Wall clock time and date at job start Wed Apr 1 2020 03:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47638 * 2 1 4 4 C 1.35999 * 117.00345 * 179.97438 * 3 2 1 5 5 C 1.38666 * 120.11937 * 359.72969 * 4 3 2 6 6 C 1.38517 * 120.57992 * 179.77836 * 5 4 3 7 7 C 1.37961 * 120.39218 * 0.46296 * 6 5 4 8 8 C 1.39509 * 119.60853 * 359.79455 * 7 6 5 9 9 C 1.38769 * 120.12217 * 180.02562 * 4 3 2 10 10 O 1.35656 * 121.31334 * 359.97438 * 9 4 3 11 11 C 1.42813 * 117.28031 * 146.11376 * 10 9 4 12 12 C 1.50657 * 110.46705 * 48.27892 * 11 10 9 13 13 C 1.46238 * 120.14268 * 148.50864 * 12 11 10 14 14 O 1.21720 * 120.00132 * 186.08512 * 13 12 11 15 15 N 1.34782 * 120.00277 * 6.08061 * 13 12 11 16 16 C 1.47065 * 136.05936 * 184.94211 * 15 13 12 17 17 C 1.53240 * 88.08335 * 207.20690 * 16 15 13 18 18 O 1.42902 * 114.01627 * 87.71706 * 17 16 15 19 19 C 1.50701 * 114.32450 * 220.47141 * 17 16 15 20 20 H 1.07999 * 119.99727 * 93.76586 * 19 17 16 21 21 C 1.37876 * 120.00067 * 273.75566 * 19 17 16 22 22 N 1.31516 * 119.99837 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00104 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47214 * 60.00282 * 23 21 19 25 25 H 1.48496 * 109.47452 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47157 * 300.00360 * 23 21 19 27 27 C 1.47072 * 136.05392 * 5.31971 * 15 13 12 28 28 C 1.35576 * 119.71252 * 328.53465 * 12 11 10 29 29 H 1.09003 * 109.47104 * 59.99301 * 1 2 3 30 30 H 1.08993 * 109.47407 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46870 * 300.00347 * 1 2 3 32 32 H 1.09001 * 109.47569 * 120.00445 * 2 1 3 33 33 H 1.09005 * 109.46999 * 240.00414 * 2 1 3 34 34 H 1.08009 * 119.70950 * 359.97438 * 5 4 3 35 35 H 1.08001 * 119.80822 * 180.22798 * 6 5 4 36 36 H 1.07997 * 120.19640 * 179.82165 * 7 6 5 37 37 H 1.08998 * 109.29841 * 287.97697 * 11 10 9 38 38 H 1.09000 * 109.14158 * 168.48595 * 11 10 9 39 39 H 1.08999 * 113.47033 * 321.94253 * 16 15 13 40 40 H 1.09005 * 113.46470 * 92.38361 * 16 15 13 41 41 H 0.96706 * 113.99902 * 86.38797 * 18 17 16 42 42 H 0.97003 * 119.99737 * 179.97438 * 22 21 19 43 43 H 1.08995 * 113.46452 * 267.62228 * 27 15 13 44 44 H 1.09002 * 113.46485 * 38.06168 * 27 15 13 45 45 H 1.07993 * 121.05910 * 180.88478 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.2017 0.4275 0.0067 6 6 5.5763 0.5978 0.0027 7 6 6.1226 1.8647 0.0021 8 6 5.2818 2.9779 0.0012 9 6 3.8879 2.8066 0.0011 10 8 3.0888 3.9028 0.0006 11 6 3.5541 5.0523 0.7088 12 6 4.9815 5.3584 0.3365 13 6 5.4596 6.7404 0.3342 14 8 6.5779 6.9968 -0.0725 15 7 4.6621 7.7302 0.7822 16 6 4.7348 9.1972 0.8561 17 6 3.7983 9.1312 2.0673 18 8 4.4732 8.9633 3.3157 19 6 2.7442 10.2078 2.0964 20 1 1.7656 10.0166 1.6815 21 6 3.0291 11.4368 2.6527 22 7 4.2210 11.6696 3.1576 23 14 1.7223 12.7710 2.6894 24 1 0.5472 12.2919 3.4606 25 1 2.2756 13.9884 3.3349 26 1 1.3051 13.0936 1.3011 27 6 3.3391 7.8181 1.4185 28 6 5.8206 4.3470 0.0031 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.7858 -0.5694 0.0115 35 1 6.2244 -0.2661 0.0039 36 1 7.1948 1.9939 0.0019 37 1 3.4938 4.8639 1.7807 38 1 2.9250 5.9061 0.4571 39 1 5.7296 9.5710 1.0983 40 1 4.2943 9.6976 -0.0063 41 1 4.7611 9.7924 3.7218 42 1 4.4215 12.5344 3.5486 43 1 2.5232 7.9473 0.7074 44 1 3.1497 7.0214 2.1380 45 1 6.8516 4.5402 -0.2536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619443937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:52 Heat of formation + Delta-G solvation = -68.431262 kcal Electronic energy + Delta-G solvation = -29893.475284 eV Core-core repulsion = 25650.846735 eV Total energy + Delta-G solvation = -4242.628549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08690 -39.83906 -38.95786 -37.47019 -37.10476 -34.11199 -33.80144 -32.21476 -32.04357 -30.98845 -29.49014 -28.66554 -26.36830 -25.69078 -24.93757 -24.42695 -23.09073 -22.41174 -20.79069 -19.34947 -18.47932 -18.24049 -17.50502 -17.45216 -16.72330 -16.53282 -16.07491 -15.55018 -15.32410 -15.08747 -14.87972 -14.61583 -14.49128 -14.26313 -13.91724 -13.48126 -13.42876 -13.15888 -12.90050 -12.75294 -12.60337 -12.37614 -12.23979 -12.13772 -12.01389 -11.75352 -11.56255 -11.24307 -11.12130 -11.07019 -11.02082 -10.80152 -10.50777 -10.29560 -10.10205 -9.80519 -9.21922 -8.80150 -8.47655 -8.31833 -8.06218 -7.83268 -6.41801 -4.53082 0.35811 1.18098 1.83685 2.89535 3.13234 3.15495 3.21814 3.23083 3.45114 3.55075 3.69002 4.16237 4.45082 4.51394 4.56535 4.60216 4.70529 4.76960 4.80161 4.85478 4.93928 5.02834 5.06721 5.24060 5.33321 5.40327 5.43017 5.48245 5.53787 5.74186 5.81690 5.85519 5.92670 6.01067 6.14970 6.16217 6.25162 6.34723 6.37875 6.49825 6.68791 6.77860 6.89485 7.06171 7.40280 7.60796 7.75766 8.38287 8.50090 8.64720 9.18280 9.45263 10.64986 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.002571 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.073623 B =10888.682007 C =12296.716678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.303 6.303 4 C 0.107 3.893 5 C -0.174 4.174 6 C -0.111 4.111 7 C -0.100 4.100 8 C -0.100 4.100 9 C 0.106 3.894 10 O -0.296 6.296 11 C 0.101 3.899 12 C -0.195 4.195 13 C 0.579 3.421 14 O -0.557 6.557 15 N -0.629 5.629 16 C 0.079 3.921 17 C 0.243 3.757 18 O -0.572 6.572 19 C -0.537 4.537 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.910 3.090 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.090 3.910 28 C -0.027 4.027 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.275 0.725 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 -21.994 -4.974 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.217 6.217 4 C 0.061 3.939 5 C -0.193 4.193 6 C -0.129 4.129 7 C -0.119 4.119 8 C -0.101 4.101 9 C 0.060 3.940 10 O -0.210 6.210 11 C 0.026 3.974 12 C -0.198 4.198 13 C 0.370 3.630 14 O -0.438 6.438 15 N -0.361 5.361 16 C -0.043 4.043 17 C 0.201 3.799 18 O -0.386 6.386 19 C -0.575 4.575 20 H 0.091 0.909 21 C -0.131 4.131 22 N -0.536 5.536 23 Si 0.737 3.263 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.032 4.032 28 C -0.047 4.047 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.094 0.906 38 H 0.144 0.856 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.253 0.747 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.772 -22.291 -5.354 23.092 hybrid contribution -0.142 1.153 0.122 1.168 sum -2.914 -21.139 -5.232 21.971 Atomic orbital electron populations 1.21766 0.92598 1.02714 1.03850 1.22804 0.96122 0.82120 1.01166 1.86209 1.17863 1.28829 1.88823 1.18249 0.83273 0.91190 1.01194 1.21180 0.94106 0.97394 1.06627 1.20827 0.94081 0.97241 1.00770 1.21013 0.99689 0.90974 1.00195 1.18975 0.91387 0.94253 1.05494 1.18352 0.88566 0.85502 1.01556 1.86099 1.44019 1.19720 1.71152 1.22106 0.92279 0.86708 0.96257 1.22589 0.96701 0.94416 1.06106 1.17149 0.84465 0.83579 0.77803 1.90769 1.19445 1.83898 1.49714 1.49638 1.19637 1.08695 1.58134 1.24173 1.02233 0.76718 1.01159 1.19457 0.88890 0.89890 0.81660 1.86013 1.77884 1.38959 1.35706 1.21362 0.99037 0.96653 1.40408 0.90853 1.25094 0.95773 0.98643 0.93556 1.69260 1.20335 1.24935 1.39088 0.86345 0.81153 0.80126 0.78655 1.19784 1.20980 1.19839 1.23608 0.84782 0.99963 0.94880 1.22221 0.99499 0.89075 0.93910 0.91393 0.90438 0.91335 0.92093 0.92140 0.84797 0.85168 0.84787 0.90584 0.85649 0.91523 0.89996 0.74749 0.91421 0.89049 0.91119 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.05 0.42 5.46 37.16 0.20 0.62 16 3 O -0.30 -3.77 9.97 -33.02 -0.33 -4.10 16 4 C 0.11 1.36 6.69 -39.23 -0.26 1.10 16 5 C -0.17 -1.70 9.04 -39.32 -0.36 -2.06 16 6 C -0.11 -1.02 10.02 -39.58 -0.40 -1.41 16 7 C -0.10 -1.08 9.85 -39.21 -0.39 -1.47 16 8 C -0.10 -1.39 5.80 -104.98 -0.61 -1.99 16 9 C 0.11 1.57 6.48 -38.56 -0.25 1.32 16 10 O -0.30 -4.79 10.22 -31.95 -0.33 -5.12 16 11 C 0.10 1.58 5.45 35.98 0.20 1.78 16 12 C -0.19 -3.40 5.96 -102.38 -0.61 -4.01 16 13 C 0.58 12.19 7.96 -13.04 -0.10 12.09 16 14 O -0.56 -13.25 17.09 5.17 0.09 -13.16 16 15 N -0.63 -13.34 3.66 -187.08 -0.68 -14.03 16 16 C 0.08 1.82 8.02 -8.63 -0.07 1.75 16 17 C 0.24 5.73 1.57 -91.39 -0.14 5.58 16 18 O -0.57 -14.61 13.53 -35.23 -0.48 -15.09 16 19 C -0.54 -13.13 8.69 -34.44 -0.30 -13.43 16 20 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 21 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 22 N -0.90 -22.85 11.01 55.43 0.61 -22.24 16 23 Si 0.91 19.24 29.54 -169.99 -5.02 14.22 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 27 C 0.09 1.77 5.38 -8.50 -0.05 1.73 16 28 C -0.03 -0.42 9.61 -36.92 -0.35 -0.78 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 33 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 34 H 0.13 0.92 6.28 -52.48 -0.33 0.59 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.08 1.14 7.91 -51.93 -0.41 0.72 16 38 H 0.13 1.90 5.45 -51.93 -0.28 1.62 16 39 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.08 1.79 8.10 -51.93 -0.42 1.37 16 41 H 0.40 10.35 6.33 45.56 0.29 10.64 16 42 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 43 H 0.09 1.59 7.90 -51.93 -0.41 1.18 16 44 H 0.07 1.29 6.86 -51.93 -0.36 0.94 16 45 H 0.15 2.22 7.62 -52.49 -0.40 1.82 16 LS Contribution 374.59 15.07 5.64 5.64 Total: -1.00 -30.48 374.59 -8.90 -39.37 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -5.20 Total: 12.59 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -3.20 Total: 1.90 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.07 Total: -36.26 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -1.04 Total: -37.46 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.48 -8.90 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619443937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.058 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds