Wall clock time and date at job start Wed Apr 1 2020 03:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34237 * 116.99743 * 2 1 4 4 O 1.20823 * 119.99897 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99798 * 179.97438 * 3 2 1 6 6 H 1.09003 * 115.56496 * 325.71012 * 5 3 2 7 7 C 1.53034 * 117.50156 * 111.41620 * 5 3 2 8 8 C 1.52818 * 117.50323 * 179.97438 * 5 3 2 9 9 C 1.53179 * 117.71464 * 144.89575 * 8 5 3 10 10 C 1.53357 * 108.76297 * 158.87506 * 9 8 5 11 11 N 1.46843 * 108.80736 * 51.32309 * 10 9 8 12 12 S 1.65604 * 120.38194 * 123.11637 * 11 10 9 13 13 O 1.42096 * 104.27937 * 206.06715 * 12 11 10 14 14 O 1.42102 * 104.27484 * 333.92962 * 12 11 10 15 15 C 1.81398 * 104.44880 * 89.99703 * 12 11 10 16 16 C 1.53007 * 109.47329 * 180.02562 * 15 12 11 17 17 C 1.53003 * 109.47065 * 180.02562 * 16 15 12 18 18 C 1.50700 * 109.46503 * 179.97438 * 17 16 15 19 19 H 1.07992 * 120.00489 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99566 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00181 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00268 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47154 * 89.99553 * 22 20 18 24 24 H 1.48493 * 109.47430 * 210.00163 * 22 20 18 25 25 H 1.48505 * 109.46543 * 330.00117 * 22 20 18 26 26 C 1.46843 * 119.23915 * 303.09369 * 11 10 9 27 27 C 1.53185 * 117.70932 * 0.14050 * 8 5 3 28 28 H 1.09004 * 109.47120 * 60.00078 * 1 2 3 29 29 H 1.08997 * 109.47112 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47208 * 300.00140 * 1 2 3 31 31 H 1.09002 * 117.50811 * 0.02562 * 7 5 3 32 32 H 1.09005 * 117.52940 * 214.94051 * 7 5 3 33 33 H 1.09001 * 109.58758 * 39.09804 * 9 8 5 34 34 H 1.08998 * 109.59238 * 278.66593 * 9 8 5 35 35 H 1.09005 * 109.57799 * 171.11889 * 10 9 8 36 36 H 1.08993 * 109.58302 * 291.38806 * 10 9 8 37 37 H 1.09001 * 109.47208 * 300.00179 * 15 12 11 38 38 H 1.09007 * 109.47270 * 60.00219 * 15 12 11 39 39 H 1.08992 * 109.46863 * 300.00020 * 16 15 12 40 40 H 1.08996 * 109.46488 * 60.00186 * 16 15 12 41 41 H 1.09001 * 109.47330 * 300.00026 * 17 16 15 42 42 H 1.09006 * 109.46923 * 60.00031 * 17 16 15 43 43 H 0.96998 * 120.00100 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.57891 * 176.69876 * 26 11 10 45 45 H 1.08998 * 109.57589 * 297.10211 * 26 11 10 46 46 H 1.09006 * 109.58832 * 81.33609 * 27 8 5 47 47 H 1.08994 * 109.70978 * 320.97301 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0783 0.4884 0.5549 7 6 4.2465 1.8067 -1.2629 8 6 4.2001 2.6655 -0.0001 9 6 5.5047 2.8542 0.7802 10 6 6.2273 4.0944 0.2404 11 7 5.2863 5.2216 0.2255 12 16 5.6396 6.6185 1.0419 13 8 4.3694 7.1830 1.3366 14 8 6.5166 6.2049 2.0808 15 6 6.5242 7.6390 -0.1691 16 6 6.9101 8.9732 0.4730 17 6 7.6556 9.8342 -0.5486 18 6 8.0350 11.1484 0.0837 19 1 7.7713 11.3493 1.1115 20 6 8.7190 12.0944 -0.6500 21 7 9.0398 11.8501 -1.9018 22 14 9.1900 13.7232 0.1340 23 1 10.5304 13.6013 0.7613 24 1 9.2250 14.7818 -0.9069 25 1 8.1889 14.0813 1.1708 26 6 4.0286 5.0962 -0.5219 27 6 3.2615 3.8761 0.0021 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.6056 2.0998 -2.0944 32 1 5.2063 1.3704 -1.5400 33 1 6.1382 1.9767 0.6504 34 1 5.2812 2.9928 1.8380 35 1 7.0735 4.3334 0.8847 36 1 6.5824 3.8989 -0.7713 37 1 7.4251 7.1185 -0.4939 38 1 5.8803 7.8223 -1.0294 39 1 6.0094 9.4938 0.7981 40 1 7.5541 8.7895 1.3330 41 1 8.5563 9.3137 -0.8742 42 1 7.0111 10.0177 -1.4084 43 1 9.5206 12.5157 -2.4180 44 1 3.4279 5.9944 -0.3794 45 1 4.2454 4.9637 -1.5819 46 1 2.9171 4.0698 1.0180 47 1 2.4051 3.6784 -0.6425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609615862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:04 Heat of formation + Delta-G solvation = -138.668509 kcal Electronic energy + Delta-G solvation = -28500.430441 eV Core-core repulsion = 24390.200128 eV Total energy + Delta-G solvation = -4110.230314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.25104 -39.33318 -36.95273 -36.88574 -35.85318 -35.59202 -34.64747 -32.17384 -31.41777 -29.90261 -28.29305 -27.76513 -24.71282 -23.82533 -23.75872 -23.30347 -20.89575 -20.59284 -19.74198 -18.37428 -18.05740 -17.56909 -16.86226 -16.62967 -16.55448 -16.11387 -15.72976 -15.16177 -14.91565 -14.63843 -14.47583 -14.38336 -14.07950 -13.89299 -13.53042 -13.50051 -12.86350 -12.62457 -12.48130 -12.44508 -12.31094 -12.23914 -11.92731 -11.77893 -11.75477 -11.61691 -11.43523 -11.20312 -11.17962 -10.97155 -10.91689 -10.83847 -10.54508 -10.44381 -10.33592 -10.24965 -9.94280 -9.47013 -9.20445 -8.85488 -8.40313 -6.05256 -4.08264 0.46048 1.70322 2.23978 2.76123 3.25914 3.30854 3.36909 3.41178 4.03977 4.09867 4.18928 4.27983 4.34423 4.42657 4.48576 4.60329 4.69250 4.77679 4.85295 4.92171 5.01948 5.10407 5.17731 5.21384 5.22380 5.27080 5.31229 5.34317 5.45823 5.49365 5.52803 5.65574 5.78100 5.88049 5.90865 6.02272 6.07953 6.23541 6.28090 6.46480 6.55969 6.88248 7.39785 7.57543 7.67557 7.92835 8.33443 8.97989 9.56395 11.05916 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.030594 B = 0.001997 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.997676 B =14015.646006 C =14089.217797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.491 3.509 4 O -0.497 6.497 5 C -0.168 4.168 6 H 0.135 0.865 7 C -0.138 4.138 8 C -0.077 4.077 9 C -0.097 4.097 10 C 0.122 3.878 11 N -1.003 6.003 12 S 2.596 3.404 13 O -0.959 6.959 14 O -0.961 6.961 15 C -0.609 4.609 16 C -0.106 4.106 17 C 0.031 3.969 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.118 3.882 27 C -0.100 4.100 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 44 H 0.096 0.904 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.477 -27.499 0.043 30.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.334 3.666 4 O -0.384 6.384 5 C -0.187 4.187 6 H 0.153 0.847 7 C -0.175 4.175 8 C -0.078 4.078 9 C -0.135 4.135 10 C -0.003 4.003 11 N -0.840 5.840 12 S 2.693 3.307 13 O -0.949 6.949 14 O -0.951 6.951 15 C -0.740 4.740 16 C -0.146 4.146 17 C -0.008 4.008 18 C -0.564 4.564 19 H 0.076 0.924 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.007 4.007 27 C -0.139 4.139 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.878 -26.972 0.794 29.899 hybrid contribution 0.314 0.806 -0.351 0.933 sum -12.564 -26.166 0.443 29.029 Atomic orbital electron populations 1.23285 0.76099 1.03736 1.02714 1.86495 1.23519 1.33458 1.84032 1.22733 0.90536 0.81241 0.72074 1.90648 1.66984 1.35663 1.45152 1.21896 0.88177 1.01623 1.07029 0.84682 1.23193 1.01992 1.01497 0.90803 1.21605 0.97307 0.89663 0.99200 1.21558 0.93529 0.98422 1.00035 1.21365 0.91559 0.85481 1.01936 1.57802 1.27496 1.29510 1.69181 1.05496 0.75089 0.73940 0.76147 1.93558 1.40018 1.78176 1.83178 1.93548 1.68311 1.80432 1.52832 1.30603 1.13957 1.12586 1.16890 1.21501 1.01508 0.91013 1.00528 1.19064 0.94988 0.93464 0.93252 1.21260 1.36328 1.00419 0.98435 0.92367 1.25023 0.95801 0.98715 0.94863 1.69958 1.40105 1.35209 1.08156 0.86551 0.78960 0.83246 0.79028 1.20572 1.21175 1.19748 1.21512 0.83904 0.99878 0.95383 1.21838 0.96737 0.91445 1.03865 0.91803 0.88071 0.91756 0.87878 0.86940 0.90229 0.90332 0.88391 0.91053 0.85514 0.85494 0.91637 0.91639 0.96136 0.96123 0.92913 0.88551 0.91323 0.90738 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.98 10.57 -39.28 -0.41 -3.40 16 3 C 0.49 4.56 7.72 36.00 0.28 4.84 16 4 O -0.50 -5.75 12.80 -18.75 -0.24 -5.99 16 5 C -0.17 -1.22 6.03 -91.85 -0.55 -1.78 16 6 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 7 C -0.14 -0.84 9.64 -26.82 -0.26 -1.10 16 8 C -0.08 -0.63 1.94 -154.52 -0.30 -0.93 16 9 C -0.10 -0.76 5.83 -26.45 -0.15 -0.92 16 10 C 0.12 1.11 6.41 -3.67 -0.02 1.08 16 11 N -1.00 -11.44 3.17 -113.46 -0.36 -11.80 16 12 S 2.60 39.01 5.43 -107.50 -0.58 38.42 16 13 O -0.96 -17.16 16.58 -57.54 -0.95 -18.12 16 14 O -0.96 -16.70 16.58 -57.54 -0.95 -17.65 16 15 C -0.61 -9.46 6.18 37.16 0.23 -9.23 16 16 C -0.11 -2.18 5.16 -26.73 -0.14 -2.31 16 17 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 18 C -0.53 -14.91 9.11 -34.44 -0.31 -15.23 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 22 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.12 1.23 6.40 -3.67 -0.02 1.21 16 27 C -0.10 -1.04 4.46 -26.45 -0.12 -1.15 16 28 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 29 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.93 6.87 -51.93 -0.36 0.57 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.13 1.75 8.14 -51.92 -0.42 1.32 16 38 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.10 1.08 6.87 -51.93 -0.36 0.73 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.10 1.08 5.70 -51.93 -0.30 0.78 16 LS Contribution 393.00 15.07 5.92 5.92 Total: -1.00 -36.20 393.00 -10.15 -46.35 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -7.74 Total: -2.44 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -0.54 Total: -22.06 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.38 Total: -37.69 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -2.56 Total: -45.16 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 39.01 SS G_CDS: -0.58 Total: 38.42 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.20 -10.15 -46.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609615862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.315 kcal (2) G-P(sol) polarization free energy of solvation -36.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds