Wall clock time and date at job start Wed Apr 1 2020 03:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34237 * 116.99743 * 2 1 4 4 O 1.20823 * 119.99897 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99798 * 179.97438 * 3 2 1 6 6 H 1.09003 * 115.56496 * 325.71012 * 5 3 2 7 7 C 1.53034 * 117.50156 * 111.41620 * 5 3 2 8 8 C 1.52818 * 117.50323 * 179.97438 * 5 3 2 9 9 C 1.53179 * 117.71464 * 144.89575 * 8 5 3 10 10 C 1.53357 * 108.76297 * 158.87506 * 9 8 5 11 11 N 1.46843 * 108.80736 * 51.32309 * 10 9 8 12 12 S 1.65604 * 120.38194 * 123.11637 * 11 10 9 13 13 O 1.42096 * 104.27937 * 206.06715 * 12 11 10 14 14 O 1.42102 * 104.27484 * 333.92962 * 12 11 10 15 15 C 1.81398 * 104.44880 * 89.99703 * 12 11 10 16 16 C 1.53007 * 109.47329 * 180.02562 * 15 12 11 17 17 C 1.53003 * 109.47065 * 180.02562 * 16 15 12 18 18 C 1.50700 * 109.46503 * 179.97438 * 17 16 15 19 19 H 1.07992 * 120.00489 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99566 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00181 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00268 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47154 * 89.99553 * 22 20 18 24 24 H 1.48493 * 109.47430 * 210.00163 * 22 20 18 25 25 H 1.48505 * 109.46543 * 330.00117 * 22 20 18 26 26 C 1.46843 * 119.23915 * 303.09369 * 11 10 9 27 27 C 1.53185 * 117.70932 * 0.14050 * 8 5 3 28 28 H 1.09004 * 109.47120 * 60.00078 * 1 2 3 29 29 H 1.08997 * 109.47112 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47208 * 300.00140 * 1 2 3 31 31 H 1.09002 * 117.50811 * 0.02562 * 7 5 3 32 32 H 1.09005 * 117.52940 * 214.94051 * 7 5 3 33 33 H 1.09001 * 109.58758 * 39.09804 * 9 8 5 34 34 H 1.08998 * 109.59238 * 278.66593 * 9 8 5 35 35 H 1.09005 * 109.57799 * 171.11889 * 10 9 8 36 36 H 1.08993 * 109.58302 * 291.38806 * 10 9 8 37 37 H 1.09001 * 109.47208 * 300.00179 * 15 12 11 38 38 H 1.09007 * 109.47270 * 60.00219 * 15 12 11 39 39 H 1.08992 * 109.46863 * 300.00020 * 16 15 12 40 40 H 1.08996 * 109.46488 * 60.00186 * 16 15 12 41 41 H 1.09001 * 109.47330 * 300.00026 * 17 16 15 42 42 H 1.09006 * 109.46923 * 60.00031 * 17 16 15 43 43 H 0.96998 * 120.00100 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.57891 * 176.69876 * 26 11 10 45 45 H 1.08998 * 109.57589 * 297.10211 * 26 11 10 46 46 H 1.09006 * 109.58832 * 81.33609 * 27 8 5 47 47 H 1.08994 * 109.70978 * 320.97301 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0783 0.4884 0.5549 7 6 4.2465 1.8067 -1.2629 8 6 4.2001 2.6655 -0.0001 9 6 5.5047 2.8542 0.7802 10 6 6.2273 4.0944 0.2404 11 7 5.2863 5.2216 0.2255 12 16 5.6396 6.6185 1.0419 13 8 4.3694 7.1830 1.3366 14 8 6.5166 6.2049 2.0808 15 6 6.5242 7.6390 -0.1691 16 6 6.9101 8.9732 0.4730 17 6 7.6556 9.8342 -0.5486 18 6 8.0350 11.1484 0.0837 19 1 7.7713 11.3493 1.1115 20 6 8.7190 12.0944 -0.6500 21 7 9.0398 11.8501 -1.9018 22 14 9.1900 13.7232 0.1340 23 1 10.5304 13.6013 0.7613 24 1 9.2250 14.7818 -0.9069 25 1 8.1889 14.0813 1.1708 26 6 4.0286 5.0962 -0.5219 27 6 3.2615 3.8761 0.0021 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.6056 2.0998 -2.0944 32 1 5.2063 1.3704 -1.5400 33 1 6.1382 1.9767 0.6504 34 1 5.2812 2.9928 1.8380 35 1 7.0735 4.3334 0.8847 36 1 6.5824 3.8989 -0.7713 37 1 7.4251 7.1185 -0.4939 38 1 5.8803 7.8223 -1.0294 39 1 6.0094 9.4938 0.7981 40 1 7.5541 8.7895 1.3330 41 1 8.5563 9.3137 -0.8742 42 1 7.0111 10.0177 -1.4084 43 1 9.5206 12.5157 -2.4180 44 1 3.4279 5.9944 -0.3794 45 1 4.2454 4.9637 -1.5819 46 1 2.9171 4.0698 1.0180 47 1 2.4051 3.6784 -0.6425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609615862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:03 Heat of formation + Delta-G solvation = -162.438614 kcal Electronic energy + Delta-G solvation = -28501.461191 eV Core-core repulsion = 24390.200128 eV Total energy + Delta-G solvation = -4111.261063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.90756 -39.99547 -38.26267 -37.60796 -37.05324 -36.50442 -36.41243 -34.16471 -32.15518 -30.64329 -29.63374 -28.81272 -25.62289 -25.26159 -24.54092 -24.14071 -22.35254 -21.50017 -20.62739 -19.43386 -18.70771 -18.58467 -18.51962 -17.52219 -17.33167 -17.21534 -17.11521 -16.48739 -16.13336 -15.71360 -15.42037 -15.37461 -15.05727 -14.60810 -14.49224 -14.24053 -14.19063 -14.05954 -13.52985 -13.50939 -13.32941 -13.24281 -13.17841 -12.99728 -12.94444 -12.77837 -12.75683 -12.63439 -12.43042 -12.16802 -12.09251 -11.79694 -11.76186 -11.68820 -11.38570 -11.19560 -11.12983 -11.02177 -10.88536 -10.57957 -9.80133 -8.23174 -6.34240 -0.76445 1.03925 1.39775 1.40569 1.51978 1.68667 1.69912 2.39442 2.69322 2.83550 3.10098 3.15091 3.46993 3.60961 3.69291 3.76485 3.84026 3.90388 4.04239 4.17719 4.22681 4.29397 4.31058 4.38883 4.40523 4.53894 4.63299 4.64524 4.69156 4.78815 4.84322 4.88932 4.89967 4.95674 4.99895 5.05065 5.10345 5.26246 5.28390 5.34803 5.44440 5.50618 5.61958 5.72678 5.78668 6.19161 6.73839 6.81037 7.34970 8.88185 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.030594 B = 0.001997 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.997676 B =14015.646006 C =14089.217797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.363 6.363 3 C 0.485 3.515 4 O -0.529 6.529 5 C -0.170 4.170 6 H 0.157 0.843 7 C -0.114 4.114 8 C -0.094 4.094 9 C -0.093 4.093 10 C 0.110 3.890 11 N -0.995 5.995 12 S 2.618 3.382 13 O -0.992 6.992 14 O -0.985 6.985 15 C -0.606 4.606 16 C -0.107 4.107 17 C 0.032 3.968 18 C -0.554 4.554 19 H 0.059 0.941 20 C 0.003 3.997 21 N -0.928 5.928 22 Si 0.963 3.037 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.266 1.266 26 C 0.115 3.885 27 C -0.096 4.096 28 H 0.062 0.938 29 H 0.131 0.869 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.142 0.858 33 H 0.114 0.886 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.005 0.995 42 H 0.002 0.998 43 H 0.265 0.735 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.043 0.957 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.785 -29.346 -0.604 31.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.331 3.669 4 O -0.419 6.419 5 C -0.189 4.189 6 H 0.175 0.825 7 C -0.150 4.150 8 C -0.095 4.095 9 C -0.131 4.131 10 C -0.014 4.014 11 N -0.834 5.834 12 S 2.715 3.285 13 O -0.982 6.982 14 O -0.975 6.975 15 C -0.737 4.737 16 C -0.146 4.146 17 C -0.007 4.007 18 C -0.592 4.592 19 H 0.077 0.923 20 C -0.195 4.195 21 N -0.568 5.568 22 Si 0.788 3.212 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.191 1.191 26 C -0.010 4.010 27 C -0.135 4.135 28 H 0.081 0.919 29 H 0.149 0.851 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.160 0.840 33 H 0.132 0.868 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.023 0.977 42 H 0.021 0.979 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.116 0.884 46 H 0.062 0.938 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.184 -28.830 0.156 31.299 hybrid contribution 0.016 1.280 -0.178 1.293 sum -12.168 -27.550 -0.021 30.117 Atomic orbital electron populations 1.23517 0.74940 1.05600 1.02372 1.86491 1.24769 1.32971 1.83652 1.23232 0.91499 0.81026 0.71174 1.90640 1.67863 1.36659 1.46737 1.22037 0.86940 1.01451 1.08439 0.82544 1.23336 1.02893 0.99172 0.89646 1.21509 0.97136 0.89180 1.01638 1.21562 0.93763 0.99121 0.98691 1.21729 0.90961 0.84793 1.03901 1.57504 1.28238 1.28668 1.68992 1.04580 0.73905 0.74235 0.75775 1.93513 1.41436 1.79414 1.83872 1.93509 1.68889 1.80953 1.54195 1.30547 1.15463 1.10294 1.17403 1.21318 1.00822 0.92934 0.99539 1.18959 0.94478 0.93450 0.93768 1.21739 1.36665 1.01987 0.98796 0.92283 1.25933 0.95647 1.02565 0.95393 1.70066 1.40709 1.36587 1.09461 0.85474 0.78920 0.78571 0.78277 1.19613 1.20462 1.19061 1.21670 0.83213 0.99377 0.96758 1.21711 0.97221 0.92739 1.01859 0.91936 0.85131 0.92375 0.87961 0.83965 0.86764 0.92339 0.88908 0.87831 0.83446 0.83916 0.91945 0.91586 0.97673 0.97915 0.92605 0.90057 0.88382 0.93818 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.60 10.57 -51.49 -0.54 -6.14 16 3 C 0.49 8.60 7.72 71.24 0.55 9.15 16 4 O -0.53 -12.40 12.80 21.97 0.28 -12.12 16 5 C -0.17 -2.07 6.03 -11.59 -0.07 -2.14 16 6 H 0.16 1.22 8.14 -2.39 -0.02 1.20 16 7 C -0.11 -0.97 9.64 30.54 0.29 -0.68 16 8 C -0.09 -1.34 1.94 -52.19 -0.10 -1.44 16 9 C -0.09 -1.22 5.83 30.77 0.18 -1.05 16 10 C 0.11 1.72 6.41 86.43 0.55 2.28 16 11 N -0.99 -21.49 3.17 -512.88 -1.62 -23.11 16 12 S 2.62 78.29 5.43 -56.49 -0.31 77.98 16 13 O -0.99 -36.30 16.58 -127.65 -2.12 -38.42 16 14 O -0.99 -34.15 16.58 -127.65 -2.12 -36.27 16 15 C -0.61 -18.47 6.18 71.98 0.44 -18.03 16 16 C -0.11 -4.43 5.16 30.60 0.16 -4.28 16 17 C 0.03 1.65 4.97 29.85 0.15 1.80 16 18 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 19 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 20 C 0.00 0.17 5.46 84.65 0.46 0.63 16 21 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 22 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 26 C 0.11 2.28 6.40 86.43 0.55 2.83 16 27 C -0.10 -1.97 4.46 30.77 0.14 -1.83 16 28 H 0.06 0.68 8.13 -2.38 -0.02 0.66 16 29 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.14 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.11 0.74 8.10 -2.39 -0.02 0.72 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.58 6.87 -2.38 -0.02 1.56 16 36 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 38 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 39 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.00 0.13 8.14 -2.38 -0.02 0.12 16 43 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.08 1.86 6.87 -2.39 -0.02 1.84 16 45 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 47 H 0.10 2.08 5.70 -2.39 -0.01 2.07 16 Total: -1.00 -80.12 393.00 1.57 -78.55 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.95 Total: 11.35 kcal Atomic # 6 Polarization: -47.59 SS G_CDS: 4.74 Total: -42.85 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -1.34 Total: -78.56 kcal Atomic # 8 Polarization: -88.45 SS G_CDS: -4.50 Total: -92.95 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 78.29 SS G_CDS: -0.31 Total: 77.98 kcal Total: -80.12 1.57 -78.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609615862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.892 kcal (2) G-P(sol) polarization free energy of solvation -80.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds