61701 * 94.66708 * 5 3 2 25 25 C 1.53781 * 87.08201 * 139.97664 * 24 5 3 26 26 C 1.53779 * 87.08409 * 334.57030 * 25 24 5 27 27 H 1.09000 * 109.46939 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47050 * 299.99839 * 1 2 3 29 29 H 1.08995 * 109.47381 * 59.99922 * 1 2 3 30 30 H 1.09005 * 115.55047 * 144.66374 * 7 6 5 31 31 H 1.08997 * 117.49938 * 359.97438 * 8 7 6 32 32 H 1.09005 * 117.49800 * 145.01782 * 8 7 6 33 33 H 1.08996 * 117.49960 * 214.98150 * 9 7 6 34 34 H 1.08997 * 117.49417 * 359.97265 * 9 7 6 35 35 H 1.08994 * 109.47877 * 289.85050 * 13 10 6 36 36 H 1.09001 * 109.47144 * 49.85156 * 13 10 6 37 37 H 1.09001 * 109.47369 * 300.00273 * 14 13 10 38 38 H 1.09003 * 109.47249 * 60.00780 * 14 13 10 39 39 H 1.09002 * 109.46995 * 299.99643 * 15 14 13 40 40 H 1.08996 * 109.46960 * 60.00335 * 15 14 13 41 41 H 0.97003 * 120.00223 * 179.97438 * 19 18 16 42 42 H 1.09006 * 113.61079 * 25.43249 * 24 5 3 43 43 H 1.08994 * 113.61558 * 254.52964 * 24 5 3 44 44 H 1.09007 * 113.61262 * 89.11989 * 25 24 5 45 45 H 1.08995 * 113.61793 * 220.01795 * 25 24 5 46 46 H 1.09000 * 113.61726 * 139.97364 * 26 25 24 47 47 H 1.09003 * 113.61384 * 270.88117 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1928 0.2225 0.8032 7 6 4.0247 0.2143 2.2585 8 6 3.2030 1.3449 2.8812 9 6 4.7234 1.3168 3.0567 10 16 5.0911 -0.9578 0.0669 11 8 5.2264 -1.9657 1.0593 12 8 4.4025 -1.2148 -1.1492 13 6 6.6914 -0.1696 -0.2623 14 6 7.6986 -1.2292 -0.7134 15 6 9.0486 -0.5645 -0.9904 16 6 10.0405 -1.6081 -1.4354 17 1 9.7384 -2.6421 -1.5124 18 6 11.3337 -1.2429 -1.7441 19 7 11.7017 0.0162 -1.6497 20 14 12.5634 -2.5366 -2.2949 21 1 11.9050 -3.8674 -2.3179 22 1 13.0550 -2.2045 -3.6563 23 1 13.7078 -2.5663 -1.3489 24 6 4.1749 1.4219 -1.4051 25 6 5.1708 2.4155 -0.7839 26 6 4.1095 2.6827 0.2964 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.9534 -0.7716 2.7180 31 1 2.7879 2.0950 2.2081 32 1 2.5915 1.1028 3.7505 33 1 5.1116 1.0564 4.0413 34 1 5.3085 2.0480 2.4990 35 1 6.5739 0.5775 -1.0471 36 1 7.0530 0.3118 0.6464 37 1 7.8162 -1.9763 0.0715 38 1 7.3371 -1.7106 -1.6221 39 1 8.9314 0.1828 -1.7753 40 1 9.4100 -0.0834 -0.0816 41 1 12.6116 0.2731 -1.8665 42 1 3.4984 1.8768 -2.1287 43 1 4.6422 0.5098 -1.7762 44 1 6.0757 1.9443 -0.3999 45 1 5.3776 3.2792 -1.4158 46 1 4.5239 2.7882 1.2991 47 1 3.4150 3.4821 0.0380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603361478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:36 Heat of formation + Delta-G solvation = -109.154701 kcal Electronic energy + Delta-G solvation = -30569.909826 eV Core-core repulsion = 26460.959327 eV Total energy + Delta-G solvation = -4108.950499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.41557 -40.29974 -38.69776 -37.75962 -37.23453 -37.13975 -36.44610 -34.19835 -33.22382 -29.87069 -29.26790 -27.30772 -26.88825 -25.57083 -23.45937 -23.19099 -22.74946 -22.03526 -21.28028 -19.84777 -19.08135 -18.69510 -18.52232 -18.09954 -17.55811 -17.26838 -17.17992 -16.50018 -16.33122 -16.07021 -15.76535 -15.48451 -15.08757 -14.50712 -14.48941 -14.25582 -13.99917 -13.62938 -13.58597 -13.48321 -13.30996 -13.28025 -13.08671 -13.03911 -12.92913 -12.75799 -12.68230 -12.60510 -12.45101 -12.30309 -12.13053 -11.84209 -11.78721 -11.66561 -11.45644 -11.35682 -11.27236 -11.24136 -11.06366 -10.54939 -9.95719 -8.20328 -6.30308 -0.95328 0.89313 1.39111 1.40894 1.42482 1.54851 1.67143 2.41523 2.60262 2.72995 2.97604 2.99167 3.13692 3.22853 3.53838 3.59387 3.67662 3.68584 3.86581 3.94152 4.04129 4.07282 4.19732 4.22352 4.27647 4.39046 4.55362 4.59791 4.62517 4.63523 4.68827 4.78199 4.81842 4.88970 4.97316 5.04203 5.07017 5.16075 5.21897 5.24636 5.28666 5.44324 5.48965 5.66994 5.82557 6.22860 6.58976 6.85190 7.38775 8.91036 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018995 B = 0.003069 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.721721 B = 9121.840150 C = 9217.114510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.361 6.361 3 C 0.477 3.523 4 O -0.519 6.519 5 C 0.152 3.848 6 N -0.941 5.941 7 C 0.051 3.949 8 C -0.174 4.174 9 C -0.180 4.180 10 S 2.614 3.386 11 O -0.976 6.976 12 O -0.971 6.971 13 C -0.617 4.617 14 C -0.103 4.103 15 C 0.034 3.966 16 C -0.551 4.551 17 H 0.058 0.942 18 C 0.005 3.995 19 N -0.927 5.927 20 Si 0.959 3.041 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.277 1.277 24 C -0.175 4.175 25 C -0.158 4.158 26 C -0.123 4.123 27 H 0.123 0.877 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.140 0.860 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.007 0.993 40 H 0.007 0.993 41 H 0.264 0.736 42 H 0.122 0.878 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.611 6.673 7.742 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.277 6.277 3 C 0.318 3.682 4 O -0.407 6.407 5 C 0.062 3.938 6 N -0.776 5.776 7 C -0.054 4.054 8 C -0.213 4.213 9 C -0.219 4.219 10 S 2.713 3.287 11 O -0.967 6.967 12 O -0.961 6.961 13 C -0.748 4.748 14 C -0.142 4.142 15 C -0.004 4.004 16 C -0.589 4.589 17 H 0.077 0.923 18 C -0.193 4.193 19 N -0.567 5.567 20 Si 0.783 3.217 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.213 4.213 25 C -0.195 4.195 26 C -0.161 4.161 27 H 0.141 0.859 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.157 0.843 31 H 0.114 0.886 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.173 0.827 36 H 0.174 0.826 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.141 0.859 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.063 6.130 7.529 23.193 hybrid contribution 0.755 -0.105 -0.436 0.878 sum -20.309 6.025 7.093 22.339 Atomic orbital electron populations 1.23593 0.74936 1.05540 1.02894 1.86619 1.24970 1.33202 1.82881 1.23957 0.91773 0.81373 0.71060 1.90629 1.66759 1.36627 1.46734 1.21360 0.84558 0.92208 0.95677 1.56768 1.64137 1.42945 1.13716 1.21784 1.08690 0.97501 0.77460 1.23437 0.95328 0.99313 1.03178 1.23790 0.94676 1.00735 1.02692 1.04954 0.76710 0.73778 0.73237 1.93502 1.87399 1.55808 1.59977 1.93516 1.71670 1.83711 1.47179 1.30954 1.18170 1.12203 1.13436 1.21318 0.95855 0.96156 1.00901 1.18942 0.90344 0.95193 0.95943 1.21758 0.96514 0.95246 1.45360 0.92346 1.25863 1.00435 0.97455 0.95556 1.70060 1.19140 1.17693 1.49807 0.85493 0.78711 0.79444 0.78004 1.18910 1.20328 1.20298 1.24066 1.00483 1.03336 0.93423 1.23371 0.97209 1.00629 0.98246 1.23604 0.98073 0.92024 1.02419 0.85908 0.91140 0.91596 0.84299 0.88607 0.86230 0.85885 0.86744 0.82730 0.82638 0.91448 0.91783 0.97474 0.97455 0.92674 0.85939 0.88343 0.88081 0.87314 0.87273 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.56 113.37 1.20 1.60 16 2 O -0.36 -9.25 10.43 -51.44 -0.54 -9.78 16 3 C 0.48 11.89 5.60 71.24 0.40 12.29 16 4 O -0.52 -13.58 15.52 21.98 0.34 -13.24 16 5 C 0.15 3.42 0.60 3.39 0.00 3.42 16 6 N -0.94 -22.47 2.84 -451.03 -1.28 -23.75 16 7 C 0.05 1.04 6.03 44.99 0.27 1.31 16 8 C -0.17 -2.72 9.04 30.62 0.28 -2.45 16 9 C -0.18 -2.64 9.76 30.62 0.30 -2.34 16 10 S 2.61 78.77 4.78 -56.49 -0.27 78.50 16 11 O -0.98 -34.40 16.68 -127.65 -2.13 -36.53 16 12 O -0.97 -33.52 14.93 -127.65 -1.91 -35.42 16 13 C -0.62 -18.00 4.32 71.98 0.31 -17.69 16 14 C -0.10 -4.04 5.16 30.60 0.16 -3.88 16 15 C 0.03 1.69 4.97 29.85 0.15 1.83 16 16 C -0.55 -30.55 9.11 25.60 0.23 -30.32 16 17 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 18 C 0.01 0.30 5.46 84.65 0.46 0.76 16 19 N -0.93 -54.16 13.29 21.45 0.28 -53.88 16 20 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 24 C -0.18 -3.85 6.27 31.12 0.20 -3.66 16 25 C -0.16 -2.76 7.26 31.12 0.23 -2.54 16 26 C -0.12 -2.08 5.82 31.12 0.18 -1.90 16 27 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 29 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 30 H 0.14 2.95 7.45 -2.38 -0.02 2.94 16 31 H 0.10 1.66 4.93 -2.39 -0.01 1.65 16 32 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.11 1.51 5.97 -2.39 -0.01 1.49 16 35 H 0.15 3.99 4.76 -2.39 -0.01 3.98 16 36 H 0.16 3.81 8.07 -2.39 -0.02 3.79 16 37 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 41 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.12 2.38 8.09 -2.38 -0.02 2.36 16 43 H 0.10 2.53 3.90 -2.42 -0.01 2.52 16 44 H 0.10 1.82 4.71 -2.38 -0.01 1.81 16 45 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.11 1.54 4.15 -2.39 -0.01 1.53 16 47 H 0.11 1.85 7.35 -2.39 -0.02 1.83 16 Total: -1.00 -73.50 376.09 1.88 -71.62 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.99 Total: 20.55 kcal Atomic # 6 Polarization: -47.90 SS G_CDS: 4.36 Total: -43.54 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -1.00 Total: -77.63 kcal Atomic # 8 Polarization: -90.75 SS G_CDS: -4.23 Total: -94.98 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 78.77 SS G_CDS: -0.27 Total: 78.50 kcal Total: -73.50 1.88 -71.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603361478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.536 kcal (2) G-P(sol) polarization free energy of solvation -73.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds